Wall clock time and date at job start Tue Mar 31 2020 05:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47023 * 226.59498 * 3 2 1 5 5 C 1.36895 * 119.99457 * 270.00106 * 4 3 2 6 6 H 1.07997 * 120.00016 * 130.44587 * 5 4 3 7 7 C 1.38995 * 120.00081 * 310.43788 * 5 4 3 8 8 N 1.31406 * 120.00022 * 172.91969 * 7 5 4 9 9 Si 1.86802 * 120.00032 * 352.91635 * 7 5 4 10 10 H 1.48496 * 109.46970 * 94.97180 * 9 7 5 11 11 H 1.48499 * 109.47209 * 214.97228 * 9 7 5 12 12 H 1.48498 * 109.47049 * 334.97227 * 9 7 5 13 13 C 1.34768 * 120.00242 * 89.99779 * 4 3 2 14 14 O 1.21768 * 120.00059 * 3.83376 * 13 4 3 15 15 C 1.46317 * 120.00301 * 183.83372 * 13 4 3 16 16 S 1.75829 * 125.46448 * 353.32752 * 15 13 4 17 17 C 1.70608 * 91.58996 * 180.02562 * 16 15 13 18 18 C 1.33795 * 111.01324 * 359.97438 * 17 16 15 19 19 C 1.50707 * 122.44382 * 179.97438 * 18 17 16 20 20 C 1.36918 * 125.47027 * 173.35488 * 15 13 4 21 21 Cl 1.73603 * 123.38483 * 359.97438 * 20 15 13 22 22 H 4.40643 * 5.51369 * 180.02562 * 4 1 2 23 23 H 1.08997 * 109.47026 * 106.58885 * 3 2 1 24 24 H 1.09003 * 109.46762 * 346.59299 * 3 2 1 25 25 H 0.96997 * 120.00350 * 185.00119 * 8 7 5 26 26 H 1.08001 * 124.48887 * 179.97438 * 17 16 15 27 27 H 1.08997 * 109.46598 * 270.01937 * 19 18 17 28 28 H 1.08997 * 109.47082 * 30.02035 * 19 18 17 29 29 H 1.09003 * 109.47050 * 150.02759 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.9500 1.0035 5 6 3.3615 2.2548 0.6575 6 1 2.9552 3.0524 1.2618 7 6 4.1155 2.5532 -0.4713 8 7 4.2183 3.7969 -0.8829 9 14 4.9828 1.1863 -1.4034 10 1 4.1264 0.7340 -2.5290 11 1 6.2737 1.6917 -1.9355 12 1 5.2377 0.0464 -0.4864 13 6 3.3587 0.5388 2.2670 14 8 3.2234 -0.6358 2.5582 15 6 3.7653 1.5036 3.2891 16 16 4.1628 3.1915 2.9980 17 6 4.4814 3.4513 4.6538 18 6 4.2945 2.3304 5.3600 19 6 4.5047 2.2698 6.8511 20 6 3.8978 1.2370 4.6255 21 17 3.5949 -0.3237 5.3229 22 1 -1.0501 -0.0003 -0.0001 23 1 3.0093 0.2942 -0.9849 24 1 3.0098 -0.9989 0.2383 25 1 4.6834 3.9972 -1.7102 26 1 4.7927 4.3955 5.0758 27 1 5.5390 1.9975 7.0613 28 1 4.2896 3.2448 7.2883 29 1 3.8377 1.5231 7.2820 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281595227.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:00 Heat of formation + Delta-G solvation = 40.580012 kcal Electronic energy + Delta-G solvation = -17616.290740 eV Core-core repulsion = 14658.627302 eV Total energy + Delta-G solvation = -2957.663438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86371 -39.15688 -37.05118 -36.97374 -34.61678 -33.57496 -31.87383 -29.13920 -28.10620 -27.08562 -24.63016 -21.32733 -20.59501 -19.81236 -19.23442 -18.15259 -17.58101 -16.91090 -16.37963 -16.07332 -15.45297 -15.16912 -14.89930 -14.47033 -14.36640 -14.32024 -13.83265 -13.41975 -13.17496 -13.07087 -12.89571 -12.73933 -12.20112 -12.07125 -11.85652 -11.54885 -11.47920 -11.03069 -10.91882 -10.64189 -9.91121 -9.50628 -9.10584 -8.54683 -6.44239 -0.36507 0.55628 1.13885 1.30656 1.32156 1.37023 1.39988 1.64665 1.73314 1.90778 2.12950 2.26308 2.74530 2.85962 3.56419 3.94374 4.18836 4.19842 4.30398 4.48564 4.63269 4.82533 4.86746 4.99555 5.04012 5.34358 5.38043 5.46864 5.90878 6.03657 6.68407 6.78366 7.17860 7.57788 8.49209 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.018070 B = 0.008045 C = 0.006461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.120723 B = 3479.557578 C = 4332.797892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.232 4.232 3 C 0.205 3.795 4 N -0.471 5.471 5 C -0.358 4.358 6 H 0.104 0.896 7 C 0.058 3.942 8 N -0.867 5.867 9 Si 0.914 3.086 10 H -0.252 1.252 11 H -0.273 1.273 12 H -0.265 1.265 13 C 0.550 3.450 14 O -0.586 6.586 15 C -0.283 4.283 16 S 0.355 5.645 17 C -0.294 4.294 18 C -0.131 4.131 19 C -0.089 4.089 20 C -0.009 4.009 21 Cl -0.043 7.043 22 H 0.258 0.742 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.289 0.711 26 H 0.193 0.807 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 0.282 6.753 6.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.233 4.233 3 C 0.084 3.916 4 N -0.192 5.192 5 C -0.490 4.490 6 H 0.120 0.880 7 C -0.153 4.153 8 N -0.501 5.501 9 Si 0.738 3.262 10 H -0.177 1.177 11 H -0.199 1.199 12 H -0.189 1.189 13 C 0.342 3.658 14 O -0.472 6.472 15 C -0.405 4.405 16 S 0.630 5.370 17 C -0.432 4.432 18 C -0.143 4.143 19 C -0.147 4.147 20 C -0.054 4.054 21 Cl -0.014 7.014 22 H 0.274 0.726 23 H 0.105 0.895 24 H 0.112 0.888 25 H 0.099 0.901 26 H 0.211 0.789 27 H 0.095 0.905 28 H 0.106 0.894 29 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.224 0.719 5.588 5.639 hybrid contribution 0.101 -1.482 0.548 1.583 sum 0.324 -0.763 6.136 6.192 Atomic orbital electron populations 1.25713 0.96513 0.99133 0.98538 1.23829 0.95438 1.01801 1.02279 1.18565 0.85139 0.94932 0.92967 1.43533 1.58172 1.09734 1.07751 1.18921 1.34183 0.81250 1.14614 0.87983 1.25885 0.94219 0.97796 0.97365 1.69635 1.39314 1.19025 1.22087 0.86253 0.79464 0.80524 0.79946 1.17698 1.19896 1.18891 1.17476 0.78791 0.86715 0.82853 1.90705 1.56972 1.17804 1.81670 1.24464 1.17656 1.01969 0.96375 1.85097 1.55460 0.98191 0.98264 1.26619 1.07613 1.03371 1.05575 1.18518 1.05716 0.90749 0.99269 1.20553 1.02621 1.03674 0.87879 1.20380 1.04856 0.88971 0.91168 1.98310 1.94121 1.25630 1.83339 0.72615 0.89541 0.88792 0.90087 0.78938 0.90475 0.89408 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 19.25 74.32 1.43 -4.82 15 2 C -0.23 -9.72 13.67 31.13 0.43 -9.30 15 3 C 0.21 9.15 4.45 84.58 0.38 9.52 15 4 N -0.47 -22.79 1.99 -650.33 -1.29 -24.08 15 5 C -0.36 -17.54 7.36 84.08 0.62 -16.92 15 6 H 0.10 5.19 5.52 -16.39 -0.09 5.10 15 7 C 0.06 2.77 5.45 84.94 0.46 3.24 15 8 N -0.87 -42.83 13.95 21.67 0.30 -42.52 15 9 Si 0.91 38.55 24.77 68.60 1.70 40.25 15 10 H -0.25 -9.93 6.93 99.48 0.69 -9.24 15 11 H -0.27 -11.16 7.11 99.48 0.71 -10.46 15 12 H -0.26 -11.61 6.88 99.48 0.68 -10.92 15 13 C 0.55 27.16 7.58 86.35 0.65 27.81 15 14 O -0.59 -30.53 14.68 -4.56 -0.07 -30.60 15 15 C -0.28 -12.49 6.30 24.06 0.15 -12.34 15 16 S 0.36 13.62 18.34 -56.49 -1.04 12.59 15 17 C -0.29 -9.01 10.67 66.81 0.71 -8.30 15 18 C -0.13 -4.22 5.78 -21.03 -0.12 -4.35 15 19 C -0.09 -2.13 9.86 71.24 0.70 -1.43 15 20 C -0.01 -0.37 6.39 21.80 0.14 -0.23 15 21 Cl -0.04 -1.63 26.21 -2.72 -0.07 -1.70 15 22 H 0.26 5.94 7.80 -4.41 -0.03 5.91 15 23 H 0.09 3.71 3.79 -2.39 -0.01 3.71 15 24 H 0.09 4.13 7.37 -2.39 -0.02 4.11 15 25 H 0.29 13.21 8.32 -92.71 -0.77 12.44 15 26 H 0.19 4.41 8.06 -2.91 -0.02 4.39 15 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 28 H 0.09 1.67 8.12 -2.39 -0.02 1.65 15 29 H 0.06 1.55 7.40 -2.39 -0.02 1.54 15 Total: -1.00 -59.47 282.15 6.16 -53.31 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.08 Total: 9.86 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 5.55 Total: -17.11 kcal Atomic # 7 Polarization: -65.61 SS G_CDS: -0.99 Total: -66.60 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.07 Total: -30.60 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.70 Total: 40.25 kcal Atomic # 16 Polarization: 13.62 SS G_CDS: -1.04 Total: 12.59 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -59.47 6.16 -53.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281595227.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.890 kcal (2) G-P(sol) polarization free energy of solvation -59.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds