Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39845 * 120.06484 * 90.83582 * 3 2 1 5 5 C 1.37626 * 119.94773 * 180.02562 * 4 3 2 6 6 C 1.39231 * 120.08447 * 0.28264 * 5 4 3 7 7 S 1.76198 * 119.93369 * 179.72199 * 6 5 4 8 8 C 1.81404 * 102.99739 * 359.97438 * 7 6 5 9 9 C 1.53005 * 109.46746 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46855 * 60.00411 * 9 8 7 11 11 O 1.42896 * 109.47541 * 300.00163 * 9 8 7 12 12 C 1.50699 * 109.46697 * 180.02562 * 9 8 7 13 13 H 1.07996 * 120.00253 * 359.97438 * 12 9 8 14 14 C 1.37877 * 119.99732 * 180.02562 * 12 9 8 15 15 N 1.31519 * 120.00267 * 359.97438 * 14 12 9 16 16 Si 1.86802 * 120.00046 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.47278 * 59.99882 * 16 14 12 18 18 H 1.48495 * 109.47334 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47345 * 300.00064 * 16 14 12 20 20 C 1.39336 * 120.13130 * 359.44107 * 6 5 4 21 21 Cl 1.73595 * 119.97408 * 180.27872 * 20 6 5 22 22 C 1.37719 * 120.04968 * 0.55180 * 20 6 5 23 23 H 1.07997 * 120.02830 * 0.02562 * 4 3 2 24 24 H 1.08002 * 119.95450 * 179.97438 * 5 4 3 25 25 H 1.08994 * 109.47407 * 299.99994 * 8 7 6 26 26 H 1.09001 * 109.47108 * 60.00377 * 8 7 6 27 27 H 0.96700 * 114.00054 * 300.00229 * 11 9 8 28 28 H 0.96997 * 119.99785 * 180.02562 * 15 14 12 29 29 H 1.07997 * 120.03640 * 179.74463 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.0186 -1.2102 5 6 4.6448 0.0186 -1.2074 6 6 5.3403 -0.0051 -0.0014 7 16 7.1023 -0.0124 -0.0026 8 6 7.5092 0.0158 -1.7702 9 6 9.0294 0.0131 -1.9436 10 1 9.4452 -0.8863 -1.4893 11 8 9.5834 1.1672 -1.3088 12 6 9.3674 0.0371 -3.4120 13 1 8.5771 0.0523 -4.1479 14 6 10.6857 0.0386 -3.8159 15 7 11.6481 0.0195 -2.9198 16 14 11.1048 0.0676 -5.6361 17 1 10.5386 1.2930 -6.2550 18 1 12.5802 0.0651 -5.8045 19 1 10.5288 -1.1316 -6.2959 20 6 4.6458 -0.0173 1.2064 21 17 5.5171 -0.0396 2.7077 22 6 3.2686 -0.0173 1.2101 23 1 2.7301 0.0324 -2.1462 24 1 5.1860 0.0321 -2.1419 25 1 7.0863 -0.8644 -2.2545 26 1 7.0937 0.9153 -2.2244 27 1 9.2572 2.0057 -1.6633 28 1 12.5755 0.0209 -3.2041 29 1 2.7305 -0.0308 2.1463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287668893.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = -9.552351 kcal Electronic energy + Delta-G solvation = -16296.695017 eV Core-core repulsion = 13336.857677 eV Total energy + Delta-G solvation = -2959.837341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.017 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.56950 -36.87297 -36.32556 -36.05406 -32.30052 -31.83692 -31.14142 -29.83474 -25.60672 -24.47067 -23.06953 -21.14358 -19.27344 -17.68489 -17.27078 -16.09465 -15.30424 -14.78340 -14.67254 -14.64434 -14.50731 -14.26479 -13.94943 -13.50546 -13.30750 -13.13161 -12.75141 -12.10944 -11.82678 -11.68822 -11.52639 -11.34180 -11.11174 -10.99684 -10.91894 -10.26810 -9.87408 -9.81979 -9.30960 -9.14318 -8.74230 -8.44678 -7.27194 -6.17913 -4.39252 0.36629 0.90901 1.58710 1.98379 2.48986 2.58407 2.75285 3.19118 3.25815 3.26548 3.51502 3.67188 4.25585 4.44762 4.68115 4.98406 5.08292 5.09498 5.45786 5.55348 5.57279 5.72668 5.78566 5.90934 6.06727 6.27898 6.43162 7.25190 7.41181 7.63139 7.89920 8.61456 9.16781 9.37858 10.85882 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.024451 B = 0.004033 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.886347 B = 6941.222417 C = 7993.252552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.263 3.737 3 C -0.048 4.048 4 C -0.040 4.040 5 C -0.133 4.133 6 C -0.052 4.052 7 S -0.048 6.048 8 C -0.138 4.138 9 C 0.247 3.753 10 H 0.068 0.932 11 O -0.557 6.557 12 C -0.574 4.574 13 H 0.059 0.941 14 C 0.082 3.918 15 N -0.854 5.854 16 Si 0.895 3.105 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.038 4.038 21 Cl -0.044 7.044 22 C -0.040 4.040 23 H 0.139 0.861 24 H 0.146 0.854 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.348 0.652 28 H 0.264 0.736 29 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.906 0.208 5.755 14.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.052 4.052 3 C -0.056 4.056 4 C -0.063 4.063 5 C -0.158 4.158 6 C -0.168 4.168 7 S 0.206 5.794 8 C -0.287 4.287 9 C 0.187 3.813 10 H 0.085 0.915 11 O -0.359 6.359 12 C -0.614 4.614 13 H 0.077 0.923 14 C -0.126 4.126 15 N -0.488 5.488 16 Si 0.722 3.278 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.073 4.073 21 Cl -0.015 7.015 22 C -0.063 4.063 23 H 0.157 0.843 24 H 0.164 0.836 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.192 0.808 28 H 0.074 0.926 29 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.076 -0.287 7.200 14.930 hybrid contribution -0.479 0.374 -2.361 2.438 sum -13.556 0.087 4.839 14.394 Atomic orbital electron populations 1.81257 1.11957 1.09539 1.07194 1.25527 0.92387 0.93438 0.93804 1.15735 0.84339 1.11327 0.94187 1.21123 0.93746 0.94609 0.96799 1.21208 0.94053 1.03404 0.97153 1.22591 1.01170 0.98663 0.94378 1.86408 0.92446 1.86744 1.13836 1.25183 1.07035 1.04879 0.91594 1.19182 0.81318 0.87418 0.93356 0.91483 1.86618 1.71102 1.15298 1.62889 1.21427 0.92470 1.56294 0.91182 0.92302 1.25034 0.96329 0.93516 0.97706 1.70058 0.99770 1.45753 1.33229 0.86635 0.77484 0.78791 0.84899 1.20028 1.21034 1.20029 1.20111 0.91521 1.08711 0.86920 1.98394 1.76029 1.96740 1.30367 1.20855 0.91570 0.96225 0.97689 0.84329 0.83622 0.89387 0.89919 0.80778 0.92570 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.46 18.54 41.84 0.78 -4.69 15 2 C 0.26 2.85 15.33 -22.47 -0.34 2.51 15 3 C -0.05 -0.47 5.74 -106.77 -0.61 -1.08 15 4 C -0.04 -0.37 9.74 -39.20 -0.38 -0.76 15 5 C -0.13 -1.48 9.34 -39.44 -0.37 -1.85 15 6 C -0.05 -0.67 6.13 -38.80 -0.24 -0.91 15 7 S -0.05 -0.76 20.45 -107.50 -2.20 -2.96 15 8 C -0.14 -2.39 3.96 37.16 0.15 -2.24 15 9 C 0.25 5.61 2.88 -27.88 -0.08 5.53 15 10 H 0.07 1.71 8.14 -51.93 -0.42 1.29 15 11 O -0.56 -13.08 12.33 -35.23 -0.43 -13.51 15 12 C -0.57 -14.26 8.76 -34.44 -0.30 -14.56 15 13 H 0.06 1.39 7.74 -52.49 -0.41 0.99 15 14 C 0.08 2.13 5.40 -17.82 -0.10 2.03 15 15 N -0.85 -23.74 12.84 55.43 0.71 -23.03 15 16 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 15 17 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 20 C -0.04 -0.45 6.33 -39.36 -0.25 -0.70 15 21 Cl -0.04 -0.54 27.82 -51.86 -1.44 -1.98 15 22 C -0.04 -0.40 9.52 -39.17 -0.37 -0.77 15 23 H 0.14 0.98 8.06 -52.49 -0.42 0.56 15 24 H 0.15 1.56 5.86 -52.49 -0.31 1.25 15 25 H 0.09 1.42 7.74 -51.93 -0.40 1.02 15 26 H 0.08 1.32 7.74 -51.92 -0.40 0.92 15 27 H 0.35 7.17 9.04 45.56 0.41 7.58 15 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 29 H 0.14 1.13 8.06 -52.49 -0.42 0.70 15 LS Contribution 296.65 15.07 4.47 4.47 Total: -1.00 -28.31 296.65 -7.55 -35.86 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -1.51 Total: 3.88 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -2.90 Total: -12.80 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: 1.49 Total: -27.72 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.43 Total: -13.51 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.20 Total: -2.96 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.44 Total: -1.98 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.31 -7.55 -35.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287668893.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.308 kcal (2) G-P(sol) polarization free energy of solvation -28.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds