Wall clock time and date at job start Tue Mar 31 2020 05:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47328 * 2 1 4 4 N 1.46500 * 109.46686 * 119.99429 * 2 1 3 5 5 C 1.36936 * 120.00498 * 305.35431 * 4 2 1 6 6 H 1.08007 * 119.99545 * 0.02562 * 5 4 2 7 7 C 1.38807 * 120.00300 * 179.97438 * 5 4 2 8 8 N 1.31617 * 120.00356 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00065 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47096 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47605 * 119.99711 * 9 7 5 12 12 H 1.48501 * 109.47103 * 240.00465 * 9 7 5 13 13 C 1.50695 * 109.47519 * 239.99479 * 2 1 3 14 14 C 1.38245 * 119.98963 * 84.15611 * 13 2 1 15 15 C 1.38218 * 120.00893 * 179.76819 * 14 13 2 16 16 C 1.38322 * 119.98861 * 0.50952 * 15 14 13 17 17 Br 1.89106 * 120.00793 * 179.72162 * 16 15 14 18 18 C 1.38325 * 119.98447 * 359.74704 * 16 15 14 19 19 C 1.38220 * 119.98523 * 0.02562 * 18 16 15 20 20 H 1.08999 * 109.47446 * 300.00988 * 1 2 3 21 21 H 1.09002 * 109.46326 * 60.00636 * 1 2 3 22 22 H 1.09002 * 109.47132 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47576 * 179.97438 * 3 2 1 24 24 H 1.09000 * 109.46738 * 299.99778 * 3 2 1 25 25 H 1.09000 * 109.47175 * 59.98946 * 3 2 1 26 26 H 0.97005 * 120.00109 * 125.62845 * 4 2 1 27 27 H 0.97000 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.07998 * 119.99081 * 0.02562 * 14 13 2 29 29 H 1.07996 * 120.00700 * 180.23882 * 15 14 13 30 30 H 1.07995 * 120.00669 * 179.97438 * 18 16 15 31 31 H 1.08003 * 119.99453 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0182 -0.6905 1.1963 5 6 1.5995 -0.2900 2.4370 6 1 0.9089 0.5349 2.5336 7 6 2.0617 -0.9446 3.5704 8 7 2.9029 -1.9500 3.4527 9 14 1.4899 -0.3986 5.2628 10 1 0.5531 0.7453 5.1237 11 1 0.7988 -1.5254 5.9394 12 1 2.6636 0.0192 6.0710 13 6 2.0324 -0.7105 -1.2303 14 6 2.1479 -0.0251 -2.4253 15 6 2.6132 -0.6751 -3.5529 16 6 2.9534 -2.0143 -3.4880 17 35 3.5826 -2.9061 -5.0323 18 6 2.8327 -2.7011 -2.2934 19 6 2.3717 -2.0490 -1.1652 20 1 -0.3634 0.5140 0.8899 21 1 -0.3632 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6766 1.9564 0.8899 26 1 2.6413 -1.4290 1.1097 27 1 3.2256 -2.4077 4.2447 28 1 1.8784 1.0195 -2.4768 29 1 2.7070 -0.1387 -4.4855 30 1 3.0978 -3.7467 -2.2424 31 1 2.2771 -2.5852 -0.2325 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307514989.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:03 Heat of formation + Delta-G solvation = 20.126739 kcal Electronic energy + Delta-G solvation = -14721.142438 eV Core-core repulsion = 12241.244617 eV Total energy + Delta-G solvation = -2479.897821 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74680 -37.74879 -34.54694 -32.67334 -32.18608 -30.68698 -29.45057 -27.96130 -26.13236 -23.50403 -23.42638 -20.42713 -19.26289 -17.76046 -16.78978 -16.11136 -15.89868 -15.38495 -15.18577 -14.60116 -14.54659 -14.17244 -13.84810 -13.24325 -13.15298 -12.92618 -12.73820 -12.60115 -12.16880 -12.14723 -12.09246 -11.66723 -11.56590 -11.33217 -11.20923 -10.94358 -9.94201 -9.50989 -8.96887 -7.90473 -5.17741 0.15442 0.39010 0.65334 1.48324 1.48787 1.58017 2.57586 2.69523 3.44946 3.77311 3.80274 3.97206 4.01871 4.34867 4.42377 4.53357 4.59084 4.77940 4.90368 5.00583 5.05340 5.07883 5.12380 5.24231 5.30297 5.50163 5.53245 5.62895 5.77129 5.89601 6.32475 7.38697 8.13140 8.36788 9.33945 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.038548 B = 0.004250 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.186671 B = 6586.210590 C = 7090.909714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.218 3.782 3 C -0.146 4.146 4 N -0.732 5.732 5 C -0.220 4.220 6 H 0.080 0.920 7 C -0.078 4.078 8 N -0.973 5.973 9 Si 0.965 3.035 10 H -0.265 1.265 11 H -0.298 1.298 12 H -0.298 1.298 13 C -0.061 4.061 14 C -0.108 4.108 15 C -0.087 4.087 16 C -0.105 4.105 17 Br -0.048 7.048 18 C -0.094 4.094 19 C -0.121 4.121 20 H 0.048 0.952 21 H 0.075 0.925 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.374 0.626 27 H 0.248 0.752 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.136 0.864 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.878 1.909 -19.456 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.128 3.872 3 C -0.205 4.205 4 N -0.374 5.374 5 C -0.352 4.352 6 H 0.098 0.902 7 C -0.270 4.270 8 N -0.625 5.625 9 Si 0.795 3.205 10 H -0.189 1.189 11 H -0.225 1.225 12 H -0.226 1.226 13 C -0.061 4.061 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.184 4.184 17 Br 0.037 6.963 18 C -0.114 4.114 19 C -0.140 4.140 20 H 0.068 0.932 21 H 0.093 0.907 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.208 0.792 27 H 0.057 0.943 28 H 0.175 0.825 29 H 0.175 0.825 30 H 0.154 0.846 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.746 1.678 -19.910 19.995 hybrid contribution 0.052 -0.304 1.837 1.863 sum -0.694 1.374 -18.073 18.138 Atomic orbital electron populations 1.22097 0.95219 1.00881 1.01496 1.18832 0.93187 0.91517 0.83647 1.22252 1.00270 0.96299 1.01640 1.42861 1.54273 1.39187 1.01078 1.19547 1.19838 1.11330 0.84442 0.90247 1.25451 1.01115 0.99297 1.01145 1.69814 1.38103 1.25992 1.28571 0.85185 0.77165 0.77387 0.80757 1.18887 1.22526 1.22557 1.20309 0.96352 0.93870 0.95602 1.21289 0.99441 1.01220 0.90780 1.21335 0.97278 0.92193 0.99854 1.21861 1.07447 0.96370 0.92757 1.96653 1.87407 1.78057 1.34200 1.21166 0.98534 1.00527 0.91137 1.21101 0.99515 0.95211 0.98200 0.93246 0.90651 0.94435 0.94245 0.89979 0.93635 0.79215 0.94319 0.82531 0.82506 0.84564 0.86913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 8.34 71.98 0.60 -4.16 16 2 C 0.22 8.13 0.98 2.86 0.00 8.13 16 3 C -0.15 -4.85 7.97 71.98 0.57 -4.28 16 4 N -0.73 -35.58 4.84 -306.75 -1.49 -37.06 16 5 C -0.22 -11.72 8.70 84.03 0.73 -10.99 16 6 H 0.08 4.06 6.69 -2.91 -0.02 4.04 16 7 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 8 N -0.97 -59.23 13.06 21.65 0.28 -58.95 16 9 Si 0.96 45.85 29.55 68.60 2.03 47.87 16 10 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 12 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 13 C -0.06 -2.00 4.80 -19.86 -0.10 -2.10 16 14 C -0.11 -2.78 9.15 22.27 0.20 -2.58 16 15 C -0.09 -2.03 9.79 22.28 0.22 -1.81 16 16 C -0.11 -2.72 6.22 22.31 0.14 -2.58 16 17 Br -0.05 -1.06 33.70 -20.37 -0.69 -1.74 16 18 C -0.09 -2.78 9.79 22.29 0.22 -2.56 16 19 C -0.12 -4.24 9.00 22.27 0.20 -4.04 16 20 H 0.05 1.80 6.99 -2.39 -0.02 1.78 16 21 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 22 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 23 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 2.03 6.52 -2.39 -0.02 2.02 16 25 H 0.04 1.63 7.59 -2.39 -0.02 1.61 16 26 H 0.37 19.76 5.73 -92.70 -0.53 19.22 16 27 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.16 3.15 6.35 -2.91 -0.02 3.13 16 29 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 31 H 0.11 4.59 6.49 -2.91 -0.02 4.57 16 Total: -1.00 -61.58 277.92 4.00 -57.57 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.61 Total: 23.25 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 3.26 Total: -30.94 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -1.20 Total: -96.01 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.69 Total: -1.74 kcal Total: -61.58 4.00 -57.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307514989.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.699 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds