Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47329 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.46933 * 30.00522 * 3 2 1 6 6 H 1.48504 * 109.46740 * 150.00082 * 3 2 1 7 7 C 1.37883 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46836 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.20830 * 119.99974 * 359.97438 * 11 10 9 13 13 O 1.34266 * 120.00296 * 180.27819 * 11 10 9 14 14 C 1.35920 * 117.00158 * 174.80692 * 13 11 10 15 15 C 1.38713 * 120.04023 * 77.09065 * 14 13 11 16 16 C 1.38341 * 119.91804 * 179.97438 * 15 14 13 17 17 F 1.35098 * 119.99964 * 179.97438 * 16 15 14 18 18 C 1.38524 * 120.00418 * 0.02562 * 16 15 14 19 19 C 1.38206 * 120.08488 * 359.97374 * 18 16 15 20 20 N 1.48020 * 119.95873 * 180.02562 * 19 18 16 21 21 O 1.21798 * 120.00030 * 0.02562 * 20 19 18 22 22 O 1.21802 * 120.00027 * 180.02562 * 20 19 18 23 23 C 1.38174 * 120.08183 * 359.74909 * 19 18 16 24 24 H 0.97003 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46906 * 60.00614 * 9 7 2 26 26 H 1.08989 * 109.47409 * 299.99806 * 9 7 2 27 27 H 1.09001 * 109.47326 * 59.99925 * 10 9 7 28 28 H 1.09003 * 109.47048 * 300.00164 * 10 9 7 29 29 H 1.07999 * 120.03958 * 359.95406 * 15 14 13 30 30 H 1.08005 * 119.95559 * 179.97438 * 18 16 15 31 31 H 1.07995 * 120.00621 * 180.24956 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2834 -4.9672 -0.0011 13 8 2.1629 -6.1300 0.0044 14 6 1.4264 -7.2672 0.1131 15 6 0.7391 -7.7573 -0.9876 16 6 -0.0093 -8.9152 -0.8743 17 9 -0.6798 -9.3937 -1.9451 18 6 -0.0721 -9.5836 0.3374 19 6 0.6126 -9.0955 1.4342 20 7 0.5440 -9.8122 2.7275 21 8 -0.1153 -10.8317 2.8245 22 8 1.1468 -9.3824 3.6947 23 6 1.3658 -7.9424 1.3235 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.7879 -7.2353 -1.9318 30 1 -0.6570 -10.4873 0.4251 31 1 1.9037 -7.5642 2.1802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291402670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -102.931992 kcal Electronic energy + Delta-G solvation = -20945.755556 eV Core-core repulsion = 17110.779724 eV Total energy + Delta-G solvation = -3834.975832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.59966 -42.54929 -41.50312 -39.09322 -36.99266 -36.86091 -33.81247 -32.30195 -31.53693 -30.83079 -27.15826 -26.51853 -24.13098 -23.21643 -22.20934 -20.59082 -19.63191 -19.13556 -17.90961 -17.85691 -17.52302 -17.24693 -17.10882 -16.49596 -16.28198 -15.88351 -15.59324 -14.59148 -14.22382 -13.71046 -13.38668 -13.04376 -12.84657 -12.62645 -12.39500 -11.90218 -11.65824 -11.50279 -11.43241 -11.35992 -11.07094 -10.76883 -10.50497 -10.27025 -10.06207 -9.83569 -9.49730 -9.34030 -8.51034 -6.14573 -4.20739 -0.65951 0.12214 0.84421 0.89154 2.22960 2.27352 2.86263 3.23809 3.30820 3.32992 3.37037 3.99101 4.02746 4.07581 4.19764 4.34426 4.59510 4.97873 5.12149 5.21453 5.25195 5.33718 5.65425 5.82829 5.91126 5.99221 6.26849 6.52696 7.29325 7.48182 7.51165 7.79554 7.83266 8.16524 8.85639 9.44596 10.96239 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.003312 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.828832 B = 8453.063048 C = 9057.849118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.032 3.968 10 C -0.098 4.098 11 C 0.457 3.543 12 O -0.479 6.479 13 O -0.295 6.295 14 C 0.133 3.867 15 C -0.109 4.109 16 C 0.126 3.874 17 F -0.115 7.115 18 C -0.099 4.099 19 C -0.003 4.003 20 N 0.029 4.971 21 O -0.150 6.150 22 O -0.144 6.144 23 C -0.071 4.071 24 H 0.264 0.736 25 H 0.027 0.973 26 H 0.028 0.972 27 H 0.101 0.899 28 H 0.100 0.900 29 H 0.163 0.837 30 H 0.171 0.829 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -18.535 -0.997 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.005 4.005 10 C -0.136 4.136 11 C 0.301 3.699 12 O -0.361 6.361 13 O -0.212 6.212 14 C 0.090 3.910 15 C -0.128 4.128 16 C 0.106 3.894 17 F -0.093 7.093 18 C -0.118 4.118 19 C -0.086 4.086 20 N 0.551 4.449 21 O -0.367 6.367 22 O -0.362 6.362 23 C -0.090 4.090 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.181 0.819 30 H 0.188 0.812 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.554 -18.071 -1.688 18.329 hybrid contribution 0.159 0.573 0.045 0.597 sum 2.713 -17.498 -1.642 17.783 Atomic orbital electron populations 1.69977 1.06153 1.27028 1.49432 1.25019 0.94872 0.99458 0.94860 0.86510 0.79776 0.83014 0.78211 1.20529 1.21101 1.19690 1.21091 0.93121 0.90362 1.52505 0.92120 1.19086 0.93175 0.89141 0.99124 1.21944 1.00920 0.85886 1.04824 1.25647 0.88422 0.84428 0.71429 1.90717 1.15558 1.86318 1.43509 1.84868 1.39380 1.12776 1.84225 1.17801 0.94022 0.88024 0.91179 1.21821 0.94565 0.95091 1.01325 1.16804 0.95217 0.93631 0.83746 1.91613 1.77670 1.87332 1.52727 1.20892 0.99284 1.01865 0.89793 1.20347 1.06217 0.97048 0.84992 1.43372 0.98938 1.00347 1.02227 1.94557 1.39036 1.12543 1.90527 1.94591 1.43652 1.70025 1.27919 1.21052 0.96371 0.92761 0.98845 0.92675 0.95417 0.95407 0.88044 0.88139 0.81939 0.81186 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.53 -13.97 9.11 -34.44 -0.31 -14.29 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.77 4.26 -27.88 -0.12 0.65 16 10 C -0.10 -1.74 5.75 -27.88 -0.16 -1.90 16 11 C 0.46 7.66 7.83 36.00 0.28 7.94 16 12 O -0.48 -9.57 15.48 -18.75 -0.29 -9.86 16 13 O -0.30 -4.02 10.03 -23.61 -0.24 -4.26 16 14 C 0.13 1.63 5.13 -39.22 -0.20 1.42 16 15 C -0.11 -1.18 9.55 -39.37 -0.38 -1.56 16 16 C 0.13 1.25 7.30 -39.44 -0.29 0.96 16 17 F -0.12 -1.13 17.27 2.25 0.04 -1.09 16 18 C -0.10 -0.94 9.53 -39.49 -0.38 -1.31 16 19 C 0.00 -0.03 6.85 -79.98 -0.55 -0.58 16 20 N 0.03 0.36 4.45 33.95 0.15 0.51 16 21 O -0.15 -1.88 18.44 -29.46 -0.54 -2.42 16 22 O -0.14 -1.90 18.45 -29.46 -0.54 -2.44 16 23 C -0.07 -0.80 9.49 -39.42 -0.37 -1.17 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 26 H 0.03 0.74 8.10 -51.94 -0.42 0.31 16 27 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 28 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.17 1.28 7.60 -52.48 -0.40 0.89 16 31 H 0.17 1.74 7.61 -52.49 -0.40 1.34 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -30.08 300.33 -6.20 -36.28 By element: Atomic # 1 Polarization: -0.90 SS G_CDS: -2.45 Total: -3.34 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -2.57 Total: -8.28 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.89 Total: -24.62 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.61 Total: -18.99 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.08 -6.20 -36.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291402670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.650 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds