Wall clock time and date at job start Tue Mar 31 2020 05:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47033 * 314.47737 * 3 2 1 5 5 C 1.36936 * 119.99849 * 95.94991 * 4 3 2 6 6 H 1.08000 * 119.99799 * 162.49886 * 5 4 3 7 7 C 1.38809 * 120.00296 * 342.77843 * 5 4 3 8 8 N 1.31622 * 119.99768 * 338.15884 * 7 5 4 9 9 Si 1.86801 * 120.00193 * 158.15903 * 7 5 4 10 10 H 1.48500 * 109.46920 * 59.99943 * 9 7 5 11 11 H 1.48499 * 109.47092 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47080 * 299.99806 * 9 7 5 13 13 C 1.46499 * 120.00118 * 275.94664 * 4 3 2 14 14 C 1.50706 * 109.47104 * 270.00401 * 13 4 3 15 15 C 1.38264 * 119.97882 * 269.72313 * 14 13 4 16 16 C 1.38206 * 120.03555 * 179.77009 * 15 14 13 17 17 C 1.38344 * 120.00115 * 0.50632 * 16 15 14 18 18 Cl 1.73596 * 120.02271 * 179.72875 * 17 16 15 19 19 C 1.38445 * 119.95999 * 359.74677 * 17 16 15 20 20 Cl 1.73605 * 120.02110 * 180.02562 * 19 17 16 21 21 C 1.38203 * 119.97825 * 89.99941 * 14 13 4 22 22 H 4.40642 * 5.51353 * 179.97438 * 4 1 2 23 23 H 1.08998 * 109.46425 * 194.47848 * 3 2 1 24 24 H 1.08998 * 109.46822 * 74.47644 * 3 2 1 25 25 H 0.96996 * 119.99888 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46702 * 30.00385 * 13 4 3 27 27 H 1.08998 * 109.47212 * 150.00336 * 13 4 3 28 28 H 1.07999 * 119.97944 * 359.97438 * 15 14 13 29 29 H 1.07998 * 120.00144 * 180.25384 * 16 15 14 30 30 H 1.07997 * 120.00614 * 359.95613 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.9668 0.9855 5 6 3.4794 -2.2318 0.5904 6 1 4.0931 -2.8489 1.2300 7 6 3.0450 -2.7190 -0.6346 8 7 1.9906 -2.1886 -1.2172 9 14 3.9567 -4.1272 -1.4563 10 1 3.9332 -5.3172 -0.5683 11 1 3.2974 -4.4587 -2.7450 12 1 5.3639 -3.7255 -1.7087 13 6 3.2548 -0.5810 2.3937 14 6 4.6282 -0.0129 2.6435 15 6 5.6612 -0.8470 3.0293 16 6 6.9222 -0.3281 3.2541 17 6 7.1490 1.0283 3.1034 18 17 8.7311 1.6818 3.3925 19 6 6.1134 1.8643 2.7222 20 17 6.3964 3.5665 2.5320 21 6 4.8529 1.3424 2.4925 22 1 -1.0499 0.0000 0.0003 23 1 3.0088 0.9959 0.2569 24 1 3.0094 -0.2742 -0.9902 25 1 1.6872 -2.5288 -2.0734 26 1 2.5020 0.1712 2.6297 27 1 3.1036 -1.4568 3.0246 28 1 5.4833 -1.9052 3.1518 29 1 7.7296 -0.9807 3.5514 30 1 4.0447 1.9939 2.1948 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281448137.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:02 Heat of formation + Delta-G solvation = 78.352286 kcal Electronic energy + Delta-G solvation = -17105.539242 eV Core-core repulsion = 14147.470026 eV Total energy + Delta-G solvation = -2958.069216 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.023 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49641 -38.08308 -37.48009 -37.21424 -33.77526 -33.41801 -31.86401 -31.41831 -28.08061 -27.37664 -23.94990 -23.84314 -22.06813 -19.30677 -18.47376 -17.87605 -17.02052 -16.82868 -16.56213 -15.59764 -15.35541 -15.11186 -14.84232 -14.78617 -14.25746 -13.41532 -13.33722 -12.96827 -12.85553 -12.83208 -12.65173 -12.32883 -12.20769 -12.16320 -11.97504 -11.88099 -11.81064 -10.78920 -10.72354 -10.30562 -9.86507 -9.54848 -8.94021 -7.81071 -5.23072 0.04341 0.20631 0.87031 1.23914 1.49523 1.53737 1.58043 2.29189 2.54078 2.58144 2.65005 3.31835 3.70618 3.91115 3.94864 4.13686 4.19594 4.30338 4.39409 4.64163 4.87808 4.89689 4.98300 5.07241 5.18077 5.33556 5.62307 5.66252 5.70609 5.73285 6.29826 7.11122 7.36983 7.83219 8.25632 9.20492 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.019143 B = 0.005291 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.304481 B = 5290.787193 C = 6196.146534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.134 4.134 3 C 0.271 3.729 4 N -0.590 5.590 5 C -0.264 4.264 6 H 0.082 0.918 7 C -0.044 4.044 8 N -0.914 5.914 9 Si 0.954 3.046 10 H -0.277 1.277 11 H -0.302 1.302 12 H -0.282 1.282 13 C 0.181 3.819 14 C -0.071 4.071 15 C -0.090 4.090 16 C -0.096 4.096 17 C -0.048 4.048 18 Cl -0.055 7.055 19 C -0.038 4.038 20 Cl -0.057 7.057 21 C -0.097 4.097 22 H 0.221 0.779 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.246 0.754 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.143 0.857 29 H 0.161 0.839 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.676 7.344 9.519 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.309 5.309 5 C -0.393 4.393 6 H 0.100 0.900 7 C -0.240 4.240 8 N -0.559 5.559 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.229 1.229 12 H -0.208 1.208 13 C 0.055 3.945 14 C -0.074 4.074 15 C -0.109 4.109 16 C -0.115 4.115 17 C -0.076 4.076 18 Cl -0.027 7.027 19 C -0.066 4.066 20 Cl -0.028 7.028 21 C -0.117 4.117 22 H 0.238 0.762 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.161 0.839 29 H 0.178 0.822 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.786 7.483 9.379 14.871 hybrid contribution 0.070 -0.667 -0.888 1.113 sum 8.856 6.816 8.491 14.035 Atomic orbital electron populations 1.25012 0.96389 1.05733 1.03981 1.24649 0.96105 0.95667 0.97215 1.17666 0.82780 0.90763 0.94183 1.44128 1.74546 1.09828 1.02404 1.19437 1.25299 0.92050 1.02545 0.90023 1.25502 0.97215 1.00878 1.00448 1.70275 1.22736 1.45251 1.17624 0.85544 0.78480 0.80027 0.77597 1.20327 1.22902 1.20824 1.19882 0.90629 0.98640 0.85375 1.20978 0.98963 0.92610 0.94866 1.21295 0.91516 1.00839 0.97245 1.21230 0.98399 0.92228 0.99651 1.20816 0.86588 0.93903 1.06263 1.98358 1.23512 1.86267 1.94518 1.20815 0.94533 0.85672 1.05555 1.98360 1.96417 1.12048 1.95963 1.20993 0.95055 0.95572 1.00047 0.76208 0.92216 0.91582 0.94494 0.92173 0.91507 0.83889 0.82187 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.63 19.25 74.32 1.43 -11.20 16 2 C -0.13 -6.25 11.60 31.13 0.36 -5.89 16 3 C 0.27 12.32 5.41 84.58 0.46 12.78 16 4 N -0.59 -26.36 2.48 -716.92 -1.77 -28.14 16 5 C -0.26 -13.08 9.66 84.03 0.81 -12.27 16 6 H 0.08 3.85 7.92 -2.91 -0.02 3.83 16 7 C -0.04 -2.31 4.86 84.86 0.41 -1.90 16 8 N -0.91 -50.88 9.50 21.65 0.21 -50.68 16 9 Si 0.95 42.93 29.61 68.60 2.03 44.96 16 10 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.18 6.42 5.80 85.64 0.50 6.92 16 14 C -0.07 -2.19 5.46 -19.86 -0.11 -2.29 16 15 C -0.09 -2.50 9.70 22.27 0.22 -2.28 16 16 C -0.10 -2.38 9.83 22.29 0.22 -2.16 16 17 C -0.05 -1.26 6.32 22.34 0.14 -1.12 16 18 Cl -0.06 -1.31 27.96 -2.72 -0.08 -1.38 16 19 C -0.04 -1.06 6.32 22.35 0.14 -0.92 16 20 Cl -0.06 -1.44 27.96 -2.72 -0.08 -1.52 16 21 C -0.10 -2.82 9.48 22.29 0.21 -2.61 16 22 H 0.22 7.68 7.80 -4.42 -0.03 7.65 16 23 H 0.06 2.35 8.12 -2.39 -0.02 2.33 16 24 H 0.07 3.40 6.42 -2.39 -0.02 3.39 16 25 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 26 H 0.06 2.04 8.01 -2.39 -0.02 2.02 16 27 H 0.07 2.33 7.98 -2.39 -0.02 2.31 16 28 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 29 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -57.40 301.25 6.25 -51.15 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: 1.15 Total: 8.55 kcal Atomic # 6 Polarization: -27.74 SS G_CDS: 4.79 Total: -22.95 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -1.57 Total: -78.81 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -2.75 SS G_CDS: -0.15 Total: -2.90 kcal Total: -57.40 6.25 -51.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281448137.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.506 kcal (2) G-P(sol) polarization free energy of solvation -57.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds