Wall clock time and date at job start Tue Mar 31 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99998 * 2 1 4 4 H 1.48507 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46707 * 299.99412 * 3 2 1 6 6 H 1.48500 * 109.47412 * 59.99751 * 3 2 1 7 7 C 1.38807 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00202 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99994 * 0.02562 * 7 2 1 10 10 C 1.47021 * 125.65269 * 0.04098 * 9 7 2 11 11 C 1.54314 * 107.27582 * 181.02301 * 10 9 7 12 12 C 1.55158 * 102.94364 * 22.19042 * 11 10 9 13 13 H 1.08997 * 111.03536 * 82.58434 * 12 11 10 14 14 S 1.81394 * 111.00736 * 206.42401 * 12 11 10 15 15 C 1.76202 * 103.00294 * 178.96911 * 14 12 11 16 16 C 1.39003 * 120.07653 * 264.68890 * 15 14 12 17 17 C 1.38064 * 119.94534 * 179.74416 * 16 15 14 18 18 C 1.38311 * 120.09308 * 0.23206 * 17 16 15 19 19 C 1.38396 * 120.14458 * 0.02562 * 18 17 16 20 20 Cl 1.73609 * 119.96992 * 179.97438 * 19 18 17 21 21 C 1.38216 * 120.05660 * 0.02562 * 19 18 17 22 22 C 1.47431 * 125.64675 * 179.97438 * 9 7 2 23 23 H 0.97007 * 119.99854 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.87916 * 300.44107 * 10 9 7 25 25 H 1.09009 * 109.87859 * 61.60094 * 10 9 7 26 26 H 1.09008 * 110.71862 * 263.83177 * 11 10 9 27 27 H 1.09000 * 110.72349 * 140.55499 * 11 10 9 28 28 H 1.07997 * 120.02436 * 0.02562 * 16 15 14 29 29 H 1.08005 * 119.95531 * 180.25682 * 17 16 15 30 30 H 1.08000 * 119.92604 * 180.02562 * 18 17 16 31 31 H 1.08003 * 120.04766 * 180.02562 * 21 19 18 32 32 H 1.09001 * 110.36645 * 37.06515 * 22 9 7 33 33 H 1.08998 * 110.36525 * 274.74581 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3254 -2.3880 0.0005 10 6 -0.1376 -2.5328 -0.0009 11 6 -0.4486 -4.0440 0.0260 12 6 0.8512 -4.6560 0.6121 13 1 0.8556 -4.5964 1.7004 14 16 1.0710 -6.3690 0.0573 15 6 2.5954 -6.8361 0.8076 16 6 3.7836 -6.7332 0.0936 17 6 4.9771 -7.0950 0.6859 18 6 4.9914 -7.5641 1.9870 19 6 3.8100 -7.6731 2.6995 20 17 3.8332 -8.2632 4.3321 21 6 2.6116 -7.3137 2.1122 22 6 1.9333 -3.7312 0.0005 23 1 -0.4850 0.8401 -0.0004 24 1 -0.5585 -2.0519 0.8822 25 1 -0.5536 -2.0846 -0.9033 26 1 -0.6309 -4.4182 -0.9815 27 1 -1.2993 -4.2513 0.6753 28 1 3.7736 -6.3663 -0.9221 29 1 5.9009 -7.0112 0.1327 30 1 5.9266 -7.8460 2.4478 31 1 1.6898 -7.3984 2.6685 32 1 2.8326 -3.7406 0.6164 33 1 2.1668 -4.0419 -1.0178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292117211.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:31 Heat of formation + Delta-G solvation = 28.569171 kcal Electronic energy + Delta-G solvation = -17189.431164 eV Core-core repulsion = 14367.079991 eV Total energy + Delta-G solvation = -2822.351173 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.11807 -39.03343 -37.46813 -34.57788 -32.19154 -31.76842 -31.36183 -29.49827 -26.59596 -24.04622 -23.73361 -22.16497 -21.94346 -19.18454 -18.70503 -17.48855 -16.92239 -16.62684 -16.45814 -16.01858 -15.52788 -14.80120 -14.68174 -14.44837 -14.29604 -13.96822 -13.84705 -13.09350 -12.89762 -12.78845 -12.72639 -12.62998 -12.37937 -12.09987 -12.00306 -11.92016 -11.71893 -11.65807 -11.20386 -10.74393 -9.99676 -9.76013 -8.95392 -8.79109 -7.87570 -5.24058 -0.23997 0.13097 0.70252 1.08456 1.45550 1.46638 1.54600 1.57688 2.48448 2.54477 3.31559 3.53171 3.78079 3.80906 3.89629 3.98754 4.12751 4.16350 4.29321 4.43208 4.57521 4.66087 4.72948 4.79195 4.91200 5.05109 5.13323 5.19576 5.26179 5.41464 5.59500 5.64439 5.70958 6.15582 7.06852 7.72418 8.37082 9.23095 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.020802 B = 0.004235 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.702059 B = 6609.836991 C = 7101.340256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.082 0.918 9 N -0.626 5.626 10 C 0.188 3.812 11 C -0.105 4.105 12 C -0.071 4.071 13 H 0.086 0.914 14 S -0.126 6.126 15 C -0.119 4.119 16 C -0.073 4.073 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.053 4.053 20 Cl -0.066 7.066 21 C -0.077 4.077 22 C 0.150 3.850 23 H 0.248 0.752 24 H 0.017 0.983 25 H 0.014 0.986 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.168 0.832 30 H 0.161 0.839 31 H 0.139 0.861 32 H 0.036 0.964 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.294 -17.952 3.451 20.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.100 0.900 9 N -0.353 5.353 10 C 0.062 3.938 11 C -0.144 4.144 12 C -0.200 4.200 13 H 0.104 0.896 14 S 0.109 5.891 15 C -0.231 4.231 16 C -0.094 4.094 17 C -0.129 4.129 18 C -0.105 4.105 19 C -0.081 4.081 20 Cl -0.037 7.037 21 C -0.098 4.098 22 C 0.023 3.977 23 H 0.057 0.943 24 H 0.035 0.965 25 H 0.033 0.967 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.161 0.839 29 H 0.186 0.814 30 H 0.179 0.821 31 H 0.157 0.843 32 H 0.054 0.946 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.532 -18.428 2.921 20.121 hybrid contribution 0.829 1.822 1.043 2.257 sum 8.361 -16.605 3.963 19.009 Atomic orbital electron populations 1.70175 1.06310 1.25365 1.58041 1.25650 0.96626 1.00994 1.02295 0.85005 0.78189 0.79303 0.76792 1.18973 1.21713 1.21859 1.19482 0.91010 0.83579 1.43365 0.89996 1.44794 1.02476 1.00925 1.87073 1.20933 0.83801 0.90753 0.98301 1.22605 0.95351 0.95049 1.01424 1.24499 1.00191 0.93292 1.02059 0.89604 1.85189 1.23877 1.12773 1.67267 1.21744 0.97933 1.06385 0.97044 1.21953 0.91384 0.95404 1.00626 1.21539 0.98941 0.97826 0.94566 1.21568 0.97521 0.97025 0.94423 1.21062 0.95404 1.04133 0.87501 1.98374 1.98891 1.86859 1.19618 1.21584 0.97839 0.96388 0.93975 1.21928 0.93949 0.84331 0.97460 0.94255 0.96517 0.96734 0.90348 0.89073 0.83861 0.81423 0.82150 0.84273 0.94618 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.15 10.31 21.65 0.22 -56.93 16 2 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 3 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.25 -13.84 10.28 84.03 0.86 -12.98 16 8 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.63 -32.51 3.39 -691.95 -2.35 -34.86 16 10 C 0.19 9.36 5.37 86.73 0.47 9.83 16 11 C -0.10 -3.88 6.43 31.78 0.20 -3.68 16 12 C -0.07 -2.50 3.53 31.99 0.11 -2.39 16 13 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 14 S -0.13 -3.63 21.15 -56.49 -1.19 -4.82 16 15 C -0.12 -3.08 5.57 22.62 0.13 -2.96 16 16 C -0.07 -1.63 9.79 22.41 0.22 -1.41 16 17 C -0.11 -1.88 10.04 22.25 0.22 -1.66 16 18 C -0.09 -1.52 9.83 22.32 0.22 -1.30 16 19 C -0.05 -1.12 6.32 22.30 0.14 -0.98 16 20 Cl -0.07 -1.31 28.95 -2.72 -0.08 -1.39 16 21 C -0.08 -1.85 9.57 22.43 0.21 -1.64 16 22 C 0.15 6.22 6.58 86.86 0.57 6.79 16 23 H 0.25 14.45 8.31 -92.70 -0.77 13.68 16 24 H 0.02 0.92 7.38 -2.39 -0.02 0.90 16 25 H 0.01 0.80 7.51 -2.38 -0.02 0.78 16 26 H 0.08 2.74 8.03 -2.38 -0.02 2.72 16 27 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 28 H 0.14 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.17 1.82 8.06 -2.91 -0.02 1.79 16 30 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.46 8.03 -2.39 -0.02 1.44 16 Total: -1.00 -64.56 307.22 3.56 -61.01 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.10 Total: 4.76 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 3.83 Total: -15.47 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -2.13 Total: -91.78 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.19 Total: -4.82 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.08 Total: -1.39 kcal Total: -64.56 3.56 -61.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292117211.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.577 kcal (2) G-P(sol) polarization free energy of solvation -64.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds