Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00114 * 2 1 4 4 H 1.48500 * 109.47329 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.46933 * 30.00522 * 3 2 1 6 6 H 1.48504 * 109.46740 * 150.00082 * 3 2 1 7 7 C 1.37883 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99661 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46836 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47180 * 180.02562 * 10 9 7 12 12 O 1.20830 * 119.99974 * 359.97438 * 11 10 9 13 13 O 1.34266 * 120.00296 * 180.27819 * 11 10 9 14 14 C 1.35920 * 117.00158 * 174.80692 * 13 11 10 15 15 C 1.38713 * 120.04023 * 77.09065 * 14 13 11 16 16 C 1.38341 * 119.91804 * 179.97438 * 15 14 13 17 17 F 1.35098 * 119.99964 * 179.97438 * 16 15 14 18 18 C 1.38524 * 120.00418 * 0.02562 * 16 15 14 19 19 C 1.38206 * 120.08488 * 359.97374 * 18 16 15 20 20 N 1.48020 * 119.95873 * 180.02562 * 19 18 16 21 21 O 1.21798 * 120.00030 * 0.02562 * 20 19 18 22 22 O 1.21802 * 120.00027 * 180.02562 * 20 19 18 23 23 C 1.38174 * 120.08183 * 359.74909 * 19 18 16 24 24 H 0.97003 * 120.00216 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46906 * 60.00614 * 9 7 2 26 26 H 1.08989 * 109.47409 * 299.99806 * 9 7 2 27 27 H 1.09001 * 109.47326 * 59.99925 * 10 9 7 28 28 H 1.09003 * 109.47048 * 300.00164 * 10 9 7 29 29 H 1.07999 * 120.03958 * 359.95406 * 15 14 13 30 30 H 1.08005 * 119.95559 * 179.97438 * 18 16 15 31 31 H 1.07995 * 120.00621 * 180.24956 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4917 -4.9672 -0.0012 12 8 0.2834 -4.9672 -0.0011 13 8 2.1629 -6.1300 0.0044 14 6 1.4264 -7.2672 0.1131 15 6 0.7391 -7.7573 -0.9876 16 6 -0.0093 -8.9152 -0.8743 17 9 -0.6798 -9.3937 -1.9451 18 6 -0.0721 -9.5836 0.3374 19 6 0.6126 -9.0955 1.4342 20 7 0.5440 -9.8122 2.7275 21 8 -0.1153 -10.8317 2.8245 22 8 1.1468 -9.3824 3.6947 23 6 1.3658 -7.9424 1.3235 24 1 -0.4850 0.8401 0.0004 25 1 0.6240 -2.5567 -0.8904 26 1 0.6247 -2.5572 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8718 -3.6044 -0.8905 29 1 0.7879 -7.2353 -1.9318 30 1 -0.6570 -10.4873 0.4251 31 1 1.9037 -7.5642 2.1802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291402670.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -118.207742 kcal Electronic energy + Delta-G solvation = -20946.417962 eV Core-core repulsion = 17110.779724 eV Total energy + Delta-G solvation = -3835.638238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.073 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.40226 -43.50826 -42.66144 -40.14792 -38.20261 -37.86108 -35.70128 -33.41106 -33.02948 -31.88954 -28.26370 -28.09103 -25.49463 -24.12727 -23.57487 -21.99616 -20.71398 -20.09248 -19.22570 -18.83476 -18.54005 -18.51626 -18.00042 -17.76106 -17.32619 -17.00428 -16.82938 -16.49424 -15.24398 -15.05517 -14.57685 -14.30822 -14.07440 -13.89984 -13.53455 -13.31313 -12.93811 -12.84851 -12.70727 -12.53448 -12.45821 -12.43261 -12.02817 -11.90811 -11.69921 -11.33471 -10.91094 -10.58480 -10.41741 -8.21297 -6.34552 -1.58280 -0.77087 -0.10009 -0.03824 0.90719 1.23014 1.45282 1.45987 1.57111 1.88756 2.42273 2.51267 3.08133 3.13763 3.13788 3.22332 3.34247 3.69329 3.98554 4.15030 4.33328 4.40305 4.42987 4.46458 4.70194 4.89834 5.02485 5.17889 5.46304 5.52231 5.78882 6.10409 6.29222 6.55619 6.83971 7.36317 8.90998 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025804 B = 0.003312 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.828832 B = 8453.063048 C = 9057.849118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.035 3.965 10 C -0.090 4.090 11 C 0.469 3.531 12 O -0.518 6.518 13 O -0.279 6.279 14 C 0.106 3.894 15 C -0.104 4.104 16 C 0.130 3.870 17 F -0.112 7.112 18 C -0.079 4.079 19 C -0.011 4.011 20 N 0.030 4.970 21 O -0.143 6.143 22 O -0.169 6.169 23 C -0.066 4.066 24 H 0.263 0.737 25 H -0.006 1.006 26 H -0.008 1.008 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.172 0.828 30 H 0.194 0.806 31 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 -19.284 -1.418 19.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.098 0.902 9 C -0.002 4.002 10 C -0.127 4.127 11 C 0.314 3.686 12 O -0.403 6.403 13 O -0.195 6.195 14 C 0.063 3.937 15 C -0.123 4.123 16 C 0.110 3.890 17 F -0.090 7.090 18 C -0.098 4.098 19 C -0.094 4.094 20 N 0.550 4.450 21 O -0.363 6.363 22 O -0.382 6.382 23 C -0.085 4.085 24 H 0.072 0.928 25 H 0.012 0.988 26 H 0.010 0.990 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.190 0.810 30 H 0.211 0.789 31 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.077 -18.824 -2.082 19.372 hybrid contribution -0.351 0.646 0.130 0.747 sum 3.726 -18.178 -1.951 18.658 Atomic orbital electron populations 1.70140 1.08189 1.27922 1.51254 1.26045 0.95655 1.03748 0.94578 0.85363 0.78751 0.77943 0.78475 1.19804 1.21489 1.17892 1.21634 0.94236 0.91123 1.51060 0.90160 1.18855 0.93753 0.91795 0.95808 1.21653 0.99406 0.84269 1.07331 1.25255 0.87568 0.85284 0.70454 1.90710 1.17139 1.87073 1.45403 1.84812 1.38639 1.12402 1.83660 1.17893 0.95811 0.87829 0.92123 1.21969 0.93721 0.95247 1.01352 1.16687 0.95084 0.93336 0.83930 1.91631 1.77542 1.87218 1.52589 1.21130 0.97874 1.01956 0.88865 1.20327 1.07097 0.97261 0.84761 1.43502 0.98660 1.00283 1.02519 1.94541 1.38586 1.12534 1.90639 1.94598 1.44573 1.70455 1.28582 1.21101 0.96001 0.92670 0.98735 0.92801 0.98754 0.99001 0.85600 0.85452 0.81011 0.78858 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 3 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 4 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.54 -28.31 9.11 25.60 0.23 -28.08 16 8 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 9 C 0.04 1.74 4.26 29.85 0.13 1.87 16 10 C -0.09 -3.06 5.75 29.85 0.17 -2.89 16 11 C 0.47 15.43 7.83 71.24 0.56 15.99 16 12 O -0.52 -20.99 15.48 21.95 0.34 -20.66 16 13 O -0.28 -7.21 10.03 4.57 0.05 -7.16 16 14 C 0.11 2.46 5.13 22.50 0.12 2.58 16 15 C -0.10 -2.09 9.55 22.41 0.21 -1.88 16 16 C 0.13 2.29 7.30 22.36 0.16 2.46 16 17 F -0.11 -1.94 17.27 44.97 0.78 -1.17 16 18 C -0.08 -1.31 9.53 22.33 0.21 -1.10 16 19 C -0.01 -0.23 6.85 36.35 0.25 0.01 16 20 N 0.03 0.71 4.45 -46.51 -0.21 0.50 16 21 O -0.14 -3.34 18.44 18.89 0.35 -2.99 16 22 O -0.17 -4.40 18.45 18.88 0.35 -4.05 16 23 C -0.07 -1.41 9.49 22.37 0.21 -1.19 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.08 16 25 H -0.01 -0.33 8.10 -2.39 -0.02 -0.35 16 26 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 27 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.13 3.69 8.14 -2.39 -0.02 3.67 16 29 H 0.17 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.19 2.30 7.60 -2.91 -0.02 2.28 16 31 H 0.18 3.46 7.61 -2.91 -0.02 3.44 16 Total: -1.00 -65.89 300.33 7.86 -58.03 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: 1.18 Total: 1.16 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: 2.72 Total: -11.90 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.08 Total: -55.16 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: 1.08 Total: -34.85 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -65.89 7.86 -58.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291402670.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.182 kcal (2) G-P(sol) polarization free energy of solvation -65.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds