Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47052 * 289.52022 * 3 2 1 5 5 C 1.36925 * 119.99840 * 95.81093 * 4 3 2 6 6 H 1.08000 * 120.00444 * 161.84923 * 5 4 3 7 7 C 1.39015 * 119.99707 * 341.84535 * 5 4 3 8 8 N 1.31388 * 120.00401 * 337.43138 * 7 5 4 9 9 Si 1.86804 * 119.99701 * 157.43207 * 7 5 4 10 10 H 1.48498 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47041 * 119.99926 * 9 7 5 12 12 H 1.48499 * 109.47114 * 239.99863 * 9 7 5 13 13 C 1.34776 * 120.00020 * 275.53117 * 4 3 2 14 14 O 1.21640 * 119.99751 * 180.27691 * 13 4 3 15 15 C 1.47325 * 120.00146 * 0.27498 * 13 4 3 16 16 C 1.40038 * 120.16585 * 89.72092 * 15 13 4 17 17 F 1.35104 * 120.08439 * 0.02733 * 16 15 13 18 18 C 1.38077 * 119.82902 * 179.72357 * 16 15 13 19 19 C 1.38620 * 120.16389 * 0.57719 * 18 16 15 20 20 F 1.35107 * 119.82330 * 179.71663 * 19 18 16 21 21 C 1.38609 * 120.34208 * 359.70122 * 19 18 16 22 22 C 1.38076 * 120.17313 * 359.97438 * 21 19 18 23 23 F 1.35096 * 120.08827 * 180.02562 * 22 21 19 24 24 H 4.40635 * 5.51478 * 179.97438 * 4 1 2 25 25 H 1.09000 * 109.46743 * 169.52403 * 3 2 1 26 26 H 1.08995 * 109.47366 * 49.52486 * 3 2 1 27 27 H 0.96996 * 119.99967 * 179.97438 * 8 7 5 28 28 H 1.08001 * 119.91681 * 180.27740 * 18 16 15 29 29 H 1.08000 * 119.91277 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.4606 1.3019 5 6 3.4765 -1.7747 1.4783 6 1 4.0987 -2.0635 2.3125 7 6 3.0227 -2.7371 0.5836 8 7 1.9509 -2.5074 -0.1407 9 14 3.9369 -4.3570 0.4113 10 1 5.1020 -4.3682 1.3320 11 1 3.0256 -5.4785 0.7535 12 1 4.4094 -4.5124 -0.9879 13 6 3.2527 0.4096 2.3242 14 8 3.6631 0.0275 3.4037 15 6 2.8848 1.8235 2.1344 16 6 1.5736 2.2487 2.3811 17 9 0.6410 1.3631 2.7949 18 6 1.2379 3.5766 2.2064 19 6 2.1920 4.4856 1.7765 20 9 1.8546 5.7822 1.6023 21 6 3.4905 4.0712 1.5246 22 6 3.8433 2.7479 1.7011 23 9 5.1095 2.3460 1.4556 24 1 -1.0499 0.0001 0.0002 25 1 3.0088 1.0114 -0.1869 26 1 3.0097 -0.6662 -0.7817 27 1 1.6345 -3.1788 -0.7652 28 1 0.2281 3.9069 2.4006 29 1 4.2285 4.7853 1.1903 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302304146.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = -83.290665 kcal Electronic energy + Delta-G solvation = -22209.916610 eV Core-core repulsion = 18264.704975 eV Total energy + Delta-G solvation = -3945.211636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.25584 -50.20110 -50.16940 -40.90600 -39.12270 -37.19891 -34.15049 -33.14955 -31.90228 -31.79049 -28.39061 -26.99174 -24.75671 -24.31731 -21.64697 -19.82601 -19.75710 -19.06424 -18.78574 -18.23501 -17.44443 -17.13892 -17.08815 -16.96894 -16.52435 -16.46048 -16.15116 -15.98162 -15.68754 -15.41811 -15.00863 -14.29851 -14.13356 -13.77743 -13.56804 -13.41208 -13.02152 -12.91497 -12.74288 -12.54930 -12.16133 -11.29539 -11.20112 -10.80001 -10.62504 -10.10919 -10.00541 -9.93717 -8.43018 -6.04269 -0.52061 -0.33554 1.26783 1.41156 1.54789 1.64822 1.89735 2.05159 2.28145 2.32562 2.34924 2.87661 2.93334 2.99748 3.04212 3.57715 3.64402 3.71907 3.85304 4.42788 4.46863 4.48424 4.56960 4.58887 4.77237 4.80569 5.35511 5.39047 5.46553 5.90118 6.29035 6.97697 7.10615 7.22186 7.76626 8.55746 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.006395 C = 0.005795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.754695 B = 4377.281014 C = 4830.407336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.160 4.160 3 C 0.235 3.765 4 N -0.424 5.424 5 C -0.362 4.362 6 H 0.078 0.922 7 C 0.011 3.989 8 N -0.859 5.859 9 Si 0.989 3.011 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.260 1.260 13 C 0.472 3.528 14 O -0.622 6.622 15 C -0.201 4.201 16 C 0.175 3.825 17 F -0.127 7.127 18 C -0.183 4.183 19 C 0.181 3.819 20 F -0.109 7.109 21 C -0.178 4.178 22 C 0.169 3.831 23 F -0.124 7.124 24 H 0.234 0.766 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.277 0.723 28 H 0.189 0.811 29 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.092 13.693 -3.506 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.162 4.162 3 C 0.113 3.887 4 N -0.138 5.138 5 C -0.489 4.489 6 H 0.096 0.904 7 C -0.195 4.195 8 N -0.494 5.494 9 Si 0.811 3.189 10 H -0.198 1.198 11 H -0.202 1.202 12 H -0.185 1.185 13 C 0.261 3.739 14 O -0.511 6.511 15 C -0.206 4.206 16 C 0.154 3.846 17 F -0.105 7.105 18 C -0.202 4.202 19 C 0.161 3.839 20 F -0.087 7.087 21 C -0.197 4.197 22 C 0.149 3.851 23 F -0.102 7.102 24 H 0.251 0.749 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.206 0.794 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -1.992 13.373 -3.181 13.889 hybrid contribution 0.137 -1.364 0.145 1.379 sum -1.854 12.008 -3.035 12.524 Atomic orbital electron populations 1.25060 0.96151 1.03819 0.99423 1.23098 0.94561 0.97626 1.00893 1.18229 0.85399 0.98561 0.86480 1.43833 1.53424 1.08075 1.08507 1.19654 1.31632 0.82894 1.14691 0.90404 1.26082 0.95158 1.02375 0.95880 1.70178 1.18164 1.36948 1.24134 0.84971 0.78270 0.76788 0.78823 1.19839 1.20227 1.18461 1.17988 0.85718 0.86010 0.84223 1.90601 1.53404 1.79934 1.27117 1.20178 0.95024 0.95558 1.09859 1.17090 0.83678 0.87416 0.96377 1.91565 1.63572 1.68411 1.86982 1.21143 1.03610 0.89449 1.05996 1.16686 0.91573 0.78739 0.96881 1.91604 1.92580 1.32187 1.92317 1.21149 0.97869 0.94126 1.06584 1.17045 0.78577 0.91882 0.97632 1.91558 1.36054 1.91398 1.91238 0.74934 0.89980 0.88460 0.91231 0.79363 0.78742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -8.93 19.25 74.32 1.43 -7.50 15 2 C -0.16 -7.10 10.76 31.13 0.33 -6.77 15 3 C 0.24 10.74 4.91 84.57 0.42 11.16 15 4 N -0.42 -22.58 2.59 -649.24 -1.68 -24.27 15 5 C -0.36 -20.77 9.30 84.08 0.78 -19.99 15 6 H 0.08 4.83 7.40 -2.91 -0.02 4.81 15 7 C 0.01 0.56 4.83 84.95 0.41 0.97 15 8 N -0.86 -44.23 9.57 21.68 0.21 -44.02 15 9 Si 0.99 41.55 29.61 68.60 2.03 43.58 15 10 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 11 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 12 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 13 C 0.47 24.94 6.29 86.63 0.54 25.49 15 14 O -0.62 -38.23 16.76 -4.16 -0.07 -38.30 15 15 C -0.20 -8.13 3.90 -20.01 -0.08 -8.21 15 16 C 0.17 6.13 6.77 22.67 0.15 6.29 15 17 F -0.13 -5.13 16.76 44.97 0.75 -4.38 15 18 C -0.18 -4.42 9.99 22.32 0.22 -4.19 15 19 C 0.18 3.81 7.30 22.45 0.16 3.98 15 20 F -0.11 -1.96 17.26 44.97 0.78 -1.18 15 21 C -0.18 -3.98 9.98 22.32 0.22 -3.76 15 22 C 0.17 5.53 6.85 22.67 0.16 5.68 15 23 F -0.12 -4.42 16.83 44.97 0.76 -3.66 15 24 H 0.23 7.13 7.80 -4.42 -0.03 7.09 15 25 H 0.08 3.23 6.77 -2.39 -0.02 3.21 15 26 H 0.10 4.61 6.53 -2.39 -0.02 4.59 15 27 H 0.28 13.31 8.31 -92.71 -0.77 12.54 15 28 H 0.19 3.29 8.06 -2.91 -0.02 3.27 15 29 H 0.20 2.86 8.06 -2.91 -0.02 2.84 15 Total: -1.00 -70.72 283.74 8.75 -61.97 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.22 Total: 7.12 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 4.76 Total: 3.14 kcal Atomic # 7 Polarization: -66.81 SS G_CDS: -1.48 Total: -68.29 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.07 Total: -38.30 kcal Atomic # 9 Polarization: -11.51 SS G_CDS: 2.29 Total: -9.22 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -70.72 8.75 -61.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302304146.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.319 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds