Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00423 * 2 1 4 4 N 1.46902 * 109.47037 * 124.51120 * 3 2 1 5 5 C 1.46903 * 110.99886 * 294.59651 * 4 3 2 6 6 C 1.50706 * 109.47196 * 288.22135 * 5 4 3 7 7 H 1.08002 * 119.99425 * 354.62416 * 6 5 4 8 8 C 1.37868 * 120.00103 * 174.61640 * 6 5 4 9 9 N 1.31519 * 120.00205 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00020 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47394 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.47162 * 120.00391 * 10 8 6 13 13 H 1.48503 * 109.47381 * 240.00236 * 10 8 6 14 14 C 1.38188 * 111.00151 * 58.54642 * 4 3 2 15 15 S 1.72006 * 127.35191 * 236.02302 * 14 4 3 16 16 N 1.69445 * 96.12156 * 180.02562 * 15 14 4 17 17 C 1.29511 * 108.06688 * 0.02562 * 16 15 14 18 18 Cl 1.73603 * 121.51197 * 180.02562 * 17 16 15 19 19 C 1.39017 * 127.34649 * 56.04873 * 14 4 3 20 20 C 1.43199 * 123.22741 * 359.95999 * 19 14 4 21 21 N 4.36481 * 145.02957 * 301.54886 * 2 1 3 22 22 H 1.08001 * 119.99279 * 0.02562 * 1 2 3 23 23 H 1.08001 * 120.00495 * 179.97438 * 1 2 3 24 24 H 1.08010 * 119.99292 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47137 * 4.50948 * 3 2 1 26 26 H 1.09001 * 109.47372 * 244.50747 * 3 2 1 27 27 H 1.08997 * 109.47280 * 48.22235 * 5 4 3 28 28 H 1.09000 * 109.47146 * 168.22164 * 5 4 3 29 29 H 0.96998 * 119.99899 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9880 1.3366 1.1413 5 6 2.2536 1.3418 2.4136 6 6 1.5948 2.6833 2.6078 7 1 1.7802 3.4826 1.9056 8 6 0.7553 2.8899 3.6818 9 7 0.5298 1.9166 4.5371 10 14 -0.0618 4.5524 3.9222 11 1 0.3518 5.4699 2.8303 12 1 -1.5374 4.3870 3.8967 13 1 0.3499 5.1218 5.2304 14 6 3.8777 0.2806 1.0874 15 16 4.1557 -0.9124 2.2949 16 7 5.3421 -1.7650 1.4368 17 6 5.5160 -1.1745 0.2973 18 17 6.6626 -1.7646 -0.8649 19 6 4.7393 -0.0439 0.0458 20 6 4.8215 0.7105 -1.1685 21 7 4.8868 1.3090 -2.1319 22 1 -0.5399 0.9354 -0.0004 23 1 -0.5401 -0.9353 -0.0004 24 1 1.8500 -0.9355 -0.0004 25 1 1.3581 2.1319 0.0808 26 1 2.6283 1.3985 -0.9276 27 1 1.4922 0.5621 2.3968 28 1 2.9467 1.1552 3.2339 29 1 -0.0605 2.0621 5.2928 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291975770.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = 74.745479 kcal Electronic energy + Delta-G solvation = -17325.971457 eV Core-core repulsion = 14402.082296 eV Total energy + Delta-G solvation = -2923.889161 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05144 -39.20843 -37.65424 -37.27703 -34.97132 -34.26402 -31.84171 -29.31222 -27.73881 -25.68585 -23.63791 -22.93127 -21.17408 -19.69618 -18.88031 -18.14343 -17.21992 -16.98994 -16.32098 -16.20899 -16.08008 -15.57485 -14.64325 -14.35766 -14.27419 -14.21205 -14.13531 -13.70940 -13.05810 -12.87647 -12.79192 -12.71976 -12.60615 -12.39302 -12.26204 -12.12999 -11.90046 -11.53790 -11.28559 -10.64638 -10.39023 -9.88803 -9.30493 -8.25545 -6.35397 -0.72906 -0.30890 0.00632 0.43113 1.19023 1.32548 1.42774 1.47215 1.56515 1.61889 2.21684 2.35565 2.68411 2.87921 3.10387 3.72603 3.80057 3.87893 4.07951 4.25963 4.67528 4.86223 4.87404 4.95289 5.01283 5.42049 5.54399 5.60671 5.76733 5.85806 6.11683 6.39097 6.74150 7.33993 8.84773 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.023858 B = 0.005418 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.304441 B = 5166.257809 C = 5508.128323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.212 4.212 3 C 0.094 3.906 4 N -0.433 5.433 5 C 0.188 3.812 6 C -0.532 4.532 7 H 0.064 0.936 8 C 0.024 3.976 9 N -0.915 5.915 10 Si 0.958 3.042 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.282 1.282 14 C 0.104 3.896 15 S 0.360 5.640 16 N -0.495 5.495 17 C 0.232 3.768 18 Cl 0.016 6.984 19 C -0.192 4.192 20 C 0.308 3.692 21 N -0.440 5.440 22 H 0.101 0.899 23 H 0.120 0.880 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 -6.868 -6.208 9.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.231 4.231 3 C -0.031 4.031 4 N -0.144 5.144 5 C 0.064 3.936 6 C -0.571 4.571 7 H 0.082 0.918 8 C -0.177 4.177 9 N -0.554 5.554 10 Si 0.784 3.216 11 H -0.193 1.193 12 H -0.203 1.203 13 H -0.207 1.207 14 C -0.134 4.134 15 S 0.508 5.492 16 N -0.318 5.318 17 C 0.027 3.973 18 Cl 0.044 6.956 19 C -0.216 4.216 20 C -0.008 4.008 21 N -0.118 5.118 22 H 0.119 0.881 23 H 0.138 0.862 24 H 0.129 0.871 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.073 -6.783 -5.834 9.830 hybrid contribution -0.425 0.980 -0.793 1.330 sum 3.648 -5.803 -6.627 9.534 Atomic orbital electron populations 1.24090 0.95387 1.03122 0.95475 1.23328 0.97416 0.97743 1.04628 1.21498 0.93652 0.97634 0.90290 1.58193 1.17707 1.29857 1.08595 1.20072 0.92514 0.98883 0.82114 1.21167 1.27613 0.97308 1.10976 0.91781 1.25591 0.96627 1.00221 0.95267 1.70006 1.37424 1.33479 1.14499 0.85488 0.78233 0.79778 0.78092 1.19289 1.20299 1.20736 1.25172 0.97061 0.92337 0.98866 1.84907 1.32792 1.10654 1.20888 1.76002 1.20732 1.26474 1.08546 1.21341 0.93527 0.91366 0.91075 1.98425 1.56088 1.87576 1.53516 1.15440 1.08502 1.03056 0.94631 1.24185 0.92904 0.92411 0.91303 1.81203 1.09279 1.09766 1.11551 0.88086 0.86226 0.87130 0.88168 0.90159 0.95262 0.95096 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 14.32 67.78 0.97 -2.93 15 2 C -0.21 -6.34 7.67 25.64 0.20 -6.14 15 3 C 0.09 3.18 5.44 85.55 0.47 3.64 15 4 N -0.43 -16.20 4.68 -708.14 -3.32 -19.52 15 5 C 0.19 8.17 3.93 85.56 0.34 8.50 15 6 C -0.53 -25.84 8.44 25.60 0.22 -25.63 15 7 H 0.06 3.13 7.69 -2.91 -0.02 3.11 15 8 C 0.02 1.19 5.46 84.65 0.46 1.65 15 9 N -0.92 -47.56 13.29 21.44 0.28 -47.28 15 10 Si 0.96 39.69 29.54 68.60 2.03 41.72 15 11 H -0.27 -10.93 7.11 99.48 0.71 -10.23 15 12 H -0.28 -11.23 7.11 99.48 0.71 -10.52 15 13 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 14 C 0.10 3.44 4.76 83.88 0.40 3.84 15 15 S 0.36 10.99 21.78 -56.49 -1.23 9.76 15 16 N -0.49 -14.68 12.00 -52.96 -0.64 -15.32 15 17 C 0.23 6.71 7.27 85.33 0.62 7.33 15 18 Cl 0.02 0.41 28.56 -2.72 -0.08 0.33 15 19 C -0.19 -5.97 5.67 -21.55 -0.12 -6.09 15 20 C 0.31 9.97 12.60 88.33 1.11 11.08 15 21 N -0.44 -15.07 18.44 19.00 0.35 -14.72 15 22 H 0.10 2.80 7.84 -2.91 -0.02 2.78 15 23 H 0.12 2.70 8.06 -2.91 -0.02 2.68 15 24 H 0.11 3.14 7.59 -2.91 -0.02 3.12 15 25 H 0.10 3.55 6.92 -2.39 -0.02 3.53 15 26 H 0.08 2.62 5.79 -2.39 -0.01 2.61 15 27 H 0.03 1.33 6.94 -2.39 -0.02 1.32 15 28 H 0.03 1.42 7.02 -2.39 -0.02 1.40 15 29 H 0.27 13.26 8.31 -92.71 -0.77 12.49 15 Total: -1.00 -51.65 291.33 3.26 -48.40 By element: Atomic # 1 Polarization: 0.17 SS G_CDS: 1.20 Total: 1.36 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 4.66 Total: -4.74 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -3.32 Total: -96.84 kcal Atomic # 14 Polarization: 39.69 SS G_CDS: 2.03 Total: 41.72 kcal Atomic # 16 Polarization: 10.99 SS G_CDS: -1.23 Total: 9.76 kcal Atomic # 17 Polarization: 0.41 SS G_CDS: -0.08 Total: 0.33 kcal Total: -51.65 3.26 -48.40 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291975770.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.144 kcal (2) G-P(sol) polarization free energy of solvation -51.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds