Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48503 * 109.46883 * 85.17289 * 3 2 1 5 5 H 1.48496 * 109.47332 * 205.17405 * 3 2 1 6 6 H 1.48498 * 109.47342 * 325.17723 * 3 2 1 7 7 C 1.38814 * 120.00351 * 180.27723 * 2 1 3 8 8 H 1.07995 * 120.00061 * 169.76042 * 7 2 1 9 9 N 1.36942 * 119.99468 * 349.76384 * 7 2 1 10 10 C 1.47417 * 125.65118 * 345.38136 * 9 7 2 11 11 C 1.54907 * 104.83616 * 204.09666 * 10 9 7 12 12 C 1.55165 * 101.57948 * 322.99128 * 11 10 9 13 13 H 1.08998 * 110.72383 * 277.14089 * 12 11 10 14 14 S 1.81403 * 110.71931 * 154.04028 * 12 11 10 15 15 C 1.76196 * 102.99712 * 175.00269 * 14 12 11 16 16 C 1.39004 * 120.07634 * 359.72896 * 15 14 12 17 17 C 1.38065 * 119.94405 * 179.72597 * 16 15 14 18 18 C 1.38306 * 120.09580 * 0.54928 * 17 16 15 19 19 C 1.38402 * 120.14598 * 359.72075 * 18 17 16 20 20 Cl 1.73594 * 119.97504 * 180.02562 * 19 18 17 21 21 C 1.38219 * 120.05087 * 0.02562 * 19 18 17 22 22 C 1.47024 * 125.64502 * 165.08050 * 9 7 2 23 23 H 0.96999 * 120.00674 * 359.97438 * 1 2 3 24 24 H 1.08995 * 110.37067 * 322.93814 * 10 9 7 25 25 H 1.09004 * 110.36431 * 85.14592 * 10 9 7 26 26 H 1.08999 * 111.00567 * 81.06151 * 11 10 9 27 27 H 1.08996 * 111.00532 * 204.92491 * 11 10 9 28 28 H 1.08000 * 120.02715 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.95277 * 180.25216 * 17 16 15 30 30 H 1.08004 * 119.92737 * 179.75259 * 18 17 16 31 31 H 1.08004 * 120.04636 * 180.02562 * 21 19 18 32 32 H 1.09003 * 109.88045 * 298.39592 * 22 9 7 33 33 H 1.09003 * 109.88311 * 59.55688 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3956 2.1053 1.3952 5 1 3.5949 1.4129 -0.5955 6 1 1.5023 2.6211 -0.7995 7 6 2.0103 -1.2021 -0.0058 8 1 3.0773 -1.2087 -0.1721 9 7 1.3419 -2.3796 0.1993 10 6 -0.0268 -2.5093 0.7314 11 6 -0.0822 -3.9323 1.3409 12 6 0.7799 -4.7369 0.3323 13 1 0.1860 -5.0332 -0.5323 14 16 1.5144 -6.1900 1.1321 15 6 2.3090 -7.0186 -0.2045 16 6 2.2438 -6.4909 -1.4888 17 6 2.8722 -7.1394 -2.5332 18 6 3.5569 -8.3193 -2.3053 19 6 3.6196 -8.8512 -1.0291 20 17 4.4808 -10.3320 -0.7480 21 6 2.9971 -8.2042 0.0218 22 6 1.8682 -3.7236 -0.0807 23 1 -0.4851 0.8400 0.0004 24 1 -0.2070 -1.7595 1.5016 25 1 -0.7570 -2.4101 -0.0718 26 1 0.3630 -3.9489 2.3356 27 1 -1.1055 -4.3070 1.3660 28 1 1.7053 -5.5722 -1.6689 29 1 2.8250 -6.7273 -3.5303 30 1 4.0442 -8.8265 -3.1250 31 1 3.0464 -8.6191 1.0177 32 1 2.0853 -3.8225 -1.1443 33 1 2.7731 -3.8961 0.5021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292117215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = 40.912175 kcal Electronic energy + Delta-G solvation = -17151.896088 eV Core-core repulsion = 14330.080148 eV Total energy + Delta-G solvation = -2821.815940 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.17652 -37.41317 -36.58125 -32.70718 -31.22683 -30.91726 -29.52743 -27.91093 -24.64893 -23.12701 -22.70063 -20.49364 -20.36474 -18.01118 -16.90855 -16.52981 -15.63566 -15.34817 -14.92345 -14.68151 -13.89588 -13.83360 -13.73694 -13.25589 -12.55492 -12.42076 -11.98630 -11.83968 -11.78963 -11.57370 -11.17365 -11.07019 -10.97887 -10.85259 -10.47424 -10.15218 -10.14188 -9.85957 -9.80053 -9.70776 -8.93337 -8.66427 -7.35244 -6.86239 -5.84433 -3.19051 0.98116 1.10353 1.54944 2.04743 2.51922 3.35837 3.41797 3.43376 3.45346 4.43731 4.68410 4.88552 4.98903 5.01155 5.15617 5.25686 5.38989 5.40516 5.59024 5.60198 5.63068 5.99966 6.08880 6.10192 6.22837 6.24978 6.33204 6.46984 6.58317 6.63075 7.30022 7.46313 7.68351 8.15407 9.09143 9.70561 10.38179 11.29140 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.003736 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.024461 B = 7491.881784 C = 7963.127402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.002 4.002 3 Si 0.912 3.088 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.290 1.290 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.178 3.822 11 C -0.121 4.121 12 C -0.085 4.085 13 H 0.095 0.905 14 S -0.102 6.102 15 C -0.065 4.065 16 C -0.128 4.128 17 C -0.086 4.086 18 C -0.124 4.124 19 C -0.018 4.018 20 Cl -0.074 7.074 21 C -0.099 4.099 22 C 0.143 3.857 23 H 0.255 0.745 24 H 0.067 0.933 25 H 0.036 0.964 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.139 0.861 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.026 0.974 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -16.977 -1.990 17.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.200 4.200 3 Si 0.742 3.258 4 H -0.214 1.214 5 H -0.204 1.204 6 H -0.217 1.217 7 C -0.363 4.363 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.052 3.948 11 C -0.161 4.161 12 C -0.214 4.214 13 H 0.114 0.886 14 S 0.146 5.854 15 C -0.178 4.178 16 C -0.152 4.152 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.046 4.046 20 Cl -0.045 7.045 21 C -0.124 4.124 22 C 0.016 3.984 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.153 0.847 32 H 0.044 0.956 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.419 -17.117 -0.726 17.470 hybrid contribution 0.593 1.021 -1.426 1.851 sum 4.012 -16.096 -2.152 16.728 Atomic orbital electron populations 1.69933 1.05064 1.25500 1.55641 1.24889 0.95614 0.97988 1.01490 0.86106 0.78796 0.83270 0.77624 1.21446 1.20446 1.21664 1.19011 0.91174 0.82530 1.43556 0.90615 1.44456 1.13953 0.99805 1.74289 1.21389 0.86965 0.89810 0.96686 1.22935 0.97694 0.97959 0.97516 1.24612 1.00668 0.94334 1.01827 0.88645 1.85409 1.62601 1.24666 1.12714 1.21821 1.00900 0.97615 0.97480 1.21605 1.00921 1.01005 0.91633 1.21053 0.96033 0.94173 0.99334 1.21018 1.01364 0.96956 0.95279 1.20738 0.99120 0.89791 0.94967 1.98362 1.75704 1.33811 1.96631 1.20575 0.98522 0.94507 0.98804 1.21716 0.93575 0.85683 0.97475 0.93533 0.91514 0.94613 0.91059 0.90967 0.84359 0.84747 0.84979 0.84652 0.95595 0.94521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.18 10.91 55.49 0.61 -25.58 16 2 C 0.00 -0.06 5.37 -17.43 -0.09 -0.16 16 3 Si 0.91 21.66 29.57 -169.99 -5.03 16.63 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.42 10.21 -15.06 -0.15 -6.58 16 8 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 9 N -0.60 -14.91 3.39 -170.07 -0.58 -15.48 16 10 C 0.18 4.10 5.37 -2.53 -0.01 4.09 16 11 C -0.12 -2.16 6.55 -24.58 -0.16 -2.32 16 12 C -0.09 -1.44 2.51 -24.89 -0.06 -1.51 16 13 H 0.10 1.53 7.28 -51.93 -0.38 1.15 16 14 S -0.10 -1.54 21.21 -107.50 -2.28 -3.82 16 15 C -0.06 -0.91 6.10 -39.04 -0.24 -1.15 16 16 C -0.13 -1.72 8.91 -39.36 -0.35 -2.08 16 17 C -0.09 -0.98 10.04 -39.62 -0.40 -1.38 16 18 C -0.12 -1.36 9.83 -39.50 -0.39 -1.74 16 19 C -0.02 -0.21 6.32 -39.53 -0.25 -0.46 16 20 Cl -0.07 -0.78 28.95 -51.86 -1.50 -2.28 16 21 C -0.10 -1.27 9.57 -39.33 -0.38 -1.64 16 22 C 0.14 2.91 6.09 -3.06 -0.02 2.89 16 23 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.07 1.70 7.29 -51.93 -0.38 1.32 16 25 H 0.04 0.89 7.96 -51.93 -0.41 0.47 16 26 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.14 1.96 4.32 -52.49 -0.23 1.73 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.03 0.53 6.72 -51.93 -0.35 0.18 16 33 H 0.04 0.77 7.78 -51.93 -0.40 0.37 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -28.70 300.08 -10.57 -39.26 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.81 Total: -1.23 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.50 Total: -12.02 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.03 Total: -41.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.28 Total: -3.82 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.70 -10.57 -39.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292117215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.175 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds