Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00304 * 2 1 4 4 N 1.46493 * 109.47299 * 124.72356 * 3 2 1 5 5 C 1.46504 * 120.00190 * 90.00222 * 4 3 2 6 6 C 1.50700 * 109.47006 * 89.99737 * 5 4 3 7 7 H 1.07990 * 119.99992 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99619 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00220 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99747 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47203 * 89.99843 * 10 8 6 12 12 H 1.48499 * 109.47004 * 209.99969 * 10 8 6 13 13 H 1.48496 * 109.46991 * 329.99646 * 10 8 6 14 14 C 1.37948 * 120.00252 * 270.00233 * 4 3 2 15 15 N 1.30122 * 124.71804 * 180.02562 * 14 4 3 16 16 C 1.31114 * 117.24758 * 179.97438 * 15 14 4 17 17 Cl 1.73603 * 123.02380 * 180.02562 * 16 15 14 18 18 C 1.36832 * 113.95567 * 0.02562 * 16 15 14 19 19 C 1.43205 * 126.11310 * 179.97438 * 18 16 15 20 20 N 7.36230 * 79.47880 * 57.83894 * 2 1 3 21 21 S 1.70903 * 124.71343 * 359.72331 * 14 4 3 22 22 H 1.08004 * 119.99740 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 24 24 H 1.08000 * 120.00336 * 179.72373 * 2 1 3 25 25 H 1.08997 * 109.47325 * 244.72857 * 3 2 1 26 26 H 1.09004 * 109.46539 * 4.72066 * 3 2 1 27 27 H 1.08997 * 109.47298 * 210.00318 * 5 4 3 28 28 H 1.09004 * 109.46711 * 330.00130 * 5 4 3 29 29 H 0.97002 * 120.00000 * 180.02562 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9890 1.3346 1.1352 5 6 4.3549 0.8280 0.9801 6 6 5.2594 1.9493 0.5376 7 1 4.8571 2.9401 0.3874 8 6 6.6004 1.7099 0.3246 9 7 7.0901 0.5031 0.5071 10 14 7.7217 3.0999 -0.2232 11 1 8.2869 3.7795 0.9702 12 1 8.8263 2.5488 -1.0485 13 1 6.9432 4.0765 -1.0266 14 6 2.5745 1.8395 2.3502 15 7 3.3178 1.9100 3.4159 16 6 2.7733 2.4182 4.4949 17 17 3.6272 2.5837 5.9974 18 6 1.4716 2.8064 4.3304 19 6 0.6318 3.3903 5.3327 20 7 -0.0344 3.8531 6.1278 21 16 1.0155 2.4660 2.6630 22 1 -0.5400 0.9354 -0.0004 23 1 -0.5401 -0.9353 0.0004 24 1 1.8500 -0.9353 0.0045 25 1 2.6251 1.4004 -0.9293 26 1 1.3582 2.1319 0.0846 27 1 4.7061 0.4324 1.9331 28 1 4.3657 0.0356 0.2317 29 1 8.0337 0.3348 0.3576 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291640761.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = 82.431435 kcal Electronic energy + Delta-G solvation = -16902.877642 eV Core-core repulsion = 13979.321769 eV Total energy + Delta-G solvation = -2923.555873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98413 -38.74518 -37.62891 -37.46457 -35.14939 -34.04808 -31.20399 -29.66690 -27.62449 -25.89176 -24.09422 -22.16767 -20.87301 -20.01249 -18.75356 -18.52183 -17.38984 -16.77266 -16.58720 -16.22402 -15.55184 -15.39350 -14.91749 -14.35465 -14.31396 -14.23269 -14.11636 -13.46799 -13.22246 -13.10278 -12.91657 -12.73230 -12.54428 -12.26801 -12.18679 -12.04579 -11.72757 -10.81612 -10.71114 -10.60067 -10.46348 -10.24206 -8.65852 -8.14084 -6.32409 -0.69539 -0.25507 0.04960 0.82851 1.25285 1.40901 1.42571 1.45621 1.52442 1.85920 2.16701 2.21626 2.42253 2.96010 3.12898 3.68669 3.93756 4.00943 4.22834 4.52262 4.71768 4.83971 5.09005 5.25143 5.60771 5.71021 5.75033 5.82433 6.04383 6.06485 6.36161 6.70078 6.79737 7.36847 8.86972 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.006645 C = 0.004932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.237284 B = 4212.554268 C = 5675.571269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.197 4.197 3 C 0.136 3.864 4 N -0.535 5.535 5 C 0.269 3.731 6 C -0.537 4.537 7 H 0.057 0.943 8 C 0.018 3.982 9 N -0.923 5.923 10 Si 0.956 3.044 11 H -0.283 1.283 12 H -0.280 1.280 13 H -0.263 1.263 14 C 0.342 3.658 15 N -0.579 5.579 16 C 0.251 3.749 17 Cl 0.002 6.998 18 C -0.281 4.281 19 C 0.322 3.678 20 N -0.442 5.442 21 S 0.258 5.742 22 H 0.117 0.883 23 H 0.118 0.882 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.099 0.901 27 H 0.019 0.981 28 H 0.033 0.967 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.209 1.142 -0.711 13.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.216 4.216 3 C 0.015 3.985 4 N -0.244 5.244 5 C 0.147 3.853 6 C -0.576 4.576 7 H 0.075 0.925 8 C -0.182 4.182 9 N -0.563 5.563 10 Si 0.782 3.218 11 H -0.209 1.209 12 H -0.206 1.206 13 H -0.187 1.187 14 C -0.027 4.027 15 N -0.305 5.305 16 C 0.077 3.923 17 Cl 0.030 6.970 18 C -0.410 4.410 19 C 0.007 3.993 20 N -0.122 5.122 21 S 0.508 5.492 22 H 0.135 0.865 23 H 0.136 0.864 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.117 0.883 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.283 1.579 -0.371 14.375 hybrid contribution 2.276 0.228 0.560 2.355 sum -12.007 1.806 0.189 12.143 Atomic orbital electron populations 1.24158 0.94616 1.03825 0.96257 1.23200 0.96913 0.97879 1.03624 1.21070 0.91718 0.97010 0.88687 1.46979 1.14239 1.58067 1.05130 1.19055 0.75578 0.93828 0.96825 1.21610 0.93825 0.96201 1.45921 0.92519 1.25649 0.99354 0.97787 0.95415 1.70019 1.14627 1.21880 1.49741 0.85577 0.78604 0.79465 0.78157 1.20922 1.20585 1.18728 1.23649 0.94408 0.94588 0.90023 1.65610 1.37090 1.28790 0.99016 1.20596 0.87491 0.95026 0.89157 1.98397 1.77888 1.95481 1.25226 1.20575 0.95538 1.26554 0.98363 1.23621 0.92190 0.91708 0.91804 1.81235 1.09399 1.12256 1.09286 1.83158 1.08239 1.58571 0.99279 0.86496 0.86419 0.87820 0.87835 0.88279 0.96295 0.94901 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 14.32 67.79 0.97 -1.40 15 2 C -0.20 -4.31 9.85 25.65 0.25 -4.06 15 3 C 0.14 3.53 5.80 85.64 0.50 4.03 15 4 N -0.53 -19.12 2.53 -719.89 -1.82 -20.94 15 5 C 0.27 12.51 5.27 85.63 0.45 12.96 15 6 C -0.54 -27.49 9.39 25.60 0.24 -27.25 15 7 H 0.06 2.88 7.81 -2.92 -0.02 2.86 15 8 C 0.02 0.94 5.46 84.65 0.46 1.41 15 9 N -0.92 -51.75 13.29 21.45 0.28 -51.46 15 10 Si 0.96 42.11 29.54 68.60 2.03 44.14 15 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 15 12 H -0.28 -12.04 7.11 99.48 0.71 -11.34 15 13 H -0.26 -11.02 7.11 99.48 0.71 -10.31 15 14 C 0.34 11.86 7.71 179.42 1.38 13.25 15 15 N -0.58 -22.96 9.73 -191.30 -1.86 -24.82 15 16 C 0.25 8.66 7.41 84.47 0.63 9.29 15 17 Cl 0.00 0.05 28.82 -2.72 -0.08 -0.02 15 18 C -0.28 -8.38 6.39 23.19 0.15 -8.23 15 19 C 0.32 9.58 15.43 88.33 1.36 10.95 15 20 N -0.44 -14.00 18.54 19.00 0.35 -13.65 15 21 S 0.26 6.48 21.60 -56.49 -1.22 5.26 15 22 H 0.12 1.40 7.84 -2.91 -0.02 1.38 15 23 H 0.12 1.50 8.06 -2.91 -0.02 1.48 15 24 H 0.10 2.55 8.06 -2.91 -0.02 2.53 15 25 H 0.10 2.78 8.07 -2.39 -0.02 2.76 15 26 H 0.10 2.00 6.66 -2.39 -0.02 1.99 15 27 H 0.02 1.01 7.59 -2.39 -0.02 0.99 15 28 H 0.03 1.57 8.07 -2.38 -0.02 1.55 15 29 H 0.27 14.19 8.31 -92.71 -0.77 13.42 15 Total: -1.00 -60.42 302.85 5.27 -55.16 By element: Atomic # 1 Polarization: -5.79 SS G_CDS: 1.19 Total: -4.61 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 6.39 Total: 10.95 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -3.04 Total: -110.87 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.22 Total: 5.26 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.02 kcal Total: -60.42 5.27 -55.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291640761.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.587 kcal (2) G-P(sol) polarization free energy of solvation -60.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds