Wall clock time and date at job start Tue Mar 31 2020 05:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76201 * 99.99723 * 2 1 4 4 N 1.29495 * 124.48000 * 359.97438 * 3 2 1 5 5 C 1.33007 * 117.83430 * 180.02562 * 4 3 2 6 6 N 1.36189 * 129.70898 * 180.02562 * 5 4 3 7 7 C 1.29742 * 121.63747 * 179.97438 * 6 5 4 8 8 N 1.35745 * 122.32499 * 359.97438 * 7 6 5 9 9 C 1.46498 * 120.02396 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47117 * 90.00135 * 9 8 7 11 11 H 1.07998 * 119.99829 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00061 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99760 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00258 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47071 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47146 * 119.99930 * 14 12 10 17 17 H 1.48493 * 109.47571 * 240.00278 * 14 12 10 18 18 C 1.35023 * 119.94985 * 0.02562 * 8 7 6 19 19 O 1.22027 * 120.72735 * 179.97438 * 18 8 7 20 20 C 1.39272 * 112.19849 * 359.97438 * 5 4 3 21 21 S 1.70761 * 124.47668 * 179.97438 * 3 2 1 22 22 H 1.09002 * 109.46547 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47580 * 299.99886 * 1 2 3 24 24 H 1.08999 * 109.47113 * 60.00318 * 1 2 3 25 25 H 1.08010 * 118.83433 * 180.27625 * 7 6 5 26 26 H 1.08997 * 109.47225 * 210.00428 * 9 8 7 27 27 H 1.09000 * 109.47289 * 330.00459 * 9 8 7 28 28 H 0.97005 * 119.99606 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.1919 2.6425 -0.0005 5 6 1.5728 3.9169 -0.0009 6 7 0.8182 5.0506 -0.0010 7 6 1.3607 6.2292 -0.0010 8 7 2.7062 6.4089 -0.0004 9 6 3.2647 7.7633 0.0002 10 6 3.4557 8.2273 1.4212 11 1 3.1882 7.5781 2.2418 12 6 3.9730 9.4802 1.6737 13 7 4.2992 10.2705 0.6743 14 14 4.2090 10.0557 3.4350 15 1 3.7666 8.9884 4.3680 16 1 5.6445 10.3553 3.6697 17 1 3.4031 11.2810 3.6677 18 6 3.5293 5.3386 -0.0003 19 8 4.7409 5.4838 -0.0002 20 6 2.9590 4.0517 -0.0002 21 16 3.6700 2.4428 0.0006 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7190 7.0980 0.0035 26 1 4.2262 7.7600 -0.5133 27 1 2.5807 8.4386 -0.5137 28 1 4.6628 11.1521 0.8520 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290815901.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:52 Heat of formation + Delta-G solvation = 19.414709 kcal Electronic energy + Delta-G solvation = -17065.932314 eV Core-core repulsion = 14141.687537 eV Total energy + Delta-G solvation = -2924.244777 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.83616 -40.20911 -38.36876 -35.98698 -34.38328 -31.69057 -30.05088 -29.57287 -27.47447 -25.60070 -25.15464 -23.23596 -20.68346 -19.20324 -19.00715 -18.75400 -17.89829 -17.26915 -17.05470 -16.40141 -15.86767 -15.72867 -15.26708 -15.17446 -14.53415 -14.39841 -13.86938 -13.74729 -13.60860 -13.52268 -13.05992 -12.73312 -12.39791 -12.04503 -11.96785 -11.68800 -11.35388 -11.14793 -10.90665 -10.79224 -10.70047 -9.66341 -8.76157 -8.35802 -6.50424 -1.22275 -0.44431 0.14896 0.15257 0.38392 1.07369 1.12187 1.36885 1.39579 1.49812 1.67079 2.31668 2.39616 2.46786 2.98077 3.33693 3.49316 3.90156 4.25175 4.30571 4.36323 4.62771 4.95213 4.96423 5.26300 5.46724 5.56901 5.78822 5.95552 6.51255 6.65482 6.71519 7.20385 8.72974 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.035300 B = 0.004245 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.012764 B = 6595.035672 C = 6765.318357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S 0.048 5.952 3 C 0.048 3.952 4 N -0.488 5.488 5 C 0.354 3.646 6 N -0.529 5.529 7 C 0.419 3.581 8 N -0.515 5.515 9 C 0.239 3.761 10 C -0.555 4.555 11 H 0.052 0.948 12 C 0.024 3.976 13 N -0.914 5.914 14 Si 0.967 3.033 15 H -0.273 1.273 16 H -0.281 1.281 17 H -0.264 1.264 18 C 0.560 3.440 19 O -0.567 6.567 20 C -0.425 4.425 21 S 0.290 5.710 22 H 0.144 0.856 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.255 0.745 26 H 0.025 0.975 27 H 0.074 0.926 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.768 -18.102 -1.842 20.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.279 5.721 3 C -0.338 4.338 4 N -0.211 5.211 5 C 0.108 3.892 6 N -0.255 5.255 7 C 0.130 3.870 8 N -0.231 5.231 9 C 0.120 3.880 10 C -0.594 4.594 11 H 0.070 0.930 12 C -0.178 4.178 13 N -0.552 5.552 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.207 1.207 17 H -0.188 1.188 18 C 0.356 3.644 19 O -0.448 6.448 20 C -0.554 4.554 21 S 0.542 5.458 22 H 0.163 0.837 23 H 0.108 0.892 24 H 0.110 0.890 25 H 0.271 0.729 26 H 0.043 0.957 27 H 0.092 0.908 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.490 -19.693 -1.903 21.155 hybrid contribution -0.146 2.644 0.738 2.749 sum -7.635 -17.049 -1.165 18.717 Atomic orbital electron populations 1.23763 0.91276 1.08746 1.07423 1.85669 1.10633 0.87328 1.88489 1.29292 0.96789 1.06453 1.01260 1.66110 1.34319 0.97899 1.22756 1.19565 0.85471 0.91200 0.92951 1.68145 1.35067 0.95025 1.27236 1.25781 0.81978 0.96524 0.82674 1.47078 1.08093 1.10938 1.57010 1.19625 0.95812 0.74231 0.98373 1.21429 1.45267 1.00974 0.91686 0.92968 1.25680 0.93932 0.96228 1.01919 1.70000 1.42533 1.09871 1.32812 0.85364 0.78015 0.78512 0.78926 1.19757 1.20727 1.18839 1.15859 0.86683 0.83931 0.77967 1.90893 1.14447 1.86912 1.52524 1.25817 0.99863 1.00747 1.28950 1.83399 1.03829 0.91208 1.67385 0.83749 0.89151 0.88997 0.72943 0.95703 0.90822 0.91802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.93 113.37 1.13 -0.69 15 2 S 0.05 0.84 22.92 -56.49 -1.30 -0.46 15 3 C 0.05 1.31 7.42 130.59 0.97 2.28 15 4 N -0.49 -15.83 9.76 -196.47 -1.92 -17.75 15 5 C 0.35 13.24 8.14 133.85 1.09 14.33 15 6 N -0.53 -18.92 10.46 -198.17 -2.07 -20.99 15 7 C 0.42 14.33 11.46 180.26 2.07 16.40 15 8 N -0.51 -22.16 2.58 -659.17 -1.70 -23.86 15 9 C 0.24 11.66 5.14 85.63 0.44 12.10 15 10 C -0.56 -29.68 9.39 25.60 0.24 -29.44 15 11 H 0.05 2.85 7.81 -2.91 -0.02 2.82 15 12 C 0.02 1.28 5.46 84.65 0.46 1.74 15 13 N -0.91 -50.63 13.29 21.45 0.28 -50.34 15 14 Si 0.97 42.45 29.54 68.60 2.03 44.47 15 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 16 H -0.28 -12.35 7.11 99.48 0.71 -11.65 15 17 H -0.26 -10.83 7.11 99.48 0.71 -10.13 15 18 C 0.56 26.18 7.44 84.82 0.63 26.81 15 19 O -0.57 -30.67 16.79 -5.40 -0.09 -30.76 15 20 C -0.42 -16.99 6.52 23.13 0.15 -16.84 15 21 S 0.29 8.94 23.15 -56.49 -1.31 7.63 15 22 H 0.14 0.83 8.14 -2.39 -0.02 0.81 15 23 H 0.09 1.34 8.14 -2.40 -0.02 1.32 15 24 H 0.09 1.33 8.14 -2.40 -0.02 1.31 15 25 H 0.26 6.19 8.02 -2.91 -0.02 6.17 15 26 H 0.02 1.40 7.45 -2.39 -0.02 1.38 15 27 H 0.07 3.30 8.02 -2.39 -0.02 3.28 15 28 H 0.27 14.15 8.31 -92.70 -0.77 13.38 15 Total: -1.00 -70.20 284.73 2.31 -67.89 By element: Atomic # 1 Polarization: -3.72 SS G_CDS: 1.21 Total: -2.51 kcal Atomic # 6 Polarization: 19.51 SS G_CDS: 7.17 Total: 26.69 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -5.40 Total: -112.94 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.09 Total: -30.76 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 9.77 SS G_CDS: -2.60 Total: 7.17 kcal Total: -70.20 2.31 -67.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290815901.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.303 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds