Wall clock time and date at job start Tue Mar 31 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36901 * 120.00014 * 2 1 4 4 H 1.07996 * 119.99953 * 199.01334 * 3 2 1 5 5 C 1.39019 * 120.00015 * 19.01219 * 3 2 1 6 6 N 1.31390 * 119.99741 * 18.79391 * 5 3 2 7 7 Si 1.86802 * 120.00237 * 198.78960 * 5 3 2 8 8 H 1.48503 * 109.46769 * 60.00053 * 7 5 3 9 9 H 1.48502 * 109.46946 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46973 * 300.00278 * 7 5 3 11 11 C 1.34776 * 120.00259 * 179.97438 * 2 1 3 12 12 O 1.21622 * 120.00306 * 183.29762 * 11 2 1 13 13 C 1.47500 * 119.99936 * 3.29602 * 11 2 1 14 14 C 1.39810 * 120.08018 * 317.10684 * 13 11 2 15 15 C 1.38102 * 119.91886 * 180.22803 * 14 13 11 16 16 C 1.39561 * 119.99593 * 359.48026 * 15 14 13 17 17 C 1.38928 * 120.06441 * 0.54740 * 16 15 14 18 18 Cl 1.73598 * 119.90046 * 179.72369 * 17 16 15 19 19 C 1.37887 * 120.19887 * 359.70318 * 17 16 15 20 20 O 1.36391 * 108.58449 * 180.33009 * 16 15 14 21 21 C 1.44312 * 105.41882 * 342.30266 * 20 16 15 22 22 O 1.36546 * 131.41061 * 179.75275 * 15 14 13 23 23 H 1.09000 * 109.47320 * 272.18090 * 1 2 3 24 24 H 1.09002 * 109.47539 * 32.18502 * 1 2 3 25 25 H 1.09007 * 109.47213 * 152.18446 * 1 2 3 26 26 H 0.97006 * 119.99508 * 180.02562 * 6 5 3 27 27 H 1.07993 * 120.04198 * 359.96237 * 14 13 11 28 28 H 1.08005 * 120.00508 * 180.02562 * 19 17 16 29 29 H 1.08997 * 111.00093 * 269.00958 * 21 20 16 30 30 H 1.09001 * 110.41505 * 146.10015 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1852 1.2111 -0.3047 5 6 1.5112 2.3567 0.3922 6 7 0.4056 2.2971 1.0996 7 14 2.2256 4.0151 -0.0864 8 1 2.2876 4.1187 -1.5665 9 1 1.3631 5.0987 0.4495 10 1 3.5934 4.1460 0.4768 11 6 2.1389 -1.1672 0.0005 12 8 3.3536 -1.1680 0.0611 13 6 1.4032 -2.4435 -0.0724 14 6 0.2458 -2.6297 0.6894 15 6 -0.4377 -3.8279 0.6222 16 6 0.0211 -4.8470 -0.2136 17 6 1.1716 -4.6617 -0.9700 18 17 1.7425 -5.9349 -2.0029 19 6 1.8611 -3.4695 -0.9031 20 8 -0.8243 -5.9118 -0.1052 21 6 -1.5635 -5.6922 1.1146 22 8 -1.5688 -4.2591 1.2541 23 1 -0.3634 0.0391 1.0269 24 1 -0.3634 0.8697 -0.5474 25 1 -0.3634 -0.9090 -0.4796 26 1 -0.0399 3.1143 1.3729 27 1 -0.1109 -1.8392 1.3329 28 1 2.7550 -3.3287 -1.4928 29 1 -1.0632 -6.1577 1.9637 30 1 -2.5808 -6.0710 1.0161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299569210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:43 Heat of formation + Delta-G solvation = -55.437754 kcal Electronic energy + Delta-G solvation = -19776.739015 eV Core-core repulsion = 16372.159063 eV Total energy + Delta-G solvation = -3404.579952 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.15374 -39.16498 -37.27226 -36.39880 -35.99346 -34.83497 -31.96261 -30.30267 -30.00377 -26.46747 -26.01634 -24.97854 -23.08548 -22.80621 -20.00683 -18.04942 -17.70066 -17.22311 -17.07594 -16.45184 -15.71729 -14.98511 -14.63995 -14.41562 -14.18219 -14.12171 -13.73157 -13.24141 -13.19074 -12.94662 -12.36824 -11.96427 -11.81171 -11.68993 -11.44004 -11.12683 -10.98740 -10.94310 -10.63356 -10.47874 -10.26833 -9.15733 -8.70190 -8.51983 -8.05776 -7.87334 -6.51631 -3.97534 0.92850 1.16127 2.07120 2.66160 3.08055 3.18351 3.21961 3.31453 3.35958 3.99318 4.06771 4.51521 4.58011 4.67467 4.78461 4.99476 5.15199 5.22974 5.29916 5.43199 5.78631 5.97172 6.13985 6.21463 6.35519 6.46800 6.70107 7.00539 7.05466 7.41853 7.93828 8.30952 9.01167 9.22555 9.80044 10.51939 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004891 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.518354 B = 5722.970004 C = 6575.003959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.421 5.421 3 C -0.308 4.308 4 H 0.106 0.894 5 C 0.034 3.966 6 N -0.867 5.867 7 Si 0.929 3.071 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.471 3.529 12 O -0.582 6.582 13 C -0.065 4.065 14 C -0.075 4.075 15 C 0.038 3.962 16 C 0.035 3.965 17 C -0.021 4.021 18 Cl -0.059 7.059 19 C -0.064 4.064 20 O -0.301 6.301 21 C 0.212 3.788 22 O -0.303 6.303 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.272 0.728 27 H 0.153 0.847 28 H 0.153 0.847 29 H 0.085 0.915 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 -12.284 -1.440 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.137 5.137 3 C -0.435 4.435 4 H 0.123 0.877 5 C -0.171 4.171 6 N -0.504 5.504 7 Si 0.755 3.245 8 H -0.197 1.197 9 H -0.208 1.208 10 H -0.195 1.195 11 C 0.259 3.741 12 O -0.468 6.468 13 C -0.069 4.069 14 C -0.095 4.095 15 C -0.006 4.006 16 C -0.010 4.010 17 C -0.049 4.049 18 Cl -0.030 7.030 19 C -0.084 4.084 20 O -0.217 6.217 21 C 0.100 3.900 22 O -0.220 6.220 23 H 0.082 0.918 24 H 0.089 0.911 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.171 0.829 28 H 0.171 0.829 29 H 0.103 0.897 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -5.520 -12.282 -1.428 13.541 hybrid contribution -0.118 0.505 -0.041 0.521 sum -5.639 -11.776 -1.469 13.139 Atomic orbital electron populations 1.21858 0.80986 0.99699 1.01902 1.43555 1.05734 1.04734 1.59685 1.19711 0.98252 0.82749 1.42837 0.87658 1.25388 0.96490 1.00290 0.94956 1.70019 1.18845 1.29728 1.31822 0.85950 0.79064 0.80269 0.79235 1.19663 1.20806 1.19513 1.17477 0.87283 0.82413 0.86900 1.90654 1.12967 1.86270 1.56953 1.20009 0.94175 0.96444 0.96254 1.20660 0.93194 0.95084 1.00516 1.19444 0.88469 0.95599 0.97103 1.19425 0.93016 0.88162 1.00438 1.19596 0.93729 0.92264 0.99300 1.98359 1.88425 1.50315 1.65948 1.20902 0.99751 0.89227 0.98511 1.87427 1.49930 1.42030 1.42289 1.25683 0.98693 0.79584 0.86024 1.87403 1.38620 1.21778 1.74167 0.91802 0.91124 0.94366 0.91738 0.82942 0.82891 0.89746 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.13 7.22 59.84 0.43 2.56 16 2 N -0.42 -10.47 3.02 -123.40 -0.37 -10.84 16 3 C -0.31 -8.25 9.29 -15.00 -0.14 -8.38 16 4 H 0.11 2.94 7.41 -52.49 -0.39 2.55 16 5 C 0.03 0.86 4.96 -17.45 -0.09 0.77 16 6 N -0.87 -21.97 10.84 55.50 0.60 -21.37 16 7 Si 0.93 19.75 29.59 -169.99 -5.03 14.72 16 8 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 9 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 11 C 0.47 11.36 7.24 -12.49 -0.09 11.26 16 12 O -0.58 -15.96 16.64 5.26 0.09 -15.87 16 13 C -0.06 -1.26 5.09 -104.98 -0.53 -1.79 16 14 C -0.07 -1.32 7.52 -39.04 -0.29 -1.61 16 15 C 0.04 0.61 7.13 -39.14 -0.28 0.33 16 16 C 0.04 0.55 6.94 -38.83 -0.27 0.28 16 17 C -0.02 -0.34 6.32 -39.45 -0.25 -0.59 16 18 Cl -0.06 -0.83 28.95 -51.86 -1.50 -2.33 16 19 C -0.06 -1.11 9.43 -39.15 -0.37 -1.48 16 20 O -0.30 -4.13 11.42 -45.33 -0.52 -4.65 16 21 C 0.21 2.21 8.89 101.05 0.90 3.10 16 22 O -0.30 -4.29 11.41 -45.84 -0.52 -4.81 16 23 H 0.06 1.39 6.76 -51.93 -0.35 1.04 16 24 H 0.07 1.58 7.03 -51.93 -0.36 1.22 16 25 H 0.04 0.71 5.56 -51.92 -0.29 0.43 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.15 2.69 5.92 -52.49 -0.31 2.37 16 28 H 0.15 2.58 8.06 -52.48 -0.42 2.16 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 278.55 15.07 4.20 4.20 Total: -1.00 -29.81 278.55 -6.15 -35.96 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -2.11 Total: 0.54 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -0.98 Total: 4.47 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.23 Total: -32.21 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.95 Total: -25.33 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.72 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.81 -6.15 -35.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299569210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.481 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds