Wall clock time and date at job start Tue Mar 31 2020 05:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38241 * 119.99322 * 2 1 4 4 C 1.38310 * 119.99015 * 179.97438 * 3 2 1 5 5 Br 1.89100 * 120.00942 * 179.97438 * 4 3 2 6 6 C 1.38343 * 119.97875 * 359.97438 * 4 3 2 7 7 C 1.38201 * 119.99276 * 359.74639 * 6 4 3 8 8 C 1.38221 * 119.99906 * 179.97438 * 2 1 3 9 9 C 1.50704 * 119.98618 * 0.02562 * 8 2 1 10 10 N 1.46895 * 109.47030 * 79.99675 * 9 8 2 11 11 C 1.46906 * 110.99789 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47109 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99876 * 0.02562 * 12 11 10 14 14 C 1.37875 * 119.99989 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99944 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99979 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47285 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47233 * 119.99722 * 16 14 12 19 19 H 1.48500 * 109.46790 * 239.99650 * 16 14 12 20 20 H 1.08998 * 109.47769 * 270.02583 * 1 2 3 21 21 H 1.09001 * 109.47685 * 30.02566 * 1 2 3 22 22 H 1.09002 * 109.46968 * 150.02461 * 1 2 3 23 23 H 1.08002 * 120.00610 * 359.95152 * 3 2 1 24 24 H 1.08002 * 120.00872 * 179.97438 * 6 4 3 25 25 H 1.07990 * 120.00129 * 180.27987 * 7 6 4 26 26 H 1.08996 * 109.46908 * 319.99493 * 9 8 2 27 27 H 1.09002 * 109.46622 * 199.99666 * 9 8 2 28 28 H 1.00899 * 111.00672 * 56.04735 * 10 9 8 29 29 H 1.08992 * 109.47459 * 299.99826 * 11 10 9 30 30 H 1.09004 * 109.47040 * 59.99976 * 11 10 9 31 31 H 0.96997 * 119.99752 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1980 1.1973 0.0000 4 6 3.5811 1.1972 0.0005 5 35 4.5269 2.8347 -0.0002 6 6 4.2723 -0.0012 0.0016 7 6 3.5806 -1.1976 0.0074 8 6 2.1980 -1.1970 0.0005 9 6 1.4441 -2.5020 0.0005 10 7 0.9914 -2.8059 -1.3635 11 6 0.2515 -4.0744 -1.4021 12 6 -0.1964 -4.3519 -2.8141 13 1 0.0449 -3.6557 -3.6038 14 6 -0.9142 -5.4944 -3.0977 15 7 -1.2075 -6.3423 -2.1361 16 14 -1.4687 -5.8386 -4.8479 17 1 -1.0146 -4.7389 -5.7364 18 1 -0.8825 -7.1226 -5.3095 19 1 -2.9505 -5.9278 -4.8891 20 1 -0.3634 0.0005 1.0276 21 1 -0.3634 0.8897 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6580 2.1326 -0.0008 24 1 5.3523 -0.0018 0.0016 25 1 4.1200 -2.1331 0.0128 26 1 0.5806 -2.4226 0.6608 27 1 2.0985 -3.2995 0.3524 28 1 1.7681 -2.8210 -2.0074 29 1 0.8978 -4.8827 -1.0602 30 1 -0.6204 -4.0064 -0.7515 31 1 -1.7122 -7.1463 -2.3357 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308721180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:38 Heat of formation + Delta-G solvation = -3.139299 kcal Electronic energy + Delta-G solvation = -14108.426953 eV Core-core repulsion = 11627.520240 eV Total energy + Delta-G solvation = -2480.906712 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 283.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64658 -37.12833 -34.87133 -33.79433 -32.94612 -30.93239 -28.81198 -27.82467 -25.62815 -23.48174 -23.05013 -21.46151 -18.65467 -17.37675 -17.00270 -16.65248 -15.92459 -15.70085 -15.36916 -14.66658 -14.44234 -14.16284 -13.93870 -13.37871 -13.35490 -13.22665 -12.98545 -12.68063 -12.64585 -12.16812 -12.06494 -11.73073 -11.60771 -11.26686 -11.24679 -10.66292 -9.80012 -9.50361 -9.11659 -8.22128 -6.32738 0.08761 0.34598 0.62810 1.41966 1.42847 1.56437 2.40235 2.58225 3.11743 3.63696 3.77044 3.93104 3.97973 4.24216 4.31422 4.54097 4.62968 4.68345 4.84553 4.92381 4.97100 5.09213 5.21283 5.21363 5.29275 5.44447 5.60784 5.70934 5.86870 6.02287 6.41790 6.68962 6.88268 7.38227 8.89450 Molecular weight = 283.03amu Principal moments of inertia in cm(-1) A = 0.041557 B = 0.003287 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.608003 B = 8515.400847 C = 8598.794011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.062 4.062 3 C -0.099 4.099 4 C -0.096 4.096 5 Br -0.048 7.048 6 C -0.100 4.100 7 C -0.109 4.109 8 C -0.073 4.073 9 C 0.097 3.903 10 N -0.676 5.676 11 C 0.208 3.792 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.971 3.029 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.079 0.921 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.145 0.855 24 H 0.149 0.851 25 H 0.140 0.860 26 H 0.072 0.928 27 H 0.031 0.969 28 H 0.334 0.666 29 H -0.037 1.037 30 H 0.004 0.996 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.777 18.382 6.213 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.119 4.119 4 C -0.176 4.176 5 Br 0.038 6.962 6 C -0.119 4.119 7 C -0.128 4.128 8 C -0.074 4.074 9 C -0.032 4.032 10 N -0.306 5.306 11 C 0.081 3.919 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.195 4.195 15 N -0.574 5.574 16 Si 0.795 3.205 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.097 0.903 21 H 0.096 0.904 22 H 0.087 0.913 23 H 0.163 0.837 24 H 0.167 0.833 25 H 0.158 0.842 26 H 0.091 0.909 27 H 0.049 0.951 28 H 0.151 0.849 29 H -0.019 1.019 30 H 0.022 0.978 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.466 19.218 6.306 23.250 hybrid contribution 0.076 -1.617 -0.500 1.694 sum 11.542 17.601 5.805 21.834 Atomic orbital electron populations 1.20885 0.90101 1.03886 1.02787 1.19914 0.97069 0.91791 0.97619 1.21138 0.92170 0.98647 0.99899 1.21878 0.94847 0.92151 1.08694 1.96676 1.74970 1.26803 1.97788 1.21221 1.00956 0.90346 0.99417 1.21257 0.93192 0.98780 0.99611 1.19938 0.93925 0.94550 0.99000 1.20848 0.97634 0.92696 0.92008 1.60573 1.28532 1.35667 1.05862 1.19234 0.91920 0.84524 0.96256 1.21552 1.34768 1.06037 0.94767 0.91856 1.25905 0.95986 0.95720 1.01928 1.70088 1.40573 1.12434 1.34270 0.85311 0.77919 0.78150 0.79076 1.18778 1.20376 1.20415 0.90275 0.90412 0.91289 0.83740 0.83322 0.84172 0.90918 0.95080 0.84907 1.01921 0.97767 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.26 71.23 0.66 -2.51 16 2 C -0.06 -1.70 5.88 -19.87 -0.12 -1.82 16 3 C -0.10 -2.37 9.44 22.29 0.21 -2.15 16 4 C -0.10 -2.21 6.22 22.31 0.14 -2.07 16 5 Br -0.05 -0.93 33.70 -20.37 -0.69 -1.62 16 6 C -0.10 -2.24 9.79 22.29 0.22 -2.02 16 7 C -0.11 -2.73 9.67 22.27 0.22 -2.52 16 8 C -0.07 -2.13 5.39 -19.86 -0.11 -2.24 16 9 C 0.10 3.33 4.94 85.56 0.42 3.76 16 10 N -0.68 -28.20 5.82 -521.98 -3.04 -31.24 16 11 C 0.21 10.90 5.44 85.56 0.47 11.36 16 12 C -0.53 -29.99 9.32 25.60 0.24 -29.75 16 13 H 0.06 3.49 7.81 -2.91 -0.02 3.46 16 14 C 0.00 0.16 5.46 84.65 0.46 0.62 16 15 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 16 Si 0.97 43.91 29.54 68.60 2.03 45.93 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 20 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 21 H 0.08 1.77 8.09 -2.39 -0.02 1.75 16 22 H 0.07 2.26 6.34 -2.39 -0.02 2.25 16 23 H 0.14 2.91 8.06 -2.91 -0.02 2.89 16 24 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 25 H 0.14 3.10 8.03 -2.92 -0.02 3.07 16 26 H 0.07 2.54 7.28 -2.39 -0.02 2.52 16 27 H 0.03 1.05 8.00 -2.39 -0.02 1.04 16 28 H 0.33 13.54 8.71 -89.69 -0.78 12.76 16 29 H -0.04 -2.07 8.14 -2.39 -0.02 -2.09 16 30 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -60.97 287.60 1.74 -59.23 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.35 Total: 12.48 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 2.81 Total: -29.33 kcal Atomic # 7 Polarization: -83.93 SS G_CDS: -2.75 Total: -86.68 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -0.69 Total: -1.62 kcal Total: -60.97 1.74 -59.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308721180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.087 kcal (2) G-P(sol) polarization free energy of solvation -60.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds