Wall clock time and date at job start Tue Mar 31 2020 06:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46498 * 109.46921 * 207.10443 * 3 2 1 5 5 C 1.36911 * 119.99948 * 263.99068 * 4 3 2 6 6 H 1.07996 * 120.00060 * 197.58235 * 5 4 3 7 7 C 1.39016 * 119.99900 * 17.59383 * 5 4 3 8 8 N 1.31379 * 120.00220 * 13.67523 * 7 5 4 9 9 Si 1.86804 * 119.99830 * 193.68314 * 7 5 4 10 10 H 1.48495 * 109.47075 * 59.99270 * 9 7 5 11 11 H 1.48495 * 109.47076 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46730 * 299.99366 * 9 7 5 13 13 C 1.34779 * 120.00160 * 83.99538 * 4 3 2 14 14 O 1.21618 * 119.99848 * 5.09035 * 13 4 3 15 15 C 1.47466 * 120.00123 * 185.08976 * 13 4 3 16 16 C 1.39800 * 120.14213 * 43.65131 * 15 13 4 17 17 C 1.37738 * 119.94284 * 180.02562 * 16 15 13 18 18 C 1.38731 * 120.21739 * 359.97438 * 17 16 15 19 19 F 1.35100 * 119.85941 * 180.02562 * 18 17 16 20 20 C 1.38679 * 120.27711 * 0.02562 * 18 17 16 21 21 F 1.35093 * 119.96920 * 179.97438 * 20 18 17 22 22 C 1.38361 * 120.06136 * 359.72093 * 20 18 17 23 23 F 1.35096 * 120.11263 * 180.30165 * 22 20 18 24 24 H 4.40639 * 5.51495 * 179.97438 * 4 1 2 25 25 H 1.08996 * 109.47117 * 327.10227 * 3 2 1 26 26 H 1.09004 * 109.47198 * 87.10558 * 3 2 1 27 27 H 0.97004 * 120.00408 * 180.02562 * 8 7 5 28 28 H 1.08005 * 120.02670 * 0.02562 * 16 15 13 29 29 H 1.08003 * 119.89058 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2304 0.6293 5 6 3.4784 2.3055 -0.1452 6 1 4.0925 3.0928 0.2664 7 6 3.0378 2.3838 -1.4613 8 7 2.0849 1.5841 -1.8838 9 14 3.8009 3.6260 -2.6294 10 1 5.2564 3.3596 -2.7534 11 1 3.1609 3.5083 -3.9642 12 1 3.5920 4.9972 -2.0990 13 6 3.2432 1.3034 1.9707 14 8 3.0261 0.3203 2.6529 15 6 3.6262 2.5753 2.6111 16 6 3.0532 3.7768 2.1839 17 6 3.4143 4.9625 2.7846 18 6 4.3451 4.9690 3.8133 19 9 4.6936 6.1361 4.3978 20 6 4.9192 3.7824 4.2442 21 9 5.8253 3.7960 5.2461 22 6 4.5609 2.5842 3.6525 23 9 5.1151 1.4270 4.0755 24 1 -1.0502 -0.0002 -0.0003 25 1 3.0097 -0.8620 0.5581 26 1 3.0094 -0.0511 -1.0264 27 1 1.7777 1.6384 -2.8022 28 1 2.3279 3.7753 1.3836 29 1 2.9713 5.8903 2.4537 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305962876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:33 Heat of formation + Delta-G solvation = -80.327911 kcal Electronic energy + Delta-G solvation = -21866.887464 eV Core-core repulsion = 17921.804303 eV Total energy + Delta-G solvation = -3945.083161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.056 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.84981 -50.24262 -49.53146 -41.08572 -39.10343 -37.11934 -33.85887 -33.46024 -31.75088 -31.67397 -28.40448 -26.85706 -24.70850 -24.23373 -21.59285 -20.17763 -19.35109 -19.15760 -18.77785 -18.24362 -17.88938 -17.51187 -16.90991 -16.55646 -16.33492 -16.13820 -16.01377 -15.83734 -15.48970 -15.45298 -15.05534 -14.32986 -14.08109 -13.89515 -13.39167 -13.10401 -13.01897 -12.92432 -12.70057 -12.42343 -12.13430 -11.29943 -11.26126 -10.65549 -10.58325 -10.05336 -9.93474 -9.89494 -8.30718 -5.97707 -0.57271 -0.31947 1.42331 1.54505 1.62518 1.69139 1.93726 2.20686 2.29941 2.34067 2.41200 2.87250 3.07632 3.09714 3.15052 3.51250 3.59024 3.85742 4.02060 4.35236 4.53146 4.72590 4.77733 4.91116 4.98940 5.05580 5.37532 5.39506 5.51935 5.62685 6.32080 7.01099 7.11419 7.35477 7.78242 8.65752 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.017112 B = 0.006914 C = 0.005568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.914069 B = 4048.953377 C = 5027.138078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.148 4.148 3 C 0.239 3.761 4 N -0.421 5.421 5 C -0.362 4.362 6 H 0.118 0.882 7 C 0.009 3.991 8 N -0.869 5.869 9 Si 0.986 3.014 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.253 1.253 13 C 0.473 3.527 14 O -0.629 6.629 15 C -0.121 4.121 16 C -0.018 4.018 17 C -0.116 4.116 18 C 0.113 3.887 19 F -0.116 7.116 20 C 0.017 3.983 21 F -0.125 7.125 22 C 0.109 3.891 23 F -0.127 7.127 24 H 0.237 0.763 25 H 0.060 0.940 26 H 0.112 0.888 27 H 0.275 0.725 28 H 0.167 0.833 29 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.188 8.760 2.340 9.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.150 4.150 3 C 0.117 3.883 4 N -0.135 5.135 5 C -0.488 4.488 6 H 0.135 0.865 7 C -0.196 4.196 8 N -0.505 5.505 9 Si 0.809 3.191 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.177 1.177 13 C 0.263 3.737 14 O -0.518 6.518 15 C -0.125 4.125 16 C -0.037 4.037 17 C -0.135 4.135 18 C 0.092 3.908 19 F -0.094 7.094 20 C -0.005 4.005 21 F -0.104 7.104 22 C 0.088 3.912 23 F -0.105 7.105 24 H 0.254 0.746 25 H 0.078 0.922 26 H 0.130 0.870 27 H 0.086 0.914 28 H 0.184 0.816 29 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.064 8.217 2.503 8.656 hybrid contribution 0.526 -0.081 -0.230 0.580 sum 1.589 8.136 2.273 8.596 Atomic orbital electron populations 1.25160 0.96321 1.01447 1.03837 1.23336 0.94888 0.99114 0.97614 1.18133 0.84945 0.86088 0.99174 1.43781 1.53028 1.13056 1.03683 1.20124 1.32120 1.01928 0.94637 0.86488 1.26113 0.94789 0.99681 0.99046 1.70146 1.23986 1.38123 1.18251 0.85070 0.78169 0.78949 0.76881 1.19835 1.21157 1.17660 1.18073 0.84986 0.87954 0.82669 1.90661 1.58968 1.38397 1.63773 1.19998 0.99042 0.96556 0.96884 1.21465 0.96759 0.88572 0.96907 1.21412 0.96802 1.01174 0.94094 1.17465 0.98190 0.79291 0.95805 1.91559 1.90798 1.44257 1.82786 1.17364 0.97060 0.92630 0.93405 1.91508 1.64329 1.97078 1.57492 1.17534 0.96491 0.80721 0.96494 1.91515 1.83483 1.46836 1.88712 0.74622 0.92245 0.86998 0.91423 0.81597 0.78406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.34 19.25 74.32 1.43 -8.90 15 2 C -0.15 -6.95 11.65 31.12 0.36 -6.59 15 3 C 0.24 11.37 5.10 84.57 0.43 11.80 15 4 N -0.42 -20.11 2.60 -649.12 -1.69 -21.80 15 5 C -0.36 -16.02 7.58 84.09 0.64 -15.38 15 6 H 0.12 4.77 5.84 -2.91 -0.02 4.75 15 7 C 0.01 0.39 5.07 84.95 0.43 0.82 15 8 N -0.87 -40.09 9.06 21.67 0.20 -39.90 15 9 Si 0.99 34.11 29.58 68.60 2.03 36.14 15 10 H -0.27 -9.55 7.11 99.48 0.71 -8.84 15 11 H -0.29 -10.08 7.11 99.48 0.71 -9.38 15 12 H -0.25 -8.05 7.11 99.48 0.71 -7.35 15 13 C 0.47 22.92 6.99 86.67 0.61 23.52 15 14 O -0.63 -34.55 16.06 -4.09 -0.07 -34.62 15 15 C -0.12 -4.79 5.04 -20.06 -0.10 -4.89 15 16 C -0.02 -0.57 7.66 22.53 0.17 -0.39 15 17 C -0.12 -2.74 10.00 22.27 0.22 -2.52 15 18 C 0.11 3.02 7.31 22.49 0.16 3.19 15 19 F -0.12 -2.88 17.17 44.97 0.77 -2.11 15 20 C 0.02 0.54 7.30 22.40 0.16 0.70 15 21 F -0.13 -4.12 17.09 44.97 0.77 -3.35 15 22 C 0.11 4.20 7.25 22.71 0.16 4.36 15 23 F -0.13 -5.48 16.26 44.97 0.73 -4.75 15 24 H 0.24 7.45 7.80 -4.41 -0.03 7.41 15 25 H 0.06 2.85 7.54 -2.39 -0.02 2.83 15 26 H 0.11 5.36 6.17 -2.39 -0.01 5.34 15 27 H 0.28 12.18 8.31 -92.71 -0.77 11.41 15 28 H 0.17 5.32 6.89 -2.91 -0.02 5.30 15 29 H 0.20 2.94 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -58.92 279.94 8.65 -50.27 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.22 Total: 14.39 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 4.69 Total: 5.72 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -1.49 Total: -61.69 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.07 Total: -34.62 kcal Atomic # 9 Polarization: -12.48 SS G_CDS: 2.27 Total: -10.21 kcal Atomic # 14 Polarization: 34.11 SS G_CDS: 2.03 Total: 36.14 kcal Total: -58.92 8.65 -50.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305962876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.061 kcal (2) G-P(sol) polarization free energy of solvation -58.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds