Wall clock time and date at job start Tue Mar 31 2020 06:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 S 1.81399 * 109.47165 * 179.97438 * 12 9 7 14 14 C 1.81405 * 102.99706 * 179.97438 * 13 12 9 15 15 C 1.50705 * 109.46754 * 180.02562 * 14 13 12 16 16 C 1.38227 * 119.99742 * 269.72961 * 15 14 13 17 17 C 1.38246 * 120.00028 * 179.76716 * 16 15 14 18 18 C 1.38239 * 119.99438 * 0.48204 * 17 16 15 19 19 N 1.48021 * 119.99786 * 179.76890 * 18 17 16 20 20 O 1.21791 * 120.00021 * 180.02562 * 19 18 17 21 21 O 1.21805 * 119.99713 * 0.02562 * 19 18 17 22 22 C 1.38231 * 120.00351 * 359.79231 * 18 17 16 23 23 C 1.38238 * 120.00006 * 359.95243 * 22 18 17 24 24 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 25 25 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 26 26 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 27 27 H 1.08996 * 109.47407 * 59.99213 * 12 9 7 28 28 H 1.09000 * 109.47133 * 299.99843 * 14 13 12 29 29 H 1.08990 * 109.47435 * 60.00310 * 14 13 12 30 30 H 1.08002 * 120.00806 * 359.97438 * 16 15 14 31 31 H 1.07994 * 119.99975 * 180.25093 * 17 16 15 32 32 H 1.07999 * 120.00430 * 179.97438 * 22 18 17 33 33 H 1.07997 * 120.00140 * 180.02562 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 16 1.3382 -5.2331 -0.0021 14 6 2.6650 -6.4702 -0.0025 15 6 2.0634 -7.8519 -0.0037 16 6 1.7922 -8.4886 1.1929 17 6 1.2358 -9.7542 1.1919 18 6 0.9599 -10.3869 -0.0059 19 7 0.3690 -11.7440 -0.0070 20 8 0.1263 -12.3016 -1.0622 21 8 0.1254 -12.3030 1.0474 22 6 1.2363 -9.7524 -1.2025 23 6 1.7878 -8.4848 -1.2014 24 1 -0.4850 -0.8401 -0.0004 25 1 0.9223 -2.5282 -1.9998 26 1 2.8726 -3.6039 -0.8910 27 1 2.8713 -3.6047 0.8889 28 1 3.2812 -6.3418 -0.8924 29 1 3.2811 -6.3426 0.8875 30 1 2.0119 -7.9962 2.1287 31 1 1.0203 -10.2500 2.1267 32 1 1.0212 -10.2468 -2.1382 33 1 2.0034 -7.9889 -2.1363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296027669.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:36 Heat of formation + Delta-G solvation = -62.467319 kcal Electronic energy + Delta-G solvation = -18517.750205 eV Core-core repulsion = 15250.742229 eV Total energy + Delta-G solvation = -3267.007976 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.30720 -40.61363 -38.24595 -37.74017 -34.56927 -34.32206 -32.47712 -31.66604 -29.82144 -26.94516 -26.20600 -24.26072 -23.49072 -22.67612 -20.45252 -19.81496 -19.53024 -18.66846 -17.84599 -16.78029 -16.74870 -16.59745 -16.27259 -15.79278 -15.66490 -15.37344 -14.92873 -14.61256 -14.26878 -14.12090 -13.62075 -13.22506 -12.99192 -12.81134 -12.59999 -12.47195 -12.35996 -12.34577 -12.22591 -11.94494 -11.56211 -11.07405 -10.66035 -10.44014 -10.38073 -10.14944 -8.70050 -8.64740 -6.52457 -1.37050 -0.07203 0.03066 0.31445 0.81641 1.54226 1.60877 1.61174 1.80495 2.31130 2.55988 3.13508 3.26517 3.31251 3.46636 3.69159 3.87565 3.90946 4.08214 4.18668 4.19596 4.24964 4.44961 4.63931 4.70050 4.71496 4.78374 5.09473 5.11678 5.30054 5.40578 5.74023 6.07364 6.42412 6.49834 7.11266 7.44756 8.72330 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.052445 B = 0.002713 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.765691 B =10316.850166 C =10391.552843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.017 4.017 3 Si 1.117 2.883 4 H -0.289 1.289 5 H -0.269 1.269 6 H -0.266 1.266 7 C -0.655 4.655 8 H 0.059 0.941 9 C 0.227 3.773 10 H 0.021 0.979 11 O -0.585 6.585 12 C -0.080 4.080 13 S -0.276 6.276 14 C -0.056 4.056 15 C -0.014 4.014 16 C -0.100 4.100 17 C -0.053 4.053 18 C -0.063 4.063 19 N 0.031 4.969 20 O -0.180 6.180 21 O -0.181 6.181 22 C -0.053 4.053 23 C -0.099 4.099 24 H 0.268 0.732 25 H 0.365 0.635 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.169 0.831 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -17.363 -0.525 19.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.938 3.062 4 H -0.215 1.215 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.695 4.695 8 H 0.078 0.922 9 C 0.169 3.831 10 H 0.039 0.961 11 O -0.390 6.390 12 C -0.229 4.229 13 S -0.045 6.045 14 C -0.203 4.203 15 C -0.015 4.015 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.147 4.147 19 N 0.546 4.454 20 O -0.393 6.393 21 O -0.394 6.394 22 C -0.072 4.072 23 C -0.119 4.119 24 H 0.078 0.922 25 H 0.211 0.789 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.186 0.814 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.380 -15.300 -0.063 16.987 hybrid contribution 1.345 -1.812 -0.254 2.271 sum 8.725 -17.112 -0.317 19.211 Atomic orbital electron populations 1.70785 1.08211 1.31310 1.45229 1.27347 0.96413 1.06592 0.91573 0.82954 0.74091 0.71061 0.78105 1.21467 1.19372 1.19131 1.22750 0.94923 0.92960 1.58818 0.92239 1.19107 0.88035 0.91057 0.84945 0.96115 1.86478 1.39600 1.96435 1.16522 1.24048 1.00815 0.93054 1.04962 1.87532 1.16931 1.01914 1.98157 1.22474 0.98405 0.91088 1.08343 1.19869 0.94036 0.93581 0.94052 1.21374 0.97876 0.93127 0.99690 1.21233 0.94005 0.94712 0.97275 1.21370 1.10846 0.84072 0.98431 1.43929 0.98032 1.03376 1.00055 1.94518 1.56618 1.67459 1.20714 1.94521 1.56647 1.67370 1.20843 1.21236 0.94002 0.94681 0.97293 1.21374 0.97810 0.93068 0.99676 0.92198 0.78862 0.89637 0.89720 0.86709 0.86853 0.81384 0.81609 0.81583 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.48 13.53 21.45 0.29 -55.19 16 2 C -0.02 -0.91 5.40 84.66 0.46 -0.46 16 3 Si 1.12 47.11 29.90 68.60 2.05 49.16 16 4 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 7 C -0.66 -34.06 8.76 25.60 0.22 -33.84 16 8 H 0.06 2.94 7.74 -2.91 -0.02 2.91 16 9 C 0.23 10.83 2.48 29.85 0.07 10.90 16 10 H 0.02 1.14 8.01 -2.39 -0.02 1.12 16 11 O -0.58 -28.38 11.61 -148.98 -1.73 -30.11 16 12 C -0.08 -2.85 5.58 71.98 0.40 -2.45 16 13 S -0.28 -8.31 21.36 -56.49 -1.21 -9.52 16 14 C -0.06 -1.00 6.07 71.24 0.43 -0.57 16 15 C -0.01 -0.22 5.14 -19.86 -0.10 -0.32 16 16 C -0.10 -1.52 9.70 22.27 0.22 -1.30 16 17 C -0.05 -0.89 9.56 22.27 0.21 -0.67 16 18 C -0.06 -1.26 6.85 36.37 0.25 -1.01 16 19 N 0.03 0.77 4.45 -46.46 -0.21 0.57 16 20 O -0.18 -4.70 18.45 18.90 0.35 -4.35 16 21 O -0.18 -4.73 18.45 18.88 0.35 -4.38 16 22 C -0.05 -0.88 9.56 22.27 0.21 -0.67 16 23 C -0.10 -1.49 9.70 22.27 0.22 -1.27 16 24 H 0.27 16.73 6.47 -92.71 -0.60 16.13 16 25 H 0.37 15.56 9.04 -74.06 -0.67 14.89 16 26 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.11 1.67 8.08 -2.39 -0.02 1.65 16 29 H 0.11 1.67 8.08 -2.40 -0.02 1.65 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.17 2.30 7.61 -2.91 -0.02 2.28 16 32 H 0.17 2.29 7.61 -2.91 -0.02 2.27 16 33 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -67.53 312.92 3.13 -64.40 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.64 Total: 21.09 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 2.59 Total: -31.66 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: 0.08 Total: -54.63 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.03 Total: -38.84 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.05 Total: 49.16 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.21 Total: -9.52 kcal Total: -67.53 3.13 -64.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296027669.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.934 kcal (2) G-P(sol) polarization free energy of solvation -67.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds