Wall clock time and date at job start Tue Mar 31 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31367 * 1 3 3 Si 1.86803 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47286 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47197 * 300.00203 * 3 2 1 6 6 H 1.48502 * 109.47099 * 59.99936 * 3 2 1 7 7 C 1.39041 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00214 * 159.85529 * 7 2 1 9 9 N 1.36882 * 119.99476 * 339.85766 * 7 2 1 10 10 C 1.34776 * 120.00102 * 134.23353 * 9 7 2 11 11 O 1.21602 * 120.00211 * 186.04249 * 10 9 7 12 12 C 1.47656 * 119.99570 * 6.03305 * 10 9 7 13 13 C 1.39675 * 120.15722 * 325.05973 * 12 10 9 14 14 C 1.38096 * 119.83479 * 179.97438 * 13 12 10 15 15 F 1.35102 * 119.93095 * 180.02562 * 14 13 12 16 16 C 1.38640 * 120.13842 * 359.97438 * 14 13 12 17 17 C 1.38256 * 120.30089 * 0.02562 * 16 14 13 18 18 C 1.38126 * 120.17075 * 0.27473 * 17 16 14 19 19 Cl 1.73600 * 120.07340 * 179.70462 * 18 17 16 20 20 C 1.46507 * 119.99994 * 314.22947 * 9 7 2 21 21 C 1.52994 * 117.49809 * 1.13189 * 20 9 7 22 22 C 1.52997 * 117.49704 * 292.46696 * 20 9 7 23 23 H 0.96997 * 120.00482 * 5.05195 * 1 2 3 24 24 H 1.08005 * 120.08067 * 0.02562 * 13 12 10 25 25 H 1.07998 * 119.84698 * 180.02562 * 16 14 13 26 26 H 1.08002 * 119.91292 * 179.97438 * 17 16 14 27 27 H 1.09001 * 115.54479 * 146.79661 * 20 9 7 28 28 H 1.09004 * 117.50326 * 359.97438 * 21 20 9 29 29 H 1.08998 * 117.49702 * 145.02413 * 21 20 9 30 30 H 1.09008 * 117.49691 * 214.97595 * 22 20 9 31 31 H 1.08998 * 117.49925 * 0.02562 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 3.7076 1.3465 -0.0006 5 1 1.8888 2.3966 -1.2125 6 1 1.8888 2.3965 1.2125 7 6 2.0090 -1.2041 -0.0005 8 1 3.0394 -1.2325 -0.3226 9 7 1.3874 -2.3534 0.4072 10 6 1.5155 -3.4824 -0.3177 11 8 0.8770 -4.4730 -0.0182 12 6 2.4312 -3.5164 -1.4755 13 6 2.5973 -2.3812 -2.2722 14 6 3.4558 -2.4202 -3.3532 15 9 3.6184 -1.3232 -4.1248 16 6 4.1521 -3.5824 -3.6476 17 6 3.9920 -4.7093 -2.8628 18 6 3.1318 -4.6862 -1.7823 19 17 2.9269 -6.1050 -0.8031 20 6 0.5828 -2.3564 1.6316 21 6 0.4545 -1.0371 2.3957 22 6 1.3177 -2.1682 2.9602 23 1 -0.4851 0.8367 -0.0740 24 1 2.0563 -1.4750 -2.0429 25 1 4.8226 -3.6075 -4.4939 26 1 4.5372 -5.6114 -3.0981 27 1 -0.2819 -3.0199 1.6242 28 1 0.9690 -0.1670 1.9877 29 1 -0.4945 -0.8330 2.8915 30 1 0.9362 -2.7077 3.8272 31 1 2.3997 -2.0419 2.9234 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292532656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:21 Heat of formation + Delta-G solvation = -22.560748 kcal Electronic energy + Delta-G solvation = -20237.466437 eV Core-core repulsion = 16846.684928 eV Total energy + Delta-G solvation = -3390.781509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.88076 -41.15864 -39.40071 -37.84426 -37.27414 -35.07314 -33.57058 -31.96636 -31.14066 -27.16979 -25.39426 -23.81134 -23.00488 -22.50047 -21.24331 -19.51602 -18.37282 -17.64427 -17.48976 -17.08457 -16.84937 -16.57727 -16.17987 -15.68096 -15.16659 -14.85952 -14.61407 -14.32334 -14.07617 -13.84472 -13.42556 -13.40559 -13.05897 -12.69458 -12.48854 -12.19455 -12.10334 -12.06075 -11.86548 -11.53191 -11.12562 -10.63243 -10.33654 -10.04897 -9.57131 -9.22339 -8.33127 -6.11627 -0.23597 0.09626 1.18642 1.37174 1.45245 1.54919 1.91441 2.22536 2.54894 2.74110 2.91184 3.23882 3.39658 3.74964 3.92468 4.13020 4.20729 4.25418 4.35568 4.45377 4.58403 4.85149 4.91466 4.97414 5.05287 5.07777 5.23968 5.29961 5.43174 5.53222 5.76579 6.04996 6.36605 7.03850 7.47633 7.94366 8.68554 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.015246 B = 0.008926 C = 0.006038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.163792 B = 3136.323469 C = 4636.105700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.032 3.968 3 Si 0.955 3.045 4 H -0.260 1.260 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.411 5.411 10 C 0.502 3.498 11 O -0.605 6.605 12 C -0.090 4.090 13 C -0.106 4.106 14 C 0.075 3.925 15 F -0.139 7.139 16 C -0.110 4.110 17 C -0.087 4.087 18 C -0.025 4.025 19 Cl -0.054 7.054 20 C 0.076 3.924 21 C -0.138 4.138 22 C -0.190 4.190 23 H 0.275 0.725 24 H 0.156 0.844 25 H 0.185 0.815 26 H 0.181 0.819 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 -2.886 -4.165 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.175 4.175 3 Si 0.778 3.222 4 H -0.184 1.184 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.495 4.495 8 H 0.107 0.893 9 N -0.128 5.128 10 C 0.292 3.708 11 O -0.491 6.491 12 C -0.094 4.094 13 C -0.125 4.125 14 C 0.056 3.944 15 F -0.118 7.118 16 C -0.129 4.129 17 C -0.105 4.105 18 C -0.053 4.053 19 Cl -0.025 7.025 20 C -0.029 4.029 21 C -0.176 4.176 22 C -0.229 4.229 23 H 0.085 0.915 24 H 0.173 0.827 25 H 0.203 0.797 26 H 0.199 0.801 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.125 0.875 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.877 -3.291 -3.859 9.369 hybrid contribution -0.207 1.072 0.126 1.099 sum 7.670 -2.220 -3.732 8.814 Atomic orbital electron populations 1.70121 1.07384 1.28954 1.43486 1.25941 0.95542 1.01829 0.94171 0.85478 0.79633 0.78662 0.78460 1.18359 1.20150 1.19480 1.19456 0.96544 0.85055 1.48441 0.89293 1.42846 1.43142 1.08310 1.18478 1.18535 0.84540 0.84363 0.83344 1.90636 1.49847 1.36539 1.72105 1.19616 0.99020 0.93358 0.97362 1.22042 0.97925 0.99783 0.92750 1.17820 1.00326 0.84797 0.91470 1.91487 1.94482 1.52325 1.73510 1.21529 1.00012 0.89802 1.01585 1.21131 0.97071 1.00430 0.91913 1.21273 0.99794 0.88062 0.96136 1.98362 1.96558 1.37419 1.70179 1.21203 0.96534 1.01668 0.83522 1.23124 1.00466 0.93126 1.00854 1.23405 0.98824 1.03949 0.96709 0.91481 0.82686 0.79741 0.80138 0.89454 0.88271 0.89289 0.87459 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.28 11.33 21.68 0.25 -43.03 16 2 C 0.03 1.51 2.89 84.95 0.25 1.75 16 3 Si 0.95 37.30 29.18 68.60 2.00 39.30 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.28 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.37 -17.80 5.58 84.10 0.47 -17.33 16 8 H 0.09 4.26 6.56 -2.91 -0.02 4.24 16 9 N -0.41 -20.69 2.77 -616.57 -1.71 -22.40 16 10 C 0.50 25.27 7.12 86.73 0.62 25.89 16 11 O -0.60 -32.65 14.80 -4.04 -0.06 -32.71 16 12 C -0.09 -3.83 5.50 -20.07 -0.11 -3.94 16 13 C -0.11 -4.23 7.80 22.58 0.18 -4.05 16 14 C 0.08 2.43 7.29 22.33 0.16 2.59 16 15 F -0.14 -4.46 17.26 44.97 0.78 -3.68 16 16 C -0.11 -2.68 10.02 22.37 0.22 -2.45 16 17 C -0.09 -2.23 9.81 22.25 0.22 -2.01 16 18 C -0.02 -0.87 6.34 22.61 0.14 -0.73 16 19 Cl -0.05 -1.95 26.64 -2.72 -0.07 -2.03 16 20 C 0.08 3.61 5.61 44.99 0.25 3.86 16 21 C -0.14 -5.91 8.17 30.62 0.25 -5.66 16 22 C -0.19 -7.55 10.39 30.62 0.32 -7.24 16 23 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 24 H 0.16 7.04 5.50 -2.91 -0.02 7.02 16 25 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16 26 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.09 4.40 7.78 -2.39 -0.02 4.39 16 28 H 0.10 4.53 4.51 -2.38 -0.01 4.52 16 29 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 30 H 0.11 3.63 8.14 -2.38 -0.02 3.61 16 31 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 Total: -1.00 -59.27 283.04 5.33 -53.94 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.18 Total: 19.93 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 2.97 Total: -9.32 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -1.46 Total: -65.43 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.06 Total: -32.71 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.78 Total: -3.68 kcal Atomic # 14 Polarization: 37.30 SS G_CDS: 2.00 Total: 39.30 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.07 Total: -2.03 kcal Total: -59.27 5.33 -53.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292532656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.382 kcal (2) G-P(sol) polarization free energy of solvation -59.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds