Wall clock time and date at job start Tue Mar 31 2020 05:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39464 * 123.23158 * 23.49280 * 3 2 1 5 5 Cl 1.73597 * 121.51388 * 0.02562 * 4 3 2 6 6 N 1.29509 * 116.96735 * 180.28104 * 4 3 2 7 7 S 1.69445 * 108.07522 * 359.75292 * 6 4 3 8 8 C 1.39011 * 123.23283 * 203.31006 * 3 2 1 9 9 N 1.38189 * 127.34763 * 0.03435 * 8 3 2 10 10 C 1.46500 * 120.00245 * 174.82942 * 9 8 3 11 11 C 1.52991 * 109.47551 * 185.05532 * 10 9 8 12 12 C 1.50694 * 115.55588 * 275.76364 * 11 10 9 13 13 H 1.07997 * 120.00456 * 114.59131 * 12 11 10 14 14 C 1.37881 * 119.99721 * 294.59579 * 12 11 10 15 15 N 1.31515 * 120.00061 * 352.73762 * 14 12 11 16 16 Si 1.86805 * 119.99991 * 172.73197 * 14 12 11 17 17 H 1.48508 * 109.46833 * 90.00096 * 16 14 12 18 18 H 1.48498 * 109.47143 * 209.99753 * 16 14 12 19 19 H 1.48495 * 109.47184 * 330.00466 * 16 14 12 20 20 C 1.53004 * 117.49988 * 130.04722 * 11 10 9 21 21 C 1.53002 * 60.00194 * 252.51532 * 20 11 10 22 22 H 0.97003 * 119.99998 * 354.83664 * 9 8 3 23 23 H 1.09005 * 109.46530 * 65.05959 * 10 9 8 24 24 H 1.08998 * 109.47377 * 305.06577 * 10 9 8 25 25 H 0.97003 * 120.00121 * 185.00783 * 15 14 12 26 26 H 1.08999 * 117.49437 * 0.02562 * 20 11 10 27 27 H 1.09000 * 117.49441 * 145.02220 * 20 11 10 28 28 H 1.08995 * 117.49593 * 252.51151 * 21 20 11 29 29 H 1.08996 * 117.51516 * 107.47933 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3327 -1.0689 -0.4650 5 17 2.5927 -2.5089 -1.0915 6 7 4.6200 -0.9410 -0.4035 7 16 4.9662 0.5807 0.2567 8 6 3.3293 1.0688 0.4601 9 7 2.8693 2.2653 0.9764 10 6 3.8170 3.2408 1.5209 11 6 3.0474 4.4108 2.1368 12 6 2.6256 5.4903 1.1737 13 1 1.5769 5.6645 0.9832 14 6 3.5786 6.2556 0.5356 15 7 4.8452 6.1431 0.8714 16 14 3.0707 7.4523 -0.8059 17 1 2.7710 8.7753 -0.2015 18 1 4.1768 7.5952 -1.7865 19 1 1.8607 6.9379 -1.4960 20 6 3.4286 4.8386 3.5555 21 6 2.1106 4.1025 3.3067 22 1 1.9189 2.4592 0.9784 23 1 4.4590 3.6092 0.7208 24 1 4.4286 2.7645 2.2872 25 1 5.5062 6.7320 0.4749 26 1 4.2281 4.2867 4.0498 27 1 3.3746 5.9013 3.7922 28 1 1.1896 4.6808 3.3798 29 1 2.0425 3.0661 3.6372 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309499372.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:04 Heat of formation + Delta-G solvation = 67.289876 kcal Electronic energy + Delta-G solvation = -16917.394758 eV Core-core repulsion = 13993.182297 eV Total energy + Delta-G solvation = -2924.212461 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.024 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46902 -39.12409 -37.79667 -37.18906 -36.29084 -34.09365 -31.60596 -28.19013 -27.18408 -25.37919 -23.13853 -22.91097 -21.25842 -20.12371 -19.06539 -17.96644 -16.97183 -16.72633 -16.59480 -16.39155 -15.74010 -15.39295 -14.77371 -14.35362 -14.25940 -14.15033 -13.99568 -13.55565 -13.04016 -12.91972 -12.81877 -12.73980 -12.40191 -12.13432 -12.05864 -11.86770 -11.79252 -11.44638 -10.91748 -10.55537 -10.16246 -9.78180 -9.01459 -8.15581 -6.25305 -0.34849 -0.22699 0.01110 0.54485 1.24232 1.39735 1.46379 1.51757 1.65480 2.15318 2.31593 2.40324 3.02199 3.09931 3.49940 3.77078 3.97733 4.08957 4.44365 4.51961 4.65660 4.80779 4.96334 5.08210 5.24477 5.47688 5.54699 5.67916 5.76878 6.10193 6.32244 6.49013 6.77714 7.42803 8.90725 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.020624 B = 0.004837 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.313233 B = 5787.826342 C = 5836.559478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.306 3.694 3 C -0.257 4.257 4 C 0.252 3.748 5 Cl 0.008 6.992 6 N -0.510 5.510 7 S 0.365 5.635 8 C 0.180 3.820 9 N -0.633 5.633 10 C 0.155 3.845 11 C 0.008 3.992 12 C -0.515 4.515 13 H 0.050 0.950 14 C 0.040 3.960 15 N -0.893 5.893 16 Si 0.936 3.064 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.276 1.276 20 C -0.161 4.161 21 C -0.185 4.185 22 H 0.414 0.586 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.265 0.735 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -10.590 0.161 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.010 4.010 3 C -0.283 4.283 4 C 0.047 3.953 5 Cl 0.036 6.964 6 N -0.333 5.333 7 S 0.504 5.496 8 C -0.068 4.068 9 N -0.255 5.255 10 C 0.033 3.967 11 C 0.007 3.993 12 C -0.552 4.552 13 H 0.068 0.932 14 C -0.162 4.162 15 N -0.530 5.530 16 Si 0.763 3.237 17 H -0.207 1.207 18 H -0.208 1.208 19 H -0.201 1.201 20 C -0.199 4.199 21 C -0.222 4.222 22 H 0.252 0.748 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.394 -10.622 0.062 10.888 hybrid contribution -2.120 0.918 -0.817 2.451 sum 0.274 -9.704 -0.755 9.737 Atomic orbital electron populations 1.81229 1.12026 1.08061 1.12308 1.24404 0.91089 0.93348 0.92124 1.15112 0.86700 0.97327 1.29207 1.21173 0.88972 0.89600 0.95578 1.98423 1.79821 1.33719 1.84450 1.76010 1.14437 1.14494 1.28360 1.84516 0.98647 1.07138 1.59256 1.23482 1.02443 0.89066 0.91764 1.44621 1.11752 1.12182 1.56933 1.21422 0.90155 0.86876 0.98284 1.18969 0.98526 0.94286 0.87539 1.20662 0.92362 1.17687 1.24536 0.93198 1.25430 0.95027 0.97951 0.97794 1.69971 1.01263 1.38335 1.43406 0.85901 0.77924 0.79737 0.80166 1.20699 1.20828 1.20072 1.22709 0.97203 0.98917 1.01056 1.22925 0.94108 1.00093 1.05120 0.74771 0.90689 0.90588 0.92599 0.89500 0.91605 0.90455 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.45 18.54 19.00 0.35 -15.09 15 2 C 0.31 9.40 14.55 88.33 1.29 10.69 15 3 C -0.26 -7.24 5.76 -21.55 -0.12 -7.37 15 4 C 0.25 6.78 7.27 85.33 0.62 7.40 15 5 Cl 0.01 0.20 28.56 -2.72 -0.08 0.12 15 6 N -0.51 -13.73 12.00 -52.94 -0.64 -14.36 15 7 S 0.37 9.08 23.03 -56.49 -1.30 7.78 15 8 C 0.18 5.01 7.30 83.88 0.61 5.62 15 9 N -0.63 -19.28 5.59 -343.04 -1.92 -21.20 15 10 C 0.15 5.32 5.54 86.38 0.48 5.80 15 11 C 0.01 0.30 1.31 -52.93 -0.07 0.23 15 12 C -0.51 -24.17 8.82 25.60 0.23 -23.95 15 13 H 0.05 2.41 7.82 -2.91 -0.02 2.39 15 14 C 0.04 1.94 5.23 84.66 0.44 2.38 15 15 N -0.89 -43.75 12.58 21.45 0.27 -43.48 15 16 Si 0.94 39.43 29.55 68.60 2.03 41.45 15 17 H -0.28 -11.84 7.11 99.48 0.71 -11.14 15 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 15 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 20 C -0.16 -6.06 9.88 30.60 0.30 -5.76 15 21 C -0.19 -6.39 9.79 30.60 0.30 -6.09 15 22 H 0.41 12.98 8.14 -92.71 -0.76 12.22 15 23 H 0.07 2.95 7.25 -2.38 -0.02 2.93 15 24 H 0.08 2.31 7.91 -2.39 -0.02 2.29 15 25 H 0.26 12.58 8.32 -92.71 -0.77 11.81 15 26 H 0.09 2.93 8.06 -2.39 -0.02 2.91 15 27 H 0.07 2.73 8.14 -2.39 -0.02 2.71 15 28 H 0.08 2.74 8.14 -2.39 -0.02 2.72 15 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -49.52 298.57 3.25 -46.27 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 0.46 Total: 9.54 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 4.07 Total: -11.04 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -1.93 Total: -94.13 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 9.08 SS G_CDS: -1.30 Total: 7.78 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -0.08 Total: 0.12 kcal Total: -49.52 3.25 -46.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309499372.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.564 kcal (2) G-P(sol) polarization free energy of solvation -49.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds