Wall clock time and date at job start Tue Mar 31 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38241 * 119.99322 * 2 1 4 4 C 1.38310 * 119.99015 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 120.00942 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.97875 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99276 * 359.74639 * 6 4 3 8 8 C 1.38221 * 119.99906 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98618 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.47030 * 79.99675 * 9 8 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47109 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99722 * 16 14 12 19 19 H 1.48500 * 109.46790 * 239.99650 * 16 14 12 20 20 H 1.08998 * 109.47769 * 270.02583 * 1 2 3 21 21 H 1.09001 * 109.47685 * 30.02566 * 1 2 3 22 22 H 1.09002 * 109.46968 * 150.02461 * 1 2 3 23 23 H 1.08002 * 120.00610 * 359.95152 * 3 2 1 24 24 H 1.08002 * 120.00872 * 179.97438 * 6 4 3 25 25 H 1.07990 * 120.00129 * 180.27987 * 7 6 4 26 26 H 1.08996 * 109.46908 * 319.99493 * 9 8 2 27 27 H 1.09002 * 109.46622 * 199.99666 * 9 8 2 28 28 H 1.00899 * 111.00672 * 56.04735 * 10 9 8 29 29 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 30 30 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 31 31 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 -0.0002 6 6 4.2723 -0.0012 0.0016 7 6 3.5806 -1.1976 0.0074 8 6 2.1980 -1.1970 0.0005 9 6 1.4441 -2.5020 0.0005 10 7 0.9914 -2.8059 -1.3635 11 6 0.2515 -4.0744 -1.4021 12 6 -0.1964 -4.3519 -2.8141 13 1 0.0449 -3.6557 -3.6038 14 6 -0.9142 -5.4944 -3.0977 15 7 -1.2075 -6.3423 -2.1361 16 14 -1.4687 -5.8386 -4.8479 17 1 -1.0146 -4.7389 -5.7364 18 1 -0.8825 -7.1226 -5.3095 19 1 -2.9505 -5.9278 -4.8891 20 1 -0.3634 0.0005 1.0276 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6580 2.1326 -0.0008 24 1 5.3523 -0.0018 0.0016 25 1 4.1200 -2.1331 0.0128 26 1 0.5806 -2.4226 0.6608 27 1 2.0985 -3.2995 0.3524 28 1 1.7681 -2.8210 -2.0074 29 1 0.8978 -4.8827 -1.0602 30 1 -0.6204 -4.0064 -0.7515 31 1 -1.7122 -7.1463 -2.3357 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308721180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:38 Heat of formation + Delta-G solvation = 13.141750 kcal Electronic energy + Delta-G solvation = -14107.720953 eV Core-core repulsion = 11627.520240 eV Total energy + Delta-G solvation = -2480.200713 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57100 -35.52570 -33.21390 -32.40833 -31.72987 -29.71034 -27.33271 -26.44582 -24.09260 -22.05769 -21.48133 -20.33204 -16.76668 -15.99324 -15.87115 -14.92439 -14.62354 -14.26889 -13.90266 -13.20895 -13.09234 -13.04512 -12.38190 -12.32328 -11.97993 -11.67603 -11.37425 -11.04396 -10.95900 -10.73372 -10.59093 -10.55660 -10.33816 -9.95974 -9.23459 -8.78683 -8.53198 -8.41792 -7.39204 -6.07315 -4.09409 1.14979 1.36218 1.59379 3.28942 3.36485 3.41611 3.63912 4.40726 4.77795 4.90819 4.97871 5.28802 5.30105 5.32044 5.49159 5.60194 5.82523 5.85605 5.94346 6.00631 6.16158 6.23602 6.30984 6.54258 6.79218 6.92301 7.16498 7.34806 7.73290 8.06355 8.29800 8.52534 8.99978 9.55941 11.03752 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.003287 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.608003 B = 8515.400847 C = 8598.794011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.053 4.053 3 C -0.097 4.097 4 C -0.092 4.092 5 Br -0.066 7.066 6 C -0.101 4.101 7 C -0.108 4.108 8 C -0.055 4.055 9 C 0.091 3.909 10 N -0.681 5.681 11 C 0.193 3.807 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.899 3.101 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.099 0.901 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.078 0.922 27 H 0.030 0.970 28 H 0.331 0.669 29 H -0.012 1.012 30 H 0.029 0.971 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 17.028 6.892 21.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C -0.117 4.117 4 C -0.171 4.171 5 Br 0.019 6.981 6 C -0.121 4.121 7 C -0.128 4.128 8 C -0.056 4.056 9 C -0.038 4.038 10 N -0.312 5.312 11 C 0.067 3.933 12 C -0.553 4.553 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.210 1.210 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.118 0.882 23 H 0.146 0.854 24 H 0.145 0.855 25 H 0.147 0.853 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.147 0.853 29 H 0.005 0.995 30 H 0.047 0.953 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.608 17.840 6.977 21.897 hybrid contribution 0.271 -1.287 -0.779 1.528 sum 10.879 16.553 6.198 20.755 Atomic orbital electron populations 1.20945 0.90178 1.04745 1.02165 1.19810 0.96816 0.91478 0.97313 1.20978 0.91819 0.98542 1.00366 1.21653 0.94648 0.91148 1.09665 1.96653 1.75481 1.28074 1.97885 1.20977 0.99858 0.90889 1.00350 1.21106 0.93813 0.97667 1.00179 1.20115 0.93261 0.95620 0.96640 1.20918 0.97487 0.91164 0.94265 1.60726 1.28192 1.38706 1.03553 1.19600 0.92774 0.83187 0.97779 1.21206 1.34488 1.05753 0.93814 0.91856 1.24985 0.96064 0.96005 0.97485 1.69970 1.39901 1.11885 1.31957 0.86428 0.78361 0.78097 0.84454 1.19631 1.21086 1.20969 0.91554 0.91895 0.88236 0.85374 0.85458 0.85346 0.90415 0.95230 0.85251 0.99469 0.95263 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.67 9.26 36.00 0.33 -1.33 16 2 C -0.05 -0.75 5.88 -104.63 -0.62 -1.36 16 3 C -0.10 -1.26 9.44 -39.55 -0.37 -1.63 16 4 C -0.09 -1.16 6.22 -39.52 -0.25 -1.41 16 5 Br -0.07 -0.73 33.70 -68.01 -2.29 -3.02 16 6 C -0.10 -1.25 9.79 -39.56 -0.39 -1.63 16 7 C -0.11 -1.43 9.67 -39.59 -0.38 -1.82 16 8 C -0.06 -0.82 5.39 -104.62 -0.56 -1.39 16 9 C 0.09 1.54 4.94 -4.98 -0.02 1.51 16 10 N -0.68 -13.92 5.82 -116.34 -0.68 -14.60 16 11 C 0.19 4.88 5.44 -4.97 -0.03 4.85 16 12 C -0.51 -14.26 9.32 -34.44 -0.32 -14.58 16 13 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.40 13.29 55.43 0.74 -25.67 16 16 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 22 H 0.10 1.61 6.34 -51.93 -0.33 1.28 16 23 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 24 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 25 H 0.13 1.51 8.03 -52.49 -0.42 1.09 16 26 H 0.08 1.31 7.28 -51.93 -0.38 0.93 16 27 H 0.03 0.49 8.00 -51.93 -0.42 0.08 16 28 H 0.33 6.65 8.71 -39.29 -0.34 6.30 16 29 H -0.01 -0.34 8.14 -51.93 -0.42 -0.76 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 287.60 15.07 4.33 4.33 Total: -1.00 -28.70 287.60 -9.59 -38.29 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.97 Total: 1.56 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.71 Total: -17.31 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.06 Total: -40.26 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.29 Total: -3.02 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.70 -9.59 -38.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308721180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.430 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds