Wall clock time and date at job start Tue Mar 31 2020 05:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36901 * 120.00014 * 2 1 4 4 H 1.07996 * 119.99953 * 199.01334 * 3 2 1 5 5 C 1.39019 * 120.00015 * 19.01219 * 3 2 1 6 6 N 1.31390 * 119.99741 * 18.79391 * 5 3 2 7 7 Si 1.86802 * 120.00237 * 198.78960 * 5 3 2 8 8 H 1.48503 * 109.46769 * 60.00053 * 7 5 3 9 9 H 1.48502 * 109.46946 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46973 * 300.00278 * 7 5 3 11 11 C 1.34776 * 120.00259 * 179.97438 * 2 1 3 12 12 O 1.21622 * 120.00306 * 183.29762 * 11 2 1 13 13 C 1.47500 * 119.99936 * 3.29602 * 11 2 1 14 14 C 1.39810 * 120.08018 * 317.10684 * 13 11 2 15 15 C 1.38102 * 119.91886 * 180.22803 * 14 13 11 16 16 C 1.39561 * 119.99593 * 359.48026 * 15 14 13 17 17 C 1.38928 * 120.06441 * 0.54740 * 16 15 14 18 18 Cl 1.73598 * 119.90046 * 179.72369 * 17 16 15 19 19 C 1.37887 * 120.19887 * 359.70318 * 17 16 15 20 20 O 1.36391 * 108.58449 * 180.33009 * 16 15 14 21 21 C 1.44312 * 105.41882 * 342.30266 * 20 16 15 22 22 O 1.36546 * 131.41061 * 179.75275 * 15 14 13 23 23 H 1.09000 * 109.47320 * 272.18090 * 1 2 3 24 24 H 1.09002 * 109.47539 * 32.18502 * 1 2 3 25 25 H 1.09007 * 109.47213 * 152.18446 * 1 2 3 26 26 H 0.97006 * 119.99508 * 180.02562 * 6 5 3 27 27 H 1.07993 * 120.04198 * 359.96237 * 14 13 11 28 28 H 1.08005 * 120.00508 * 180.02562 * 19 17 16 29 29 H 1.08997 * 111.00093 * 269.00958 * 21 20 16 30 30 H 1.09001 * 110.41505 * 146.10015 * 21 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1495 1.1856 0.0000 4 1 3.1852 1.2111 -0.3047 5 6 1.5112 2.3567 0.3922 6 7 0.4056 2.2971 1.0996 7 14 2.2256 4.0151 -0.0864 8 1 2.2876 4.1187 -1.5665 9 1 1.3631 5.0987 0.4495 10 1 3.5934 4.1460 0.4768 11 6 2.1389 -1.1672 0.0005 12 8 3.3536 -1.1680 0.0611 13 6 1.4032 -2.4435 -0.0724 14 6 0.2458 -2.6297 0.6894 15 6 -0.4377 -3.8279 0.6222 16 6 0.0211 -4.8470 -0.2136 17 6 1.1716 -4.6617 -0.9700 18 17 1.7425 -5.9349 -2.0029 19 6 1.8611 -3.4695 -0.9031 20 8 -0.8243 -5.9118 -0.1052 21 6 -1.5635 -5.6922 1.1146 22 8 -1.5688 -4.2591 1.2541 23 1 -0.3634 0.0391 1.0269 24 1 -0.3634 0.8697 -0.5474 25 1 -0.3634 -0.9090 -0.4796 26 1 -0.0399 3.1143 1.3729 27 1 -0.1109 -1.8392 1.3329 28 1 2.7550 -3.3287 -1.4928 29 1 -1.0632 -6.1577 1.9637 30 1 -2.5808 -6.0710 1.0161 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299569210.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:42 Heat of formation + Delta-G solvation = -74.413954 kcal Electronic energy + Delta-G solvation = -19777.561885 eV Core-core repulsion = 16372.159063 eV Total energy + Delta-G solvation = -3405.402822 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.30313 -40.85588 -38.67341 -37.62387 -37.18527 -36.77002 -33.84222 -31.72598 -31.32025 -28.27262 -27.19676 -26.55063 -24.58145 -24.10598 -21.60890 -19.31453 -19.14666 -18.77722 -18.47447 -17.85270 -17.24646 -16.53123 -16.14834 -15.92055 -15.79452 -15.31987 -15.27458 -14.76497 -14.43590 -14.08608 -13.98930 -13.67612 -13.43406 -13.23484 -12.86537 -12.72337 -12.47403 -12.44987 -12.15321 -12.12674 -11.73753 -11.05466 -10.60030 -9.87255 -9.81097 -9.29811 -8.43205 -6.00178 -0.43404 -0.15541 0.83100 1.38308 1.44115 1.52764 1.54745 1.78776 2.24540 2.28663 2.43323 2.90909 3.08464 3.29336 3.68628 3.77320 3.83257 3.93764 4.09858 4.23590 4.48488 4.52713 4.65781 4.80613 4.92901 4.98670 5.07384 5.26013 5.41894 5.83930 5.99686 6.37999 7.06497 7.32347 7.89502 8.59481 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.026198 B = 0.004891 C = 0.004258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.518354 B = 5722.970004 C = 6575.003959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.436 5.436 3 C -0.350 4.350 4 H 0.080 0.920 5 C 0.005 3.995 6 N -0.882 5.882 7 Si 0.992 3.008 8 H -0.266 1.266 9 H -0.269 1.269 10 H -0.274 1.274 11 C 0.468 3.532 12 O -0.626 6.626 13 C -0.085 4.085 14 C -0.074 4.074 15 C 0.044 3.956 16 C 0.052 3.948 17 C -0.023 4.023 18 Cl -0.039 7.039 19 C -0.059 4.059 20 O -0.304 6.304 21 C 0.202 3.798 22 O -0.311 6.311 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.279 0.721 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.112 0.888 30 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.430 -13.736 -1.469 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.152 5.152 3 C -0.478 4.478 4 H 0.098 0.902 5 C -0.199 4.199 6 N -0.519 5.519 7 Si 0.815 3.185 8 H -0.191 1.191 9 H -0.193 1.193 10 H -0.199 1.199 11 C 0.258 3.742 12 O -0.515 6.515 13 C -0.089 4.089 14 C -0.094 4.094 15 C -0.001 4.001 16 C 0.005 3.995 17 C -0.051 4.051 18 Cl -0.010 7.010 19 C -0.079 4.079 20 O -0.219 6.219 21 C 0.092 3.908 22 O -0.227 6.227 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.129 0.871 30 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.223 -13.760 -1.448 15.608 hybrid contribution 0.300 0.714 0.008 0.775 sum -6.923 -13.046 -1.441 14.839 Atomic orbital electron populations 1.21776 0.79261 1.00380 1.01570 1.43756 1.06888 1.04592 1.59935 1.19676 0.98058 0.84507 1.45539 0.90167 1.26129 0.96776 1.02892 0.94121 1.70068 1.19377 1.30860 1.31616 0.85021 0.78198 0.76273 0.79045 1.19112 1.19320 1.19913 1.18134 0.87074 0.83733 0.85267 1.90598 1.15067 1.87353 1.58520 1.19507 0.95503 0.94925 0.99008 1.20435 0.92813 0.95921 1.00230 1.19291 0.88813 0.94923 0.97037 1.19492 0.92485 0.88508 0.98974 1.19495 0.93769 0.92216 0.99622 1.98367 1.88261 1.49086 1.65272 1.20834 0.99731 0.89323 0.98052 1.87439 1.49435 1.41172 1.43893 1.26387 1.01103 0.77707 0.85615 1.87409 1.37417 1.24012 1.73858 0.92389 0.92408 0.91688 0.91130 0.83433 0.83018 0.87075 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.94 7.22 127.77 0.92 5.87 16 2 N -0.44 -22.49 3.02 -662.57 -2.00 -24.49 16 3 C -0.35 -19.54 9.29 84.09 0.78 -18.76 16 4 H 0.08 4.76 7.41 -2.91 -0.02 4.73 16 5 C 0.00 0.25 4.96 84.95 0.42 0.67 16 6 N -0.88 -45.06 10.84 21.68 0.23 -44.83 16 7 Si 0.99 40.83 29.59 68.60 2.03 42.86 16 8 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 9 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 C 0.47 23.47 7.24 86.69 0.63 24.10 16 12 O -0.63 -36.05 16.64 -4.10 -0.07 -36.12 16 13 C -0.09 -3.37 5.09 -20.09 -0.10 -3.47 16 14 C -0.07 -2.57 7.52 22.62 0.17 -2.40 16 15 C 0.04 1.32 7.13 22.56 0.16 1.49 16 16 C 0.05 1.48 6.94 22.75 0.16 1.64 16 17 C -0.02 -0.70 6.32 22.35 0.14 -0.56 16 18 Cl -0.04 -1.01 28.95 -2.72 -0.08 -1.09 16 19 C -0.06 -2.05 9.43 22.55 0.21 -1.84 16 20 O -0.30 -7.19 11.42 -74.78 -0.85 -8.04 16 21 C 0.20 3.31 8.89 113.37 1.01 4.32 16 22 O -0.31 -7.78 11.41 -76.59 -0.87 -8.66 16 23 H 0.06 2.58 6.76 -2.39 -0.02 2.56 16 24 H 0.06 2.64 7.03 -2.39 -0.02 2.62 16 25 H 0.06 2.44 5.56 -2.38 -0.01 2.43 16 26 H 0.28 13.24 8.31 -92.70 -0.77 12.47 16 27 H 0.15 5.21 5.92 -2.91 -0.02 5.19 16 28 H 0.15 5.19 8.06 -2.91 -0.02 5.17 16 29 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.17 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -65.86 278.55 4.10 -61.77 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 1.20 Total: 7.54 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 4.50 Total: 11.06 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.76 Total: -69.32 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -1.80 Total: -52.82 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -65.86 4.10 -61.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299569210.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.648 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds