Wall clock time and date at job start Tue Mar 31 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99982 * 2 1 4 4 H 1.48503 * 109.46883 * 85.17289 * 3 2 1 5 5 H 1.48496 * 109.47332 * 205.17405 * 3 2 1 6 6 H 1.48498 * 109.47342 * 325.17723 * 3 2 1 7 7 C 1.38814 * 120.00351 * 180.27723 * 2 1 3 8 8 H 1.07995 * 120.00061 * 169.76042 * 7 2 1 9 9 N 1.36942 * 119.99468 * 349.76384 * 7 2 1 10 10 C 1.47417 * 125.65118 * 345.38136 * 9 7 2 11 11 C 1.54907 * 104.83616 * 204.09666 * 10 9 7 12 12 C 1.55165 * 101.57948 * 322.99128 * 11 10 9 13 13 H 1.08998 * 110.72383 * 277.14089 * 12 11 10 14 14 S 1.81403 * 110.71931 * 154.04028 * 12 11 10 15 15 C 1.76196 * 102.99712 * 175.00269 * 14 12 11 16 16 C 1.39004 * 120.07634 * 359.72896 * 15 14 12 17 17 C 1.38065 * 119.94405 * 179.72597 * 16 15 14 18 18 C 1.38306 * 120.09580 * 0.54928 * 17 16 15 19 19 C 1.38402 * 120.14598 * 359.72075 * 18 17 16 20 20 Cl 1.73594 * 119.97504 * 180.02562 * 19 18 17 21 21 C 1.38219 * 120.05087 * 0.02562 * 19 18 17 22 22 C 1.47024 * 125.64502 * 165.08050 * 9 7 2 23 23 H 0.96999 * 120.00674 * 359.97438 * 1 2 3 24 24 H 1.08995 * 110.37067 * 322.93814 * 10 9 7 25 25 H 1.09004 * 110.36431 * 85.14592 * 10 9 7 26 26 H 1.08999 * 111.00567 * 81.06151 * 11 10 9 27 27 H 1.08996 * 111.00532 * 204.92491 * 11 10 9 28 28 H 1.08000 * 120.02715 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.95277 * 180.25216 * 17 16 15 30 30 H 1.08004 * 119.92737 * 179.75259 * 18 17 16 31 31 H 1.08004 * 120.04636 * 180.02562 * 21 19 18 32 32 H 1.09003 * 109.88045 * 298.39592 * 22 9 7 33 33 H 1.09003 * 109.88311 * 59.55688 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3956 2.1053 1.3952 5 1 3.5949 1.4129 -0.5955 6 1 1.5023 2.6211 -0.7995 7 6 2.0103 -1.2021 -0.0058 8 1 3.0773 -1.2087 -0.1721 9 7 1.3419 -2.3796 0.1993 10 6 -0.0268 -2.5093 0.7314 11 6 -0.0822 -3.9323 1.3409 12 6 0.7799 -4.7369 0.3323 13 1 0.1860 -5.0332 -0.5323 14 16 1.5144 -6.1900 1.1321 15 6 2.3090 -7.0186 -0.2045 16 6 2.2438 -6.4909 -1.4888 17 6 2.8722 -7.1394 -2.5332 18 6 3.5569 -8.3193 -2.3053 19 6 3.6196 -8.8512 -1.0291 20 17 4.4808 -10.3320 -0.7480 21 6 2.9971 -8.2042 0.0218 22 6 1.8682 -3.7236 -0.0807 23 1 -0.4851 0.8400 0.0004 24 1 -0.2070 -1.7595 1.5016 25 1 -0.7570 -2.4101 -0.0718 26 1 0.3630 -3.9489 2.3356 27 1 -1.1055 -4.3070 1.3660 28 1 1.7053 -5.5722 -1.6689 29 1 2.8250 -6.7273 -3.5303 30 1 4.0442 -8.8265 -3.1250 31 1 3.0464 -8.6191 1.0177 32 1 2.0853 -3.8225 -1.1443 33 1 2.7731 -3.8961 0.5021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292117215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:35 Heat of formation + Delta-G solvation = 27.048827 kcal Electronic energy + Delta-G solvation = -17152.497248 eV Core-core repulsion = 14330.080148 eV Total energy + Delta-G solvation = -2822.417100 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12535 -39.10306 -37.46111 -34.64557 -32.17970 -31.95785 -31.36015 -29.52592 -26.61079 -24.11238 -23.68350 -22.22646 -21.95660 -19.23804 -18.62963 -17.75618 -16.96185 -16.56818 -16.45126 -16.07678 -15.46327 -14.95058 -14.70318 -14.55015 -14.29205 -14.00498 -13.62306 -13.01906 -12.97891 -12.76698 -12.73387 -12.62958 -12.41350 -12.17467 -12.02784 -11.91115 -11.78373 -11.69286 -11.12193 -10.78273 -10.68619 -9.87104 -8.90116 -8.46304 -7.92751 -5.29857 0.01702 0.16140 0.38833 1.10891 1.30687 1.46235 1.47890 1.56789 2.47618 2.50891 3.27798 3.50212 3.63572 3.78718 3.81935 3.98916 4.06618 4.14593 4.34281 4.45957 4.52101 4.62619 4.74363 4.81990 4.90033 5.03492 5.06282 5.17219 5.30871 5.36503 5.52598 5.64743 5.66362 6.15557 7.03453 7.69324 8.36685 9.19301 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.030526 B = 0.003736 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.024461 B = 7491.881784 C = 7963.127402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.055 4.055 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.292 1.292 7 C -0.250 4.250 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.182 3.818 11 C -0.105 4.105 12 C -0.076 4.076 13 H 0.106 0.894 14 S -0.091 6.091 15 C -0.083 4.083 16 C -0.141 4.141 17 C -0.085 4.085 18 C -0.116 4.116 19 C -0.023 4.023 20 Cl -0.062 7.062 21 C -0.104 4.104 22 C 0.145 3.855 23 H 0.251 0.749 24 H 0.033 0.967 25 H 0.012 0.988 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.142 0.858 32 H 0.028 0.972 33 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -18.666 -2.597 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.249 4.249 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.193 1.193 6 H -0.218 1.218 7 C -0.380 4.380 8 H 0.093 0.907 9 N -0.348 5.348 10 C 0.056 3.944 11 C -0.145 4.145 12 C -0.205 4.205 13 H 0.124 0.876 14 S 0.156 5.844 15 C -0.196 4.196 16 C -0.165 4.165 17 C -0.104 4.104 18 C -0.137 4.137 19 C -0.052 4.052 20 Cl -0.033 7.033 21 C -0.129 4.129 22 C 0.018 3.982 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.146 0.854 29 H 0.176 0.824 30 H 0.176 0.824 31 H 0.160 0.840 32 H 0.046 0.954 33 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.487 -18.841 -1.339 19.414 hybrid contribution 0.358 1.404 -1.290 1.940 sum 4.845 -17.437 -2.629 18.287 Atomic orbital electron populations 1.70107 1.06356 1.25832 1.56756 1.25677 0.96466 1.01074 1.01721 0.85104 0.77938 0.79134 0.77403 1.21304 1.19292 1.21837 1.19336 0.91539 0.83978 1.43097 0.90676 1.44743 1.14524 1.00876 1.74676 1.21179 0.85848 0.92257 0.95104 1.22747 0.99788 0.94696 0.97287 1.24366 0.99467 0.94623 1.02044 0.87565 1.85278 1.63167 1.23051 1.12856 1.21830 1.02138 0.98390 0.97260 1.21627 1.01667 1.01047 0.92156 1.21340 0.95132 0.94102 0.99876 1.21356 1.00273 0.96453 0.95666 1.20869 0.98960 0.90223 0.95125 1.98370 1.75325 1.32952 1.96630 1.20675 0.98408 0.94189 0.99580 1.21784 0.94374 0.84582 0.97472 0.94004 0.94848 0.97014 0.90844 0.88044 0.85449 0.82381 0.82354 0.84021 0.95377 0.95062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 10.91 21.65 0.24 -55.28 16 2 C -0.05 -3.08 5.37 84.86 0.46 -2.62 16 3 Si 0.98 45.08 29.57 68.60 2.03 47.11 16 4 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 7 C -0.25 -13.98 10.21 84.03 0.86 -13.12 16 8 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 9 N -0.62 -31.60 3.39 -691.98 -2.35 -33.95 16 10 C 0.18 8.66 5.37 86.86 0.47 9.13 16 11 C -0.11 -3.70 6.55 31.99 0.21 -3.49 16 12 C -0.08 -2.50 2.51 31.79 0.08 -2.42 16 13 H 0.11 3.28 7.28 -2.39 -0.02 3.27 16 14 S -0.09 -2.61 21.21 -56.49 -1.20 -3.81 16 15 C -0.08 -2.21 6.10 22.62 0.14 -2.07 16 16 C -0.14 -3.60 8.91 22.41 0.20 -3.40 16 17 C -0.08 -1.72 10.04 22.24 0.22 -1.49 16 18 C -0.12 -2.17 9.83 22.33 0.22 -1.95 16 19 C -0.02 -0.49 6.32 22.30 0.14 -0.35 16 20 Cl -0.06 -1.15 28.95 -2.72 -0.08 -1.23 16 21 C -0.10 -2.46 9.57 22.43 0.21 -2.24 16 22 C 0.14 5.89 6.09 86.73 0.53 6.42 16 23 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 24 H 0.03 1.77 7.29 -2.39 -0.02 1.75 16 25 H 0.01 0.61 7.96 -2.39 -0.02 0.59 16 26 H 0.07 2.56 8.04 -2.39 -0.02 2.54 16 27 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.13 3.49 4.32 -2.91 -0.01 3.48 16 29 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 32 H 0.03 1.14 6.72 -2.39 -0.02 1.13 16 33 H 0.03 1.31 7.78 -2.39 -0.02 1.29 16 Total: -1.00 -62.34 300.08 3.49 -58.85 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.12 Total: 5.93 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: 3.73 Total: -17.63 kcal Atomic # 7 Polarization: -87.11 SS G_CDS: -2.11 Total: -89.23 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -2.61 SS G_CDS: -1.20 Total: -3.81 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -62.34 3.49 -58.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292117215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.894 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds