Wall clock time and date at job start Tue Mar 31 2020 05:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 N 1.46500 * 109.46686 * 119.99429 * 2 1 3 5 5 C 1.36936 * 120.00498 * 305.35431 * 4 2 1 6 6 H 1.08007 * 119.99545 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00300 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00356 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00065 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47605 * 119.99711 * 9 7 5 12 12 H 1.48501 * 109.47103 * 240.00465 * 9 7 5 13 13 C 1.50695 * 109.47519 * 239.99479 * 2 1 3 14 14 C 1.38245 * 119.98963 * 84.15611 * 13 2 1 15 15 C 1.38218 * 120.00893 * 179.76819 * 14 13 2 16 16 C 1.38322 * 119.98861 * 0.50952 * 15 14 13 17 17 Br 1.89106 * 120.00793 * 179.72162 * 16 15 14 18 18 C 1.38325 * 119.98447 * 359.74704 * 16 15 14 19 19 C 1.38220 * 119.98523 * 0.02562 * 18 16 15 20 20 H 1.08999 * 109.47446 * 300.00988 * 1 2 3 21 21 H 1.09002 * 109.46326 * 60.00636 * 1 2 3 22 22 H 1.09002 * 109.47132 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47576 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46738 * 299.99778 * 3 2 1 25 25 H 1.09000 * 109.47175 * 59.98946 * 3 2 1 26 26 H 0.97005 * 120.00109 * 125.62845 * 4 2 1 27 27 H 0.97000 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.99081 * 0.02562 * 14 13 2 29 29 H 1.07996 * 120.00700 * 180.23882 * 15 14 13 30 30 H 1.07995 * 120.00669 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.99453 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.5995 -0.2900 2.4370 6 1 0.9089 0.5349 2.5336 7 6 2.0617 -0.9446 3.5704 8 7 2.9029 -1.9500 3.4527 9 14 1.4899 -0.3986 5.2628 10 1 0.5531 0.7453 5.1237 11 1 0.7988 -1.5254 5.9394 12 1 2.6636 0.0192 6.0710 13 6 2.0324 -0.7105 -1.2303 14 6 2.1479 -0.0251 -2.4253 15 6 2.6132 -0.6751 -3.5529 16 6 2.9534 -2.0143 -3.4880 17 35 3.5826 -2.9061 -5.0323 18 6 2.8327 -2.7011 -2.2934 19 6 2.3717 -2.0490 -1.1652 20 1 -0.3634 0.5140 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 2.6413 -1.4290 1.1097 27 1 3.2256 -2.4077 4.2447 28 1 1.8784 1.0195 -2.4768 29 1 2.7070 -0.1387 -4.4855 30 1 3.0978 -3.7467 -2.2424 31 1 2.2771 -2.5852 -0.2325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307514989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:04 Heat of formation + Delta-G solvation = 35.324575 kcal Electronic energy + Delta-G solvation = -14720.483410 eV Core-core repulsion = 12241.244617 eV Total energy + Delta-G solvation = -2479.238793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.47857 -36.25366 -32.73535 -31.39888 -30.93515 -29.01842 -28.15506 -26.53172 -24.26077 -22.24536 -22.08789 -18.97265 -17.46146 -16.28432 -15.30041 -14.78635 -14.36591 -13.81934 -13.57538 -13.34361 -13.19617 -12.63846 -12.46772 -11.82722 -11.53683 -11.43988 -11.10639 -10.91152 -10.74614 -10.64585 -10.45673 -10.35879 -10.19359 -9.87296 -9.57435 -8.98914 -8.77594 -8.29742 -7.01975 -5.80433 -3.09354 1.34663 1.55977 1.74414 3.41057 3.46814 3.48977 3.88872 4.55100 4.98372 5.08991 5.17074 5.46317 5.52710 5.60823 5.71551 5.82576 6.00967 6.05106 6.18598 6.27535 6.36191 6.42722 6.53725 6.58522 6.65810 6.93953 6.96116 7.10075 7.12712 7.69354 8.37734 9.49467 10.03836 10.39492 11.42571 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.038548 B = 0.004250 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.186671 B = 6586.210590 C = 7090.909714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.227 3.773 3 C -0.153 4.153 4 N -0.719 5.719 5 C -0.233 4.233 6 H 0.073 0.927 7 C -0.013 4.013 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.043 4.043 14 C -0.115 4.115 15 C -0.096 4.096 16 C -0.101 4.101 17 Br -0.071 7.071 18 C -0.090 4.090 19 C -0.101 4.101 20 H 0.062 0.938 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.050 0.950 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.385 0.615 27 H 0.255 0.745 28 H 0.131 0.869 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 0.374 -17.263 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.136 3.864 3 C -0.212 4.212 4 N -0.362 5.362 5 C -0.364 4.364 6 H 0.091 0.909 7 C -0.209 4.209 8 N -0.582 5.582 9 Si 0.736 3.264 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.044 4.044 14 C -0.134 4.134 15 C -0.116 4.116 16 C -0.180 4.180 17 Br 0.014 6.986 18 C -0.110 4.110 19 C -0.120 4.120 20 H 0.081 0.919 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.222 0.778 27 H 0.065 0.935 28 H 0.149 0.851 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.140 0.104 -17.679 17.680 hybrid contribution -0.127 0.183 1.338 1.357 sum -0.266 0.287 -16.341 16.346 Atomic orbital electron populations 1.22182 0.96218 1.01517 1.00455 1.18549 0.92515 0.90887 0.84441 1.22351 1.01090 0.97402 1.00372 1.42624 1.54472 1.39039 1.00108 1.19198 1.21438 1.12450 0.83352 0.90892 1.24717 0.99913 0.98470 0.97759 1.69658 1.35959 1.24224 1.28341 0.86151 0.77766 0.77674 0.84788 1.20557 1.21907 1.21926 1.20424 0.94736 0.93941 0.95329 1.21079 1.00293 1.00233 0.91825 1.20978 0.99018 0.92529 0.99028 1.21657 1.08166 0.95764 0.92444 1.96627 1.87706 1.78279 1.35948 1.21108 0.98717 1.00007 0.91195 1.21292 0.97509 0.94678 0.98520 0.91933 0.94168 0.92935 0.93039 0.94067 0.92141 0.77838 0.93530 0.85119 0.85597 0.85373 0.83871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 8.34 37.16 0.31 -2.28 16 2 C 0.23 4.33 0.98 -132.97 -0.13 4.20 16 3 C -0.15 -2.70 7.97 37.16 0.30 -2.40 16 4 N -0.72 -17.11 4.84 -48.31 -0.23 -17.34 16 5 C -0.23 -6.15 8.70 -15.06 -0.13 -6.28 16 6 H 0.07 1.87 6.69 -52.48 -0.35 1.52 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 9 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 C -0.04 -0.74 4.80 -104.62 -0.50 -1.24 16 14 C -0.12 -1.67 9.15 -39.59 -0.36 -2.03 16 15 C -0.10 -1.29 9.79 -39.56 -0.39 -1.68 16 16 C -0.10 -1.43 6.22 -39.52 -0.25 -1.68 16 17 Br -0.07 -0.86 33.70 -68.01 -2.29 -3.15 16 18 C -0.09 -1.37 9.79 -39.56 -0.39 -1.75 16 19 C -0.10 -1.74 9.00 -39.59 -0.36 -2.10 16 20 H 0.06 1.17 6.99 -51.93 -0.36 0.81 16 21 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.59 6.52 -51.93 -0.34 0.25 16 25 H 0.06 1.13 7.59 -51.93 -0.39 0.74 16 26 H 0.39 9.75 5.73 -40.82 -0.23 9.51 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.13 1.64 6.35 -52.49 -0.33 1.31 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.14 2.72 6.49 -52.48 -0.34 2.38 16 LS Contribution 277.92 15.07 4.19 4.19 Total: -1.00 -28.22 277.92 -8.23 -36.45 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -3.60 Total: 7.35 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.99 Total: -17.68 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.49 Total: -44.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.22 -8.23 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307514989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.779 kcal (2) G-P(sol) polarization free energy of solvation -28.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds