Wall clock time and date at job start Tue Mar 31 2020 05:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.37932 * 120.07454 * 2 1 4 4 C 1.38380 * 120.18538 * 180.25106 * 3 2 1 5 5 C 1.38354 * 120.32084 * 359.76359 * 4 3 2 6 6 C 1.38047 * 120.13808 * 359.95275 * 5 4 3 7 7 Br 1.89099 * 120.09163 * 180.02562 * 6 5 4 8 8 C 1.39642 * 120.07524 * 179.71276 * 2 1 3 9 9 C 1.47675 * 120.15743 * 0.02562 * 8 2 1 10 10 O 1.21603 * 119.99947 * 269.72475 * 9 8 2 11 11 N 1.34777 * 120.00036 * 89.44988 * 9 8 2 12 12 C 1.36878 * 119.99890 * 180.27703 * 11 9 8 13 13 H 1.08001 * 119.99864 * 0.02562 * 12 11 9 14 14 C 1.39045 * 120.00106 * 179.97438 * 12 11 9 15 15 N 1.31374 * 119.99422 * 359.97438 * 14 12 11 16 16 Si 1.86789 * 120.00302 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47675 * 89.99856 * 16 14 12 18 18 H 1.48501 * 109.47162 * 210.00029 * 16 14 12 19 19 H 1.48503 * 109.47180 * 329.99722 * 16 14 12 20 20 H 1.09001 * 109.47312 * 270.28147 * 1 2 3 21 21 H 1.09002 * 109.47104 * 30.28752 * 1 2 3 22 22 H 1.08999 * 109.47010 * 150.27884 * 1 2 3 23 23 H 1.08004 * 119.90889 * 359.96778 * 3 2 1 24 24 H 1.07998 * 119.84677 * 179.73673 * 4 3 2 25 25 H 1.07998 * 119.92990 * 179.97438 * 5 4 3 26 26 H 0.97000 * 119.99736 * 0.27181 * 11 9 8 27 27 H 0.97000 * 119.99065 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1936 0.0000 4 6 3.5819 1.1963 -0.0052 5 6 4.2827 0.0034 -0.0056 6 6 3.6044 -1.1989 0.0003 7 35 4.5636 -2.8286 0.0005 8 6 2.2067 -1.2084 0.0061 9 6 1.4736 -2.4903 0.0119 10 8 1.1757 -3.0155 1.0674 11 7 1.1297 -3.0753 -1.1526 12 6 0.4452 -4.2606 -1.1471 13 1 0.1802 -4.7268 -0.2096 14 6 0.0899 -4.8639 -2.3484 15 7 0.4109 -4.2959 -3.4887 16 14 -0.8448 -6.4810 -2.3410 17 1 -2.3047 -6.2090 -2.3324 18 1 -0.4938 -7.2612 -3.5548 19 1 -0.4791 -7.2586 -1.1298 20 1 -0.3634 0.0050 1.0276 21 1 -0.3633 0.8874 -0.5183 22 1 -0.3633 -0.8925 -0.5095 23 1 1.6579 2.1288 -0.0005 24 1 4.1176 2.1341 -0.0095 25 1 5.3627 0.0128 -0.0101 26 1 1.3673 -2.6562 -1.9945 27 1 0.1634 -4.7170 -4.3268 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306367364.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:25 Heat of formation + Delta-G solvation = -17.911663 kcal Electronic energy + Delta-G solvation = -14467.129620 eV Core-core repulsion = 11849.749235 eV Total energy + Delta-G solvation = -2617.380384 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.54380 -37.43453 -33.95913 -32.93573 -31.79550 -31.02266 -29.12084 -26.88005 -25.16146 -22.79328 -21.17596 -19.47756 -18.01924 -16.66367 -15.58629 -15.44514 -14.77171 -14.18955 -13.93577 -13.42276 -13.08264 -12.75838 -12.71010 -12.19291 -12.08073 -11.59832 -11.21074 -11.11578 -10.91777 -10.42860 -10.40402 -10.25418 -9.78663 -9.54583 -8.69566 -8.41623 -8.33549 -8.00818 -6.45125 -3.84822 1.28141 1.41234 1.98898 3.15447 3.25663 3.31728 3.73251 3.79095 4.15370 4.78119 4.94326 5.00659 5.23462 5.35750 5.52318 5.58012 5.87496 5.93267 5.96852 6.18098 6.39459 6.42678 6.47377 6.70943 6.98794 7.52414 8.00275 8.54948 9.12314 9.47907 9.98397 10.71898 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.020423 B = 0.007776 C = 0.006262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.690522 B = 3600.113020 C = 4470.151202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.054 4.054 3 C -0.113 4.113 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.064 4.064 7 Br -0.040 7.040 8 C -0.064 4.064 9 C 0.477 3.523 10 O -0.580 6.580 11 N -0.540 5.540 12 C -0.300 4.300 13 H 0.105 0.895 14 C 0.027 3.973 15 N -0.894 5.894 16 Si 0.930 3.070 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.079 0.921 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.131 0.869 26 H 0.394 0.606 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.941 9.845 2.889 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.055 4.055 3 C -0.131 4.131 4 C -0.132 4.132 5 C -0.125 4.125 6 C -0.145 4.145 7 Br 0.046 6.954 8 C -0.070 4.070 9 C 0.262 3.738 10 O -0.465 6.465 11 N -0.173 5.173 12 C -0.430 4.430 13 H 0.123 0.877 14 C -0.176 4.176 15 N -0.534 5.534 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.193 1.193 20 H 0.093 0.907 21 H 0.086 0.914 22 H 0.098 0.902 23 H 0.146 0.854 24 H 0.146 0.854 25 H 0.149 0.851 26 H 0.227 0.773 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.059 8.774 3.372 11.755 hybrid contribution -0.387 -0.134 -0.606 0.731 sum 6.672 8.641 2.766 11.262 Atomic orbital electron populations 1.20857 0.90254 1.03506 1.02909 1.20032 0.96625 0.91382 0.97497 1.21048 0.94213 0.97413 1.00444 1.21119 0.94171 0.97452 1.00464 1.20982 0.99995 0.90779 1.00712 1.21947 0.93685 0.92399 1.06423 1.96727 1.72993 1.28206 1.97440 1.20270 0.91952 0.95774 0.98976 1.17459 0.85718 0.85166 0.85466 1.90645 1.59528 1.65458 1.30918 1.41777 1.48326 1.20912 1.06313 1.19710 1.30879 0.97828 0.94562 0.87689 1.25297 0.97921 0.99776 0.94595 1.69611 1.46229 1.39950 0.97634 0.85859 0.79390 0.81142 0.77943 1.20315 1.20859 1.19282 0.90685 0.91386 0.90225 0.85419 0.85369 0.85137 0.77277 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 9.62 36.00 0.35 -1.56 15 2 C -0.05 -0.93 5.91 -104.21 -0.62 -1.54 15 3 C -0.11 -1.54 9.69 -39.64 -0.38 -1.92 15 4 C -0.11 -1.43 10.04 -39.49 -0.40 -1.83 15 5 C -0.10 -1.53 9.78 -39.61 -0.39 -1.91 15 6 C -0.06 -1.18 6.26 -39.08 -0.24 -1.43 15 7 Br -0.04 -0.75 32.65 -68.01 -2.22 -2.97 15 8 C -0.06 -1.32 5.63 -104.95 -0.59 -1.91 15 9 C 0.48 11.77 4.54 -12.41 -0.06 11.71 15 10 O -0.58 -16.34 16.68 5.27 0.09 -16.25 15 11 N -0.54 -13.92 5.27 -11.88 -0.06 -13.99 15 12 C -0.30 -8.32 9.68 -15.00 -0.15 -8.47 15 13 H 0.11 3.05 7.15 -52.49 -0.38 2.67 15 14 C 0.03 0.71 5.50 -17.45 -0.10 0.62 15 15 N -0.89 -24.17 13.05 55.50 0.72 -23.45 15 16 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 15 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 20 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 21 H 0.07 0.86 8.09 -51.93 -0.42 0.44 15 22 H 0.08 1.51 7.08 -51.93 -0.37 1.14 15 23 H 0.13 1.33 8.06 -52.48 -0.42 0.90 15 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 15 25 H 0.13 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.39 10.03 7.88 -40.82 -0.32 9.71 15 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 LS Contribution 265.98 15.07 4.01 4.01 Total: -1.00 -30.73 265.98 -7.37 -38.09 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -2.31 Total: 6.92 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.57 Total: -8.24 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.66 Total: -37.43 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.25 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.22 Total: -2.97 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.73 -7.37 -38.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306367364.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.181 kcal (2) G-P(sol) polarization free energy of solvation -30.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds