Wall clock time and date at job start Tue Mar 31 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47410 * 274.96751 * 3 2 1 5 5 H 1.48501 * 109.46937 * 34.96656 * 3 2 1 6 6 H 1.48501 * 109.47282 * 154.96678 * 3 2 1 7 7 C 1.39932 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 196.79252 * 7 2 1 9 9 C 1.41406 * 119.99673 * 16.78575 * 7 2 1 10 10 C 1.40772 * 120.21208 * 25.17231 * 9 7 2 11 11 C 1.37644 * 119.88703 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32092 * 0.02562 * 11 10 9 13 13 C 1.39252 * 120.43145 * 359.96077 * 12 11 10 14 14 N 1.39935 * 119.94712 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99656 * 145.79738 * 14 13 12 16 16 O 1.21288 * 119.99865 * 354.88930 * 15 14 13 17 17 C 1.50695 * 119.99904 * 174.89179 * 15 14 13 18 18 Br 1.96606 * 109.47217 * 179.97438 * 17 15 14 19 19 C 1.38282 * 120.10102 * 0.27507 * 13 12 11 20 20 H 0.97000 * 120.00366 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.05646 * 0.02562 * 10 9 7 22 22 H 1.08004 * 119.84135 * 179.97438 * 11 10 9 23 23 H 1.08002 * 119.78554 * 179.97438 * 12 11 10 24 24 H 0.96997 * 120.00379 * 325.79279 * 14 13 12 25 25 H 1.08996 * 109.47568 * 59.99677 * 17 15 14 26 26 H 1.09000 * 109.47371 * 299.99540 * 17 15 14 27 27 H 1.07997 * 120.15721 * 179.72220 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4961 2.6201 0.8024 6 1 3.5884 1.4123 0.5924 7 6 2.0081 -1.2118 -0.0005 8 1 3.0535 -1.2317 0.2697 9 6 1.3462 -2.4102 -0.3547 10 6 0.2109 -2.3733 -1.1863 11 6 -0.4284 -3.5438 -1.5264 12 6 0.0395 -4.7590 -1.0540 13 6 1.1615 -4.8110 -0.2309 14 7 1.6251 -6.0441 0.2410 15 6 2.9467 -6.2469 0.4110 16 8 3.7398 -5.3957 0.0682 17 6 3.4389 -7.5312 1.0268 18 35 5.4022 -7.5000 1.1264 19 6 1.8145 -3.6455 0.1259 20 1 -0.4851 0.8400 0.0004 21 1 -0.1578 -1.4281 -1.5567 22 1 -1.2997 -3.5146 -2.1641 23 1 -0.4691 -5.6721 -1.3260 24 1 0.9954 -6.7529 0.4459 25 1 3.1199 -8.3739 0.4135 26 1 3.0255 -7.6350 2.0300 27 1 2.6821 -3.6844 0.7678 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306181870.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:39 Heat of formation + Delta-G solvation = -13.675126 kcal Electronic energy + Delta-G solvation = -14157.934377 eV Core-core repulsion = 11540.737703 eV Total energy + Delta-G solvation = -2617.196674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.71461 -37.20662 -34.52590 -33.10964 -31.79154 -29.84803 -28.84311 -26.79661 -25.30609 -21.68767 -20.87999 -19.67634 -17.78210 -16.84930 -15.67294 -15.46877 -15.03571 -14.60588 -13.85635 -13.40099 -12.96291 -12.77755 -12.55710 -12.08306 -11.67570 -11.21329 -11.14499 -10.94289 -10.46586 -10.22836 -9.95386 -9.92995 -9.70414 -9.49991 -9.11471 -9.04346 -7.47816 -6.97047 -6.73178 -4.35401 1.44827 2.47445 2.80970 3.09713 3.15289 3.16986 3.27377 3.48361 3.96442 4.62210 4.76912 4.82271 4.99092 5.69407 6.20972 6.35448 6.66919 6.95510 7.00842 7.04756 7.23316 7.49576 7.68280 7.92962 8.06736 8.10416 8.20466 8.54190 8.67272 8.92023 8.96110 10.20312 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004656 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.839045 B = 6012.341900 C = 6989.087549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.170 4.170 11 C -0.092 4.092 12 C -0.261 4.261 13 C 0.150 3.850 14 N -0.663 5.663 15 C 0.498 3.502 16 O -0.491 6.491 17 C -0.110 4.110 18 Br -0.111 7.111 19 C -0.210 4.210 20 H 0.280 0.720 21 H 0.120 0.880 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.399 0.601 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.838 -13.675 2.764 14.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.111 4.111 12 C -0.282 4.282 13 C 0.059 3.941 14 N -0.308 5.308 15 C 0.282 3.718 16 O -0.363 6.363 17 C -0.230 4.230 18 Br -0.030 7.030 19 C -0.232 4.232 20 H 0.091 0.909 21 H 0.137 0.863 22 H 0.110 0.890 23 H 0.107 0.893 24 H 0.233 0.767 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.926 -12.902 2.602 14.054 hybrid contribution -0.568 0.234 0.161 0.635 sum 4.358 -12.668 2.763 13.679 Atomic orbital electron populations 1.69826 1.07544 1.29145 1.35530 1.25909 0.94745 1.01320 0.92203 0.86282 0.80675 0.80538 0.79152 1.19319 1.20312 1.18489 1.19617 0.97852 0.90934 1.40307 0.90257 1.17488 0.90875 0.91622 0.88311 1.21366 0.99301 0.96903 1.01431 1.20465 0.98540 0.92685 0.99448 1.20025 1.02374 0.96941 1.08884 1.17404 0.96279 0.83063 0.97379 1.43291 1.06380 1.15473 1.65627 1.20037 0.83201 0.88357 0.80249 1.90853 1.53972 1.44319 1.47178 1.24860 0.90652 1.00879 1.06584 1.97400 1.07148 1.99270 1.99162 1.20975 1.04363 0.90994 1.06844 0.90921 0.86269 0.88982 0.89267 0.76686 0.85820 0.85655 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.63 10.94 55.55 0.61 -20.02 15 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 15 3 Si 0.91 19.13 29.59 -169.99 -5.03 14.10 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.46 -12.56 9.05 -37.74 -0.34 -12.90 15 8 H 0.08 2.16 7.90 -52.49 -0.41 1.74 15 9 C 0.12 3.29 5.57 -106.85 -0.59 2.70 15 10 C -0.17 -4.45 8.69 -38.84 -0.34 -4.79 15 11 C -0.09 -2.13 10.02 -39.69 -0.40 -2.53 15 12 C -0.26 -5.63 9.97 -39.10 -0.39 -6.02 15 13 C 0.15 3.32 6.25 -83.77 -0.52 2.80 15 14 N -0.66 -11.10 5.34 -9.91 -0.05 -11.16 15 15 C 0.50 8.33 7.59 -10.99 -0.08 8.25 15 16 O -0.49 -10.64 13.58 5.55 0.08 -10.57 15 17 C -0.11 -1.21 7.09 36.00 0.26 -0.96 15 18 Br -0.11 -1.46 33.04 -68.01 -2.25 -3.71 15 19 C -0.21 -5.40 8.39 -38.68 -0.32 -5.73 15 20 H 0.28 6.58 8.30 -40.82 -0.34 6.25 15 21 H 0.12 3.19 6.17 -52.48 -0.32 2.87 15 22 H 0.09 1.87 8.06 -52.48 -0.42 1.45 15 23 H 0.09 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.40 4.88 8.82 -40.82 -0.36 4.52 15 25 H 0.12 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.13 1.04 8.14 -51.93 -0.42 0.62 15 27 H 0.11 2.80 6.48 -52.49 -0.34 2.46 15 LS Contribution 261.65 15.07 3.94 3.94 Total: -1.00 -30.79 261.65 -7.80 -38.59 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.26 Total: 6.17 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -2.83 Total: -17.34 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.55 Total: -31.18 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 35 Polarization: -1.46 SS G_CDS: -2.25 Total: -3.71 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.79 -7.80 -38.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306181870.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.910 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds