Wall clock time and date at job start Tue Mar 31 2020 06:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48496 * 109.47368 * 270.00048 * 3 2 1 5 5 H 1.48502 * 109.46985 * 30.00391 * 3 2 1 6 6 H 1.48504 * 109.46597 * 150.00247 * 3 2 1 7 7 C 1.37875 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08014 * 119.99428 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47354 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47600 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47399 * 179.97438 * 11 10 9 13 13 O 1.42099 * 109.47253 * 289.05689 * 12 11 10 14 14 C 1.76203 * 102.99998 * 180.02562 * 12 11 10 15 15 C 1.38255 * 119.99814 * 90.00063 * 14 12 11 16 16 C 1.38220 * 119.99693 * 180.02562 * 15 14 12 17 17 C 1.38260 * 119.99862 * 0.26328 * 16 15 14 18 18 C 1.38209 * 120.00092 * 359.45892 * 17 16 15 19 19 N 1.48017 * 120.00211 * 180.28803 * 18 17 16 20 20 O 1.21793 * 120.00100 * 180.28009 * 19 18 17 21 21 O 1.21799 * 119.99759 * 0.26952 * 19 18 17 22 22 C 1.38216 * 120.00046 * 270.02449 * 14 12 11 23 23 H 0.96997 * 119.99942 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47697 * 60.00058 * 9 7 2 25 25 H 1.09000 * 109.47203 * 299.99742 * 9 7 2 26 26 H 1.09000 * 109.47222 * 59.99873 * 10 9 7 27 27 H 1.09004 * 109.47219 * 300.00124 * 10 9 7 28 28 H 1.09000 * 109.46759 * 59.99807 * 11 10 9 29 29 H 1.09004 * 109.47113 * 300.00406 * 11 10 9 30 30 H 1.07999 * 120.00154 * 0.02562 * 15 14 12 31 31 H 1.08002 * 119.99600 * 179.97438 * 16 15 14 32 32 H 1.07995 * 119.99349 * 179.72815 * 17 16 15 33 33 H 1.08001 * 119.99686 * 359.97146 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 16 2.6592 -6.3658 -0.0007 13 8 3.2985 -6.4417 -1.2674 14 6 1.6118 -7.7828 -0.0006 15 6 1.2005 -8.3384 -1.1979 16 6 0.3785 -9.4496 -1.1978 17 6 -0.0368 -10.0021 -0.0003 18 6 0.3790 -9.4502 1.1965 19 7 -0.0604 -10.0455 2.4785 20 8 0.3020 -9.5560 3.5332 21 8 -0.7845 -11.0249 2.4785 22 6 1.2011 -8.3385 1.1964 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8534 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8903 30 1 1.5214 -7.9042 -2.1332 31 1 0.0568 -9.8834 -2.1331 32 1 -0.6827 -10.8677 -0.0004 33 1 1.5225 -7.9045 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313549255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:19 Heat of formation + Delta-G solvation = -28.879299 kcal Electronic energy + Delta-G solvation = -18751.471707 eV Core-core repulsion = 15485.920216 eV Total energy + Delta-G solvation = -3265.551490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.41371 -39.64599 -36.80031 -35.86487 -34.55481 -32.40483 -32.12195 -31.91541 -27.62614 -26.86880 -23.97828 -23.37394 -22.79835 -20.55824 -19.82224 -18.90469 -17.76815 -17.54866 -17.10532 -16.40071 -15.90738 -15.76197 -14.92246 -14.69629 -14.53314 -14.42996 -13.55206 -12.84319 -12.68481 -12.54693 -12.34745 -12.09571 -11.80330 -11.58615 -11.42103 -11.36271 -10.96647 -10.90875 -10.79524 -10.41207 -10.14316 -9.93773 -9.90873 -9.48771 -9.19067 -8.42470 -8.39131 -6.06829 -4.10141 -0.47490 0.25224 1.01696 1.08260 1.59897 2.47584 2.89180 3.28369 3.34841 3.37827 3.68433 3.99073 4.18924 4.40657 4.42122 4.51641 4.65594 4.97170 5.20834 5.28191 5.31598 5.42385 5.47325 5.50939 5.79519 6.02939 6.15683 6.36109 6.54831 6.91915 7.39022 7.57334 7.68421 7.91555 8.32375 8.96710 9.54692 11.04353 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003250 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.266369 B = 8614.177580 C = 9122.775551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.094 4.094 11 C -0.437 4.437 12 S 1.323 4.677 13 O -0.845 6.845 14 C -0.456 4.456 15 C -0.006 4.006 16 C -0.131 4.131 17 C -0.030 4.030 18 C -0.062 4.062 19 N 0.030 4.970 20 O -0.151 6.151 21 O -0.166 6.166 22 C 0.019 3.981 23 H 0.261 0.739 24 H 0.014 0.986 25 H 0.020 0.980 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.155 0.845 33 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.004 -20.185 2.214 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.011 4.011 10 C -0.133 4.133 11 C -0.576 4.576 12 S 1.521 4.479 13 O -0.841 6.841 14 C -0.550 4.550 15 C -0.025 4.025 16 C -0.151 4.151 17 C -0.049 4.049 18 C -0.146 4.146 19 N 0.550 4.450 20 O -0.369 6.369 21 O -0.380 6.380 22 C -0.001 4.001 23 H 0.071 0.929 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.133 0.867 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.039 -19.839 1.567 20.132 hybrid contribution -1.401 0.606 -1.530 2.162 sum 1.638 -19.233 0.037 19.302 Atomic orbital electron populations 1.69959 1.06118 1.26744 1.50636 1.25031 0.94863 0.99366 0.95169 0.86572 0.79880 0.83297 0.78147 1.20686 1.21164 1.19709 1.21250 0.93147 0.90959 1.50947 0.92471 1.19087 0.93761 0.90821 0.97448 1.21353 0.99092 0.91677 1.01217 1.27795 1.11713 1.10362 1.07683 1.69836 0.86554 0.82146 1.09377 1.93101 1.63235 1.83137 1.44628 1.28452 1.13731 1.17547 0.95279 1.21705 0.89522 0.92433 0.98809 1.21357 0.98943 0.96919 0.97851 1.21209 0.95283 0.98346 0.90073 1.21254 1.08056 1.01343 0.83907 1.43582 0.98798 0.99895 1.02770 1.94557 1.58940 1.63929 1.19517 1.94540 1.33170 1.16129 1.94202 1.20780 0.89563 0.90101 0.99609 0.92920 0.96728 0.96172 0.91790 0.92720 0.89649 0.86682 0.83487 0.83328 0.82753 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.52 -14.47 9.11 -34.45 -0.31 -14.78 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.67 4.97 -27.89 -0.14 0.54 16 10 C -0.09 -1.76 5.16 -26.73 -0.14 -1.90 16 11 C -0.44 -6.21 5.88 37.16 0.22 -5.99 16 12 S 1.32 14.35 13.55 -107.50 -1.46 12.90 16 13 O -0.85 -13.83 16.90 -35.23 -0.60 -14.43 16 14 C -0.46 -4.55 5.61 -39.58 -0.22 -4.77 16 15 C -0.01 -0.06 9.44 -39.58 -0.37 -0.43 16 16 C -0.13 -1.05 10.05 -39.58 -0.40 -1.45 16 17 C -0.03 -0.26 9.56 -39.58 -0.38 -0.63 16 18 C -0.06 -0.63 6.85 -79.95 -0.55 -1.18 16 19 N 0.03 0.36 4.45 33.96 0.15 0.51 16 20 O -0.15 -1.89 18.45 -29.46 -0.54 -2.43 16 21 O -0.17 -2.09 18.45 -29.46 -0.54 -2.63 16 22 C 0.02 0.18 9.26 -39.58 -0.37 -0.19 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 29 H 0.11 1.41 8.14 -51.92 -0.42 0.98 16 30 H 0.15 1.56 7.45 -52.49 -0.39 1.17 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.36 16 32 H 0.15 1.04 7.61 -52.49 -0.40 0.64 16 33 H 0.17 1.05 7.61 -52.49 -0.40 0.65 16 LS Contribution 312.93 15.07 4.72 4.72 Total: -1.00 -35.54 312.93 -9.00 -44.54 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.69 Total: -4.36 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.76 Total: -29.28 kcal Atomic # 7 Polarization: -26.15 SS G_CDS: 0.89 Total: -25.26 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.68 Total: -19.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 14.35 SS G_CDS: -1.46 Total: 12.90 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.54 -9.00 -44.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313549255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.660 kcal (2) G-P(sol) polarization free energy of solvation -35.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds