Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 N 1.46493 * 109.47299 * 124.72356 * 3 2 1 5 5 C 1.46504 * 120.00190 * 90.00222 * 4 3 2 6 6 C 1.50700 * 109.47006 * 89.99737 * 5 4 3 7 7 H 1.07990 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99619 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00220 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99747 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47203 * 89.99843 * 10 8 6 12 12 H 1.48499 * 109.47004 * 209.99969 * 10 8 6 13 13 H 1.48496 * 109.46991 * 329.99646 * 10 8 6 14 14 C 1.37948 * 120.00252 * 270.00233 * 4 3 2 15 15 N 1.30122 * 124.71804 * 180.02562 * 14 4 3 16 16 C 1.31114 * 117.24758 * 179.97438 * 15 14 4 17 17 Cl 1.73603 * 123.02380 * 180.02562 * 16 15 14 18 18 C 1.36832 * 113.95567 * 0.02562 * 16 15 14 19 19 C 1.43205 * 126.11310 * 179.97438 * 18 16 15 20 20 N 7.36230 * 79.47880 * 57.83894 * 2 1 3 21 21 S 1.70903 * 124.71343 * 359.72331 * 14 4 3 22 22 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 24 24 H 1.08000 * 120.00336 * 179.72373 * 2 1 3 25 25 H 1.08997 * 109.47325 * 244.72857 * 3 2 1 26 26 H 1.09004 * 109.46539 * 4.72066 * 3 2 1 27 27 H 1.08997 * 109.47298 * 210.00318 * 5 4 3 28 28 H 1.09004 * 109.46711 * 330.00130 * 5 4 3 29 29 H 0.97002 * 120.00000 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9890 1.3346 1.1352 5 6 4.3549 0.8280 0.9801 6 6 5.2594 1.9493 0.5376 7 1 4.8571 2.9401 0.3874 8 6 6.6004 1.7099 0.3246 9 7 7.0901 0.5031 0.5071 10 14 7.7217 3.0999 -0.2232 11 1 8.2869 3.7795 0.9702 12 1 8.8263 2.5488 -1.0485 13 1 6.9432 4.0765 -1.0266 14 6 2.5745 1.8395 2.3502 15 7 3.3178 1.9100 3.4159 16 6 2.7733 2.4182 4.4949 17 17 3.6272 2.5837 5.9974 18 6 1.4716 2.8064 4.3304 19 6 0.6318 3.3903 5.3327 20 7 -0.0344 3.8531 6.1278 21 16 1.0155 2.4660 2.6630 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5401 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0045 25 1 2.6251 1.4004 -0.9293 26 1 1.3582 2.1319 0.0846 27 1 4.7061 0.4324 1.9331 28 1 4.3657 0.0356 0.2317 29 1 8.0337 0.3348 0.3576 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291640761.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = 96.600413 kcal Electronic energy + Delta-G solvation = -16902.263229 eV Core-core repulsion = 13979.321769 eV Total energy + Delta-G solvation = -2922.941460 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.62753 -37.45795 -36.33936 -36.15424 -33.68020 -32.54744 -29.83992 -27.98351 -26.46002 -24.23759 -22.66324 -20.77522 -19.94192 -18.69430 -17.38094 -16.64826 -16.14776 -15.32474 -15.12212 -14.78652 -14.40268 -13.93586 -13.75601 -13.09209 -13.01641 -12.80483 -12.57561 -12.05050 -11.88128 -11.65163 -11.40749 -11.29808 -11.07772 -10.84288 -10.77018 -10.31814 -10.08282 -9.56348 -9.36465 -9.32269 -9.01171 -8.60296 -7.25684 -6.21177 -4.28977 0.62094 1.00668 1.34678 2.03304 2.22742 2.78634 3.15125 3.22202 3.29298 3.30239 3.43848 3.51984 4.26307 4.31109 4.86311 4.92693 5.10675 5.13472 5.37130 5.59258 5.72744 5.87222 6.33160 6.54205 6.69136 7.09417 7.23204 7.53024 7.66372 7.73247 7.95359 8.04172 8.73316 9.36997 10.85325 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.006645 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.237284 B = 4212.554268 C = 5675.571269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.170 4.170 3 C 0.138 3.862 4 N -0.525 5.525 5 C 0.249 3.751 6 C -0.534 4.534 7 H 0.060 0.940 8 C 0.068 3.932 9 N -0.890 5.890 10 Si 0.899 3.101 11 H -0.278 1.278 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.371 3.629 15 N -0.536 5.536 16 C 0.267 3.733 17 Cl 0.000 7.000 18 C -0.280 4.280 19 C 0.310 3.690 20 N -0.432 5.432 21 S 0.153 5.847 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.118 0.882 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.043 0.957 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 0.080 -0.094 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.190 4.190 3 C 0.015 3.985 4 N -0.234 5.234 5 C 0.129 3.871 6 C -0.573 4.573 7 H 0.078 0.922 8 C -0.136 4.136 9 N -0.528 5.528 10 Si 0.727 3.273 11 H -0.204 1.204 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.001 3.999 15 N -0.262 5.262 16 C 0.093 3.907 17 Cl 0.028 6.972 18 C -0.410 4.410 19 C -0.004 4.004 20 N -0.111 5.111 21 S 0.402 5.598 22 H 0.116 0.884 23 H 0.119 0.881 24 H 0.136 0.864 25 H 0.129 0.871 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.055 0.501 0.254 12.068 hybrid contribution 1.758 0.549 0.313 1.868 sum -10.297 1.050 0.568 10.366 Atomic orbital electron populations 1.23876 0.95595 1.02102 1.00174 1.23419 0.96175 0.99289 1.00085 1.20862 0.92046 0.95108 0.90474 1.47152 1.15085 1.57418 1.03715 1.19707 0.73119 0.94854 0.99396 1.21312 0.93240 0.95761 1.46972 0.92155 1.24887 0.97795 0.95853 0.95055 1.69913 1.14406 1.20162 1.48287 0.86476 0.80213 0.81899 0.78746 1.20360 1.21065 1.19849 1.23402 0.92123 0.93819 0.90530 1.65641 1.34834 1.27817 0.97860 1.20556 0.86814 0.94097 0.89199 1.98406 1.77721 1.95472 1.25554 1.20305 0.96054 1.27737 0.96865 1.23741 0.92573 0.92028 0.92087 1.81214 1.08798 1.12028 1.09110 1.83630 1.12768 1.61283 1.02147 0.88413 0.88090 0.86432 0.87090 0.90691 0.92668 0.93914 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 14.32 29.02 0.42 -1.30 15 2 C -0.17 -2.00 9.85 -36.02 -0.35 -2.35 15 3 C 0.14 1.87 5.80 -5.19 -0.03 1.84 15 4 N -0.53 -9.41 2.53 -178.89 -0.45 -9.86 15 5 C 0.25 5.59 5.27 -5.19 -0.03 5.57 15 6 C -0.53 -13.45 9.39 -34.44 -0.32 -13.77 15 7 H 0.06 1.53 7.81 -52.49 -0.41 1.12 15 8 C 0.07 1.76 5.46 -17.82 -0.10 1.67 15 9 N -0.89 -24.30 13.29 55.43 0.74 -23.57 15 10 Si 0.90 20.42 29.54 -169.99 -5.02 15.39 15 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 14 C 0.37 6.59 7.71 -87.97 -0.68 5.92 15 15 N -0.54 -10.60 9.73 -11.82 -0.11 -10.72 15 16 C 0.27 4.69 7.41 -18.37 -0.14 4.56 15 17 Cl 0.00 0.00 28.82 -51.86 -1.49 -1.49 15 18 C -0.28 -4.45 6.39 -38.16 -0.24 -4.70 15 19 C 0.31 4.96 15.43 -22.47 -0.35 4.61 15 20 N -0.43 -7.29 18.54 41.83 0.78 -6.51 15 21 S 0.15 2.15 21.60 -107.50 -2.32 -0.17 15 22 H 0.10 0.83 7.84 -52.48 -0.41 0.41 15 23 H 0.10 0.84 8.06 -52.49 -0.42 0.42 15 24 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 25 H 0.11 1.51 8.07 -51.93 -0.42 1.09 15 26 H 0.07 0.87 6.66 -51.93 -0.35 0.52 15 27 H 0.06 1.40 7.59 -51.93 -0.39 1.01 15 28 H 0.04 0.97 8.07 -51.93 -0.42 0.55 15 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 15 LS Contribution 302.85 15.07 4.56 4.56 Total: -1.00 -27.74 302.85 -7.53 -35.27 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: -2.38 Total: -4.94 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.82 Total: 2.04 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: 0.95 Total: -50.66 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.32 Total: -0.17 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.49 Total: -1.49 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.74 -7.53 -35.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291640761.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.867 kcal (2) G-P(sol) polarization free energy of solvation -27.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds