Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76201 * 99.99723 * 2 1 4 4 N 1.29495 * 124.48000 * 359.97438 * 3 2 1 5 5 C 1.33007 * 117.83430 * 180.02562 * 4 3 2 6 6 N 1.36189 * 129.70898 * 180.02562 * 5 4 3 7 7 C 1.29742 * 121.63747 * 179.97438 * 6 5 4 8 8 N 1.35745 * 122.32499 * 359.97438 * 7 6 5 9 9 C 1.46498 * 120.02396 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47117 * 90.00135 * 9 8 7 11 11 H 1.07998 * 119.99829 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00061 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99760 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00258 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47071 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47146 * 119.99930 * 14 12 10 17 17 H 1.48493 * 109.47571 * 240.00278 * 14 12 10 18 18 C 1.35023 * 119.94985 * 0.02562 * 8 7 6 19 19 O 1.22027 * 120.72735 * 179.97438 * 18 8 7 20 20 C 1.39272 * 112.19849 * 359.97438 * 5 4 3 21 21 S 1.70761 * 124.47668 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.46547 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47580 * 299.99886 * 1 2 3 24 24 H 1.08999 * 109.47113 * 60.00318 * 1 2 3 25 25 H 1.08010 * 118.83433 * 180.27625 * 7 6 5 26 26 H 1.08997 * 109.47225 * 210.00428 * 9 8 7 27 27 H 1.09000 * 109.47289 * 330.00459 * 9 8 7 28 28 H 0.97005 * 119.99606 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1919 2.6425 -0.0005 5 6 1.5728 3.9169 -0.0009 6 7 0.8182 5.0506 -0.0010 7 6 1.3607 6.2292 -0.0010 8 7 2.7062 6.4089 -0.0004 9 6 3.2647 7.7633 0.0002 10 6 3.4557 8.2273 1.4212 11 1 3.1882 7.5781 2.2418 12 6 3.9730 9.4802 1.6737 13 7 4.2992 10.2705 0.6743 14 14 4.2090 10.0557 3.4350 15 1 3.7666 8.9884 4.3680 16 1 5.6445 10.3553 3.6697 17 1 3.4031 11.2810 3.6677 18 6 3.5293 5.3386 -0.0003 19 8 4.7409 5.4838 -0.0002 20 6 2.9590 4.0517 -0.0002 21 16 3.6700 2.4428 0.0006 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7190 7.0980 0.0035 26 1 4.2262 7.7600 -0.5133 27 1 2.5807 8.4386 -0.5137 28 1 4.6628 11.1521 0.8520 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290815901.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = 38.956097 kcal Electronic energy + Delta-G solvation = -17065.084936 eV Core-core repulsion = 14141.687537 eV Total energy + Delta-G solvation = -2923.397399 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.31319 -38.77452 -36.74337 -34.26843 -32.52101 -30.24690 -29.13612 -27.96578 -25.99742 -24.13421 -23.38083 -21.68148 -19.30302 -17.80574 -17.40487 -17.00995 -16.50997 -15.74134 -15.57174 -14.71528 -14.51424 -14.37658 -13.95239 -13.76115 -13.53287 -12.82024 -12.64767 -12.33266 -12.19461 -11.79437 -11.24803 -11.12748 -10.93430 -10.50181 -10.36325 -10.16849 -9.77688 -9.63393 -9.36870 -9.30921 -8.71058 -8.30342 -7.63515 -6.34131 -4.42039 0.13131 0.68672 1.30222 1.53408 1.68892 1.88536 2.65732 3.16819 3.22252 3.25673 3.33200 3.70612 3.96109 4.24348 4.79599 4.86065 4.89593 4.97699 5.03089 5.29833 5.58045 5.73480 6.36786 6.81205 6.95159 7.11145 7.40155 7.59447 7.76903 8.14552 8.30812 8.60827 9.25244 10.74484 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.035300 B = 0.004245 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.012764 B = 6595.035672 C = 6765.318357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.002 6.002 3 C 0.041 3.959 4 N -0.472 5.472 5 C 0.354 3.646 6 N -0.530 5.530 7 C 0.414 3.586 8 N -0.507 5.507 9 C 0.224 3.776 10 C -0.542 4.542 11 H 0.063 0.937 12 C 0.069 3.931 13 N -0.886 5.886 14 Si 0.907 3.093 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.570 3.430 19 O -0.517 6.517 20 C -0.384 4.384 21 S 0.271 5.729 22 H 0.107 0.893 23 H 0.094 0.906 24 H 0.094 0.906 25 H 0.214 0.786 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.015 -16.276 -2.471 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.228 5.772 3 C -0.346 4.346 4 N -0.193 5.193 5 C 0.110 3.890 6 N -0.257 5.257 7 C 0.124 3.876 8 N -0.224 5.224 9 C 0.105 3.895 10 C -0.581 4.581 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.523 5.523 14 Si 0.733 3.267 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.205 1.205 18 C 0.363 3.637 19 O -0.393 6.393 20 C -0.514 4.514 21 S 0.522 5.478 22 H 0.125 0.875 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.230 0.770 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.694 -17.824 -2.526 18.881 hybrid contribution -0.593 2.368 0.973 2.628 sum -6.287 -15.456 -1.553 16.758 Atomic orbital electron populations 1.23561 0.93098 1.06457 1.07788 1.85658 1.08831 0.91986 1.90761 1.28414 0.97404 1.04362 1.04450 1.65947 1.34077 0.98657 1.20647 1.19217 0.85664 0.90194 0.93937 1.68075 1.35214 0.94848 1.27522 1.24961 0.83179 0.95406 0.84035 1.47194 1.06776 1.12145 1.56295 1.20024 0.96963 0.72649 0.99820 1.21240 1.45078 1.00893 0.90859 0.91859 1.24907 0.94311 0.96102 0.98204 1.69922 1.41945 1.09432 1.31037 0.86296 0.78193 0.78653 0.83519 1.19602 1.20562 1.20536 1.15432 0.87047 0.82674 0.78575 1.90946 1.12551 1.86132 1.49648 1.25863 0.98906 1.00347 1.26251 1.83558 1.03536 0.93505 1.67225 0.87489 0.88714 0.88730 0.76961 0.91875 0.92493 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.93 101.05 1.00 -0.14 15 2 S 0.00 -0.02 22.92 -107.50 -2.46 -2.49 15 3 C 0.04 0.60 7.42 51.78 0.38 0.98 15 4 N -0.47 -7.98 9.76 -13.45 -0.13 -8.12 15 5 C 0.35 6.70 8.14 -157.12 -1.28 5.42 15 6 N -0.53 -9.69 10.46 -13.99 -0.15 -9.84 15 7 C 0.41 7.20 11.46 -90.36 -1.04 6.16 15 8 N -0.51 -10.66 2.58 -122.42 -0.32 -10.98 15 9 C 0.22 5.29 5.14 -5.19 -0.03 5.27 15 10 C -0.54 -14.24 9.39 -34.44 -0.32 -14.56 15 11 H 0.06 1.70 7.81 -52.49 -0.41 1.29 15 12 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 13 N -0.89 -24.30 13.29 55.43 0.74 -23.57 15 14 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 15 15 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 18 C 0.57 12.80 7.44 -15.20 -0.11 12.69 15 19 O -0.52 -13.21 16.79 4.89 0.08 -13.13 15 20 C -0.38 -7.55 6.52 -38.25 -0.25 -7.80 15 21 S 0.27 4.22 23.15 -107.50 -2.49 1.73 15 22 H 0.11 0.57 8.14 -51.91 -0.42 0.15 15 23 H 0.09 0.86 8.14 -51.92 -0.42 0.44 15 24 H 0.09 0.84 8.14 -51.92 -0.42 0.42 15 25 H 0.21 2.80 8.02 -52.48 -0.42 2.38 15 26 H 0.06 1.68 7.45 -51.93 -0.39 1.29 15 27 H 0.06 1.26 8.02 -51.93 -0.42 0.85 15 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -31.64 284.73 -9.23 -40.87 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -2.04 Total: -4.20 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -1.74 Total: 9.75 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.14 Total: -52.49 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -4.95 Total: -0.76 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.64 -9.23 -40.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290815901.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.829 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds