Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47197 * 300.00203 * 3 2 1 6 6 H 1.48502 * 109.47099 * 59.99936 * 3 2 1 7 7 C 1.39041 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 159.85529 * 7 2 1 9 9 N 1.36882 * 119.99476 * 339.85766 * 7 2 1 10 10 C 1.34776 * 120.00102 * 134.23353 * 9 7 2 11 11 O 1.21602 * 120.00211 * 186.04249 * 10 9 7 12 12 C 1.47656 * 119.99570 * 6.03305 * 10 9 7 13 13 C 1.39675 * 120.15722 * 325.05973 * 12 10 9 14 14 C 1.38096 * 119.83479 * 179.97438 * 13 12 10 15 15 F 1.35102 * 119.93095 * 180.02562 * 14 13 12 16 16 C 1.38640 * 120.13842 * 359.97438 * 14 13 12 17 17 C 1.38256 * 120.30089 * 0.02562 * 16 14 13 18 18 C 1.38126 * 120.17075 * 0.27473 * 17 16 14 19 19 Cl 1.73600 * 120.07340 * 179.70462 * 18 17 16 20 20 C 1.46507 * 119.99994 * 314.22947 * 9 7 2 21 21 C 1.52994 * 117.49809 * 1.13189 * 20 9 7 22 22 C 1.52997 * 117.49704 * 292.46696 * 20 9 7 23 23 H 0.96997 * 120.00482 * 5.05195 * 1 2 3 24 24 H 1.08005 * 120.08067 * 0.02562 * 13 12 10 25 25 H 1.07998 * 119.84698 * 180.02562 * 16 14 13 26 26 H 1.08002 * 119.91292 * 179.97438 * 17 16 14 27 27 H 1.09001 * 115.54479 * 146.79661 * 20 9 7 28 28 H 1.09004 * 117.50326 * 359.97438 * 21 20 9 29 29 H 1.08998 * 117.49702 * 145.02413 * 21 20 9 30 30 H 1.09008 * 117.49691 * 214.97595 * 22 20 9 31 31 H 1.08998 * 117.49925 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 -0.0006 5 1 1.8888 2.3966 -1.2125 6 1 1.8888 2.3965 1.2125 7 6 2.0090 -1.2041 -0.0005 8 1 3.0394 -1.2325 -0.3226 9 7 1.3874 -2.3534 0.4072 10 6 1.5155 -3.4824 -0.3177 11 8 0.8770 -4.4730 -0.0182 12 6 2.4312 -3.5164 -1.4755 13 6 2.5973 -2.3812 -2.2722 14 6 3.4558 -2.4202 -3.3532 15 9 3.6184 -1.3232 -4.1248 16 6 4.1521 -3.5824 -3.6476 17 6 3.9920 -4.7093 -2.8628 18 6 3.1318 -4.6862 -1.7823 19 17 2.9269 -6.1050 -0.8031 20 6 0.5828 -2.3564 1.6316 21 6 0.4545 -1.0371 2.3957 22 6 1.3177 -2.1682 2.9602 23 1 -0.4851 0.8367 -0.0740 24 1 2.0563 -1.4750 -2.0429 25 1 4.8226 -3.6075 -4.4939 26 1 4.5372 -5.6114 -3.0981 27 1 -0.2819 -3.0199 1.6242 28 1 0.9690 -0.1670 1.9877 29 1 -0.4945 -0.8330 2.8915 30 1 0.9362 -2.7077 3.8272 31 1 2.3997 -2.0419 2.9234 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292532656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -9.376984 kcal Electronic energy + Delta-G solvation = -20236.894746 eV Core-core repulsion = 16846.684928 eV Total energy + Delta-G solvation = -3390.209818 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.52970 -39.51583 -37.86621 -36.07519 -35.85037 -33.33130 -31.79206 -30.49644 -29.75551 -25.35263 -23.86599 -22.40287 -21.35155 -20.88218 -19.47716 -17.89603 -16.72157 -16.18396 -16.09641 -15.52731 -15.24129 -15.09163 -14.49888 -13.96414 -13.69650 -13.23985 -13.08271 -12.88386 -12.55976 -12.14414 -12.01437 -11.73188 -11.35983 -11.07426 -10.93312 -10.78127 -10.50741 -10.44909 -10.35251 -9.81651 -9.38584 -8.85162 -8.69190 -8.49182 -8.17152 -7.41915 -6.54480 -4.27737 1.16861 1.45725 2.58582 2.99207 3.11875 3.14997 3.47442 3.90914 4.13380 4.38556 4.55812 4.70445 5.01863 5.15035 5.22399 5.56438 5.61195 5.95821 5.99453 6.09560 6.10587 6.20002 6.35074 6.45528 6.47194 6.67277 6.80482 6.99795 7.13121 7.24496 7.29153 7.85376 8.18117 8.85051 9.29445 9.75001 10.45624 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.008926 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.163792 B = 3136.323469 C = 4636.105700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.364 4.364 8 H 0.092 0.908 9 N -0.402 5.402 10 C 0.517 3.483 11 O -0.573 6.573 12 C -0.058 4.058 13 C -0.090 4.090 14 C 0.077 3.923 15 F -0.140 7.140 16 C -0.139 4.139 17 C -0.106 4.106 18 C -0.015 4.015 19 Cl -0.049 7.049 20 C 0.110 3.890 21 C -0.145 4.145 22 C -0.218 4.218 23 H 0.273 0.727 24 H 0.184 0.816 25 H 0.137 0.863 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.112 0.888 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.199 -2.796 -3.138 7.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.151 4.151 3 Si 0.723 3.277 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.492 4.492 8 H 0.109 0.891 9 N -0.119 5.119 10 C 0.306 3.694 11 O -0.457 6.457 12 C -0.062 4.062 13 C -0.109 4.109 14 C 0.058 3.942 15 F -0.119 7.119 16 C -0.159 4.159 17 C -0.124 4.124 18 C -0.043 4.043 19 Cl -0.020 7.020 20 C 0.005 3.995 21 C -0.183 4.183 22 C -0.256 4.256 23 H 0.084 0.916 24 H 0.201 0.799 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.124 0.876 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.657 -3.213 -2.836 7.097 hybrid contribution 0.468 1.103 -0.118 1.204 sum 6.125 -2.110 -2.954 7.120 Atomic orbital electron populations 1.70034 1.06109 1.28254 1.42228 1.25386 0.95127 0.99659 0.94914 0.86336 0.80694 0.82100 0.78592 1.18700 1.20112 1.19915 1.19382 0.96668 0.84948 1.48161 0.89096 1.42632 1.43205 1.07978 1.18059 1.17925 0.84210 0.84723 0.82567 1.90691 1.48458 1.35695 1.70901 1.19786 0.97495 0.91505 0.97442 1.22390 0.96556 1.00941 0.91056 1.17757 1.00552 0.83714 0.92176 1.91483 1.94553 1.52065 1.73778 1.21057 1.01574 0.91853 1.01389 1.20656 0.98859 0.98800 0.94134 1.21023 0.99142 0.89072 0.95035 1.98368 1.96444 1.37517 1.69679 1.21119 0.95831 1.00373 0.82196 1.23202 0.99707 0.94074 1.01300 1.23391 0.99159 1.05365 0.97727 0.91600 0.79926 0.84525 0.84389 0.87557 0.86974 0.90554 0.90235 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.34 11.33 55.50 0.63 -19.71 16 2 C 0.06 1.36 2.89 -17.45 -0.05 1.31 16 3 Si 0.90 18.14 29.18 -169.99 -4.96 13.18 16 4 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.36 -8.60 5.58 -15.00 -0.08 -8.69 16 8 H 0.09 2.13 6.56 -52.49 -0.34 1.78 16 9 N -0.40 -9.77 2.77 -108.86 -0.30 -10.07 16 10 C 0.52 12.55 7.12 -12.42 -0.09 12.46 16 11 O -0.57 -14.87 14.80 5.28 0.08 -14.79 16 12 C -0.06 -1.23 5.50 -104.94 -0.58 -1.81 16 13 C -0.09 -1.80 7.80 -39.10 -0.30 -2.10 16 14 C 0.08 1.33 7.29 -39.48 -0.29 1.04 16 15 F -0.14 -2.39 17.26 2.25 0.04 -2.35 16 16 C -0.14 -2.00 10.02 -39.43 -0.39 -2.40 16 17 C -0.11 -1.56 9.81 -39.62 -0.39 -1.95 16 18 C -0.01 -0.27 6.34 -39.05 -0.25 -0.52 16 19 Cl -0.05 -0.90 26.64 -51.86 -1.38 -2.28 16 20 C 0.11 2.54 5.61 -67.93 -0.38 2.16 16 21 C -0.15 -3.09 8.17 -26.69 -0.22 -3.31 16 22 C -0.22 -4.37 10.39 -26.69 -0.28 -4.65 16 23 H 0.27 6.31 8.31 -40.82 -0.34 5.97 16 24 H 0.18 3.98 5.50 -52.48 -0.29 3.69 16 25 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.11 2.54 7.78 -51.93 -0.40 2.14 16 28 H 0.11 2.55 4.51 -51.93 -0.23 2.32 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 31 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 283.04 15.07 4.27 4.27 Total: -1.00 -26.37 283.04 -7.45 -33.82 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -2.52 Total: 6.39 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.30 Total: -8.45 kcal Atomic # 7 Polarization: -30.11 SS G_CDS: 0.33 Total: -29.78 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.08 Total: -14.79 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -4.96 Total: 13.18 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.38 Total: -2.28 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.37 -7.45 -33.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292532656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.443 kcal (2) G-P(sol) polarization free energy of solvation -26.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds