Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86801 * 119.99798 * 2 1 4 4 H 1.48501 * 109.47410 * 274.96751 * 3 2 1 5 5 H 1.48501 * 109.46937 * 34.96656 * 3 2 1 6 6 H 1.48501 * 109.47282 * 154.96678 * 3 2 1 7 7 C 1.39932 * 120.00377 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99724 * 196.79252 * 7 2 1 9 9 C 1.41406 * 119.99673 * 16.78575 * 7 2 1 10 10 C 1.40772 * 120.21208 * 25.17231 * 9 7 2 11 11 C 1.37644 * 119.88703 * 180.02562 * 10 9 7 12 12 C 1.38526 * 120.32092 * 0.02562 * 11 10 9 13 13 C 1.39252 * 120.43145 * 359.96077 * 12 11 10 14 14 N 1.39935 * 119.94712 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99656 * 145.79738 * 14 13 12 16 16 O 1.21288 * 119.99865 * 354.88930 * 15 14 13 17 17 C 1.50695 * 119.99904 * 174.89179 * 15 14 13 18 18 Br 1.96606 * 109.47217 * 179.97438 * 17 15 14 19 19 C 1.38282 * 120.10102 * 0.27507 * 13 12 11 20 20 H 0.97000 * 120.00366 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.05646 * 0.02562 * 10 9 7 22 22 H 1.08004 * 119.84135 * 179.97438 * 11 10 9 23 23 H 1.08002 * 119.78554 * 179.97438 * 12 11 10 24 24 H 0.96997 * 120.00379 * 325.79279 * 14 13 12 25 25 H 1.08996 * 109.47568 * 59.99677 * 17 15 14 26 26 H 1.09000 * 109.47371 * 299.99540 * 17 15 14 27 27 H 1.07997 * 120.15721 * 179.72220 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3848 2.1071 -1.3948 5 1 1.4961 2.6201 0.8024 6 1 3.5884 1.4123 0.5924 7 6 2.0081 -1.2118 -0.0005 8 1 3.0535 -1.2317 0.2697 9 6 1.3462 -2.4102 -0.3547 10 6 0.2109 -2.3733 -1.1863 11 6 -0.4284 -3.5438 -1.5264 12 6 0.0395 -4.7590 -1.0540 13 6 1.1615 -4.8110 -0.2309 14 7 1.6251 -6.0441 0.2410 15 6 2.9467 -6.2469 0.4110 16 8 3.7398 -5.3957 0.0682 17 6 3.4389 -7.5312 1.0268 18 35 5.4022 -7.5000 1.1264 19 6 1.8145 -3.6455 0.1259 20 1 -0.4851 0.8400 0.0004 21 1 -0.1578 -1.4281 -1.5567 22 1 -1.2997 -3.5146 -2.1641 23 1 -0.4691 -5.6721 -1.3260 24 1 0.9954 -6.7529 0.4459 25 1 3.1199 -8.3739 0.4135 26 1 3.0255 -7.6350 2.0300 27 1 2.6821 -3.6844 0.7678 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306181870.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -33.662311 kcal Electronic energy + Delta-G solvation = -14158.801087 eV Core-core repulsion = 11540.737703 eV Total energy + Delta-G solvation = -2618.063384 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20917 -38.98037 -36.23477 -34.86973 -32.85966 -31.75779 -30.34748 -28.09410 -27.23203 -23.34228 -22.70908 -21.22637 -19.55824 -18.22133 -17.47077 -16.93227 -16.60202 -16.39922 -15.35020 -15.05949 -14.64114 -14.18159 -13.87843 -13.53270 -13.46288 -12.98911 -12.92205 -12.78352 -12.18836 -11.97969 -11.53858 -11.20031 -10.96318 -10.93394 -10.88034 -10.71394 -9.40273 -8.77218 -8.61775 -6.37915 0.51279 0.84204 0.98989 1.35920 1.46884 1.49527 1.72127 2.17150 2.21318 2.72549 3.57260 3.74626 4.04467 4.20325 4.46922 4.63159 5.02829 5.09389 5.11531 5.21302 5.32186 5.73619 5.84481 6.07536 6.10449 6.33490 6.56284 6.67898 6.93110 7.00196 7.25586 8.32312 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.004656 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.839045 B = 6012.341900 C = 6989.087549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.039 3.961 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.503 4.503 8 H 0.062 0.938 9 C 0.089 3.911 10 C -0.198 4.198 11 C -0.092 4.092 12 C -0.248 4.248 13 C 0.159 3.841 14 N -0.651 5.651 15 C 0.493 3.507 16 O -0.547 6.547 17 C -0.093 4.093 18 Br -0.134 7.134 19 C -0.238 4.238 20 H 0.289 0.711 21 H 0.103 0.897 22 H 0.123 0.877 23 H 0.135 0.865 24 H 0.426 0.574 25 H 0.168 0.832 26 H 0.162 0.838 27 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.810 -15.572 2.727 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.190 1.190 7 C -0.533 4.533 8 H 0.080 0.920 9 C 0.086 3.914 10 C -0.218 4.218 11 C -0.111 4.111 12 C -0.269 4.269 13 C 0.066 3.934 14 N -0.298 5.298 15 C 0.280 3.720 16 O -0.423 6.423 17 C -0.212 4.212 18 Br -0.053 7.053 19 C -0.259 4.259 20 H 0.100 0.900 21 H 0.121 0.879 22 H 0.141 0.859 23 H 0.153 0.847 24 H 0.264 0.736 25 H 0.185 0.815 26 H 0.180 0.820 27 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.865 -14.864 2.581 15.574 hybrid contribution -0.314 0.639 0.161 0.730 sum 3.551 -14.224 2.742 14.915 Atomic orbital electron populations 1.69852 1.08663 1.30536 1.35693 1.26671 0.95590 1.04159 0.91204 0.85229 0.78964 0.76153 0.79563 1.18465 1.18549 1.18981 1.19754 0.97502 0.92782 1.43267 0.92002 1.17823 0.91934 0.92421 0.89232 1.21325 1.00042 0.97668 1.02765 1.20854 0.98914 0.92239 0.99091 1.20493 1.01499 0.98092 1.06821 1.17458 0.95588 0.84147 0.96253 1.43164 1.07324 1.14267 1.65043 1.21011 0.82484 0.89573 0.78954 1.90853 1.55326 1.46775 1.49317 1.24940 0.88845 0.98500 1.08936 1.97421 1.09527 1.99185 1.99177 1.20948 1.04664 0.92314 1.07994 0.89990 0.87880 0.85892 0.84703 0.73555 0.81452 0.82026 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.81 10.94 21.82 0.24 -43.58 15 2 C 0.04 2.04 5.16 85.25 0.44 2.48 15 3 Si 0.98 40.28 29.59 68.60 2.03 42.31 15 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 6 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 7 C -0.50 -29.30 9.05 23.46 0.21 -29.08 15 8 H 0.06 3.64 7.90 -2.91 -0.02 3.62 15 9 C 0.09 5.08 5.57 -21.31 -0.12 4.96 15 10 C -0.20 -10.60 8.69 22.75 0.20 -10.40 15 11 C -0.09 -4.13 10.02 22.20 0.22 -3.90 15 12 C -0.25 -9.97 9.97 22.58 0.23 -9.74 15 13 C 0.16 6.82 6.25 38.10 0.24 7.06 15 14 N -0.65 -19.94 5.34 -303.65 -1.62 -21.56 15 15 C 0.49 15.53 7.59 87.65 0.67 16.20 15 16 O -0.55 -23.87 13.58 -3.05 -0.04 -23.91 15 17 C -0.09 -1.72 7.09 71.23 0.51 -1.21 15 18 Br -0.13 -3.32 33.04 -20.37 -0.67 -4.00 15 19 C -0.24 -12.60 8.39 22.85 0.19 -12.41 15 20 H 0.29 13.81 8.30 -92.71 -0.77 13.04 15 21 H 0.10 5.74 6.17 -2.91 -0.02 5.72 15 22 H 0.12 4.66 8.06 -2.91 -0.02 4.63 15 23 H 0.14 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.43 8.43 8.82 -92.71 -0.82 7.61 15 25 H 0.17 1.71 8.14 -2.39 -0.02 1.69 15 26 H 0.16 1.91 8.14 -2.39 -0.02 1.89 15 27 H 0.08 4.74 6.48 -2.91 -0.02 4.73 15 Total: -1.00 -71.86 261.65 3.10 -68.76 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.39 Total: 18.03 kcal Atomic # 6 Polarization: -38.83 SS G_CDS: 2.78 Total: -36.05 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.38 Total: -65.14 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.04 Total: -23.91 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 35 Polarization: -3.32 SS G_CDS: -0.67 Total: -4.00 kcal Total: -71.86 3.10 -68.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306181870.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.098 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds