Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48496 * 109.47368 * 270.00048 * 3 2 1 5 5 H 1.48502 * 109.46985 * 30.00391 * 3 2 1 6 6 H 1.48504 * 109.46597 * 150.00247 * 3 2 1 7 7 C 1.37875 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08014 * 119.99428 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00345 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47354 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47600 * 179.97438 * 10 9 7 12 12 S 1.81394 * 109.47399 * 179.97438 * 11 10 9 13 13 O 1.42099 * 109.47253 * 289.05689 * 12 11 10 14 14 C 1.76203 * 102.99998 * 180.02562 * 12 11 10 15 15 C 1.38255 * 119.99814 * 90.00063 * 14 12 11 16 16 C 1.38220 * 119.99693 * 180.02562 * 15 14 12 17 17 C 1.38260 * 119.99862 * 0.26328 * 16 15 14 18 18 C 1.38209 * 120.00092 * 359.45892 * 17 16 15 19 19 N 1.48017 * 120.00211 * 180.28803 * 18 17 16 20 20 O 1.21793 * 120.00100 * 180.28009 * 19 18 17 21 21 O 1.21799 * 119.99759 * 0.26952 * 19 18 17 22 22 C 1.38216 * 120.00046 * 270.02449 * 14 12 11 23 23 H 0.96997 * 119.99942 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47697 * 60.00058 * 9 7 2 25 25 H 1.09000 * 109.47203 * 299.99742 * 9 7 2 26 26 H 1.09000 * 109.47222 * 59.99873 * 10 9 7 27 27 H 1.09004 * 109.47219 * 300.00124 * 10 9 7 28 28 H 1.09000 * 109.46759 * 59.99807 * 11 10 9 29 29 H 1.09004 * 109.47113 * 300.00406 * 11 10 9 30 30 H 1.07999 * 120.00154 * 0.02562 * 15 14 12 31 31 H 1.08002 * 119.99600 * 179.97438 * 16 15 14 32 32 H 1.07995 * 119.99349 * 179.72815 * 17 16 15 33 33 H 1.08001 * 119.99686 * 359.97146 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 0.0001 12 16 2.6592 -6.3658 -0.0007 13 8 3.2985 -6.4417 -1.2674 14 6 1.6118 -7.7828 -0.0006 15 6 1.2005 -8.3384 -1.1979 16 6 0.3785 -9.4496 -1.1978 17 6 -0.0368 -10.0021 -0.0003 18 6 0.3790 -9.4502 1.1965 19 7 -0.0604 -10.0455 2.4785 20 8 0.3020 -9.5560 3.5332 21 8 -0.7845 -11.0249 2.4785 22 6 1.2011 -8.3385 1.1964 23 1 -0.4850 0.8400 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8534 -5.0451 -0.8896 29 1 0.8540 -5.0446 0.8903 30 1 1.5214 -7.9042 -2.1332 31 1 0.0568 -9.8834 -2.1331 32 1 -0.6827 -10.8677 -0.0004 33 1 1.5225 -7.9045 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313549255.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = -51.411678 kcal Electronic energy + Delta-G solvation = -18752.448784 eV Core-core repulsion = 15485.920216 eV Total energy + Delta-G solvation = -3266.528567 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.28214 -40.39436 -37.70482 -37.03973 -36.31607 -34.02956 -33.18581 -32.64622 -29.42262 -27.71531 -25.47659 -24.45749 -23.62024 -22.14530 -20.72142 -19.78725 -18.70461 -18.63846 -18.28104 -17.84592 -16.78871 -16.71431 -16.42092 -16.10276 -15.85374 -15.19071 -14.45732 -14.31186 -14.12442 -13.80954 -13.46314 -13.29887 -13.06451 -12.72394 -12.71377 -12.56319 -12.49515 -12.31363 -12.30085 -11.90828 -11.60222 -11.31854 -11.09861 -10.85482 -10.61728 -10.56788 -9.49020 -8.21175 -6.32562 -1.31537 -0.50175 0.18438 0.25264 0.69271 1.40958 1.41599 1.53153 1.57015 2.10772 2.40825 2.72257 3.12423 3.33379 3.51384 3.66901 3.80875 3.90476 4.04575 4.16034 4.38305 4.51466 4.59945 4.71571 4.80645 4.85401 5.03290 5.14630 5.20157 5.35133 5.50404 5.69751 5.83623 6.22319 6.45440 6.85241 7.37327 8.90380 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025281 B = 0.003250 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.266369 B = 8614.177580 C = 9122.775551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.089 4.089 11 C -0.448 4.448 12 S 1.410 4.590 13 O -0.898 6.898 14 C -0.468 4.468 15 C -0.019 4.019 16 C -0.123 4.123 17 C -0.022 4.022 18 C -0.077 4.077 19 N 0.031 4.969 20 O -0.163 6.163 21 O -0.182 6.182 22 C 0.028 3.972 23 H 0.263 0.737 24 H -0.021 1.021 25 H 0.005 0.995 26 H 0.092 0.908 27 H 0.040 0.960 28 H 0.065 0.935 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.180 0.820 32 H 0.174 0.826 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 -21.115 2.703 21.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.788 3.212 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.584 4.584 8 H 0.083 0.917 9 C -0.013 4.013 10 C -0.128 4.128 11 C -0.585 4.585 12 S 1.607 4.393 13 O -0.894 6.894 14 C -0.564 4.564 15 C -0.038 4.038 16 C -0.142 4.142 17 C -0.041 4.041 18 C -0.161 4.161 19 N 0.548 4.452 20 O -0.380 6.380 21 O -0.394 6.394 22 C 0.008 3.992 23 H 0.072 0.928 24 H -0.003 1.003 25 H 0.023 0.977 26 H 0.110 0.890 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.197 0.803 32 H 0.192 0.808 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.923 -20.753 2.065 21.222 hybrid contribution -1.733 0.763 -1.717 2.556 sum 2.189 -19.990 0.348 20.113 Atomic orbital electron populations 1.70094 1.07867 1.27769 1.51803 1.25996 0.95755 1.03452 0.94744 0.85462 0.78969 0.78435 0.78304 1.20318 1.20736 1.18122 1.21777 0.93832 0.92375 1.50393 0.91718 1.19025 0.94408 0.92896 0.94937 1.21146 0.98031 0.91772 1.01873 1.27856 1.12506 1.10265 1.07833 1.69264 0.83655 0.80012 1.06338 1.92983 1.65118 1.84046 1.47258 1.28134 1.14918 1.17434 0.95910 1.21859 0.90113 0.93344 0.98531 1.21637 0.97726 0.95888 0.98975 1.21536 0.94597 0.98453 0.89535 1.21431 1.09085 1.02113 0.83470 1.43802 0.98489 0.99708 1.03232 1.94546 1.59139 1.63991 1.20298 1.94532 1.33759 1.16674 1.94409 1.21036 0.88451 0.89465 1.00268 0.92819 1.00259 0.97677 0.88970 0.94166 0.91629 0.84544 0.84354 0.80291 0.80815 0.78849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 3 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.55 -30.44 9.11 25.60 0.23 -30.21 16 8 H 0.06 3.42 7.74 -2.90 -0.02 3.39 16 9 C 0.03 1.31 4.97 29.85 0.15 1.46 16 10 C -0.09 -3.34 5.16 30.59 0.16 -3.18 16 11 C -0.45 -12.53 5.88 71.98 0.42 -12.10 16 12 S 1.41 28.49 13.55 -56.49 -0.77 27.72 16 13 O -0.90 -28.76 16.90 -148.98 -2.52 -31.27 16 14 C -0.47 -8.41 5.61 22.27 0.12 -8.29 16 15 C -0.02 -0.36 9.44 22.27 0.21 -0.15 16 16 C -0.12 -1.64 10.05 22.27 0.22 -1.42 16 17 C -0.02 -0.32 9.56 22.27 0.21 -0.11 16 18 C -0.08 -1.39 6.85 36.37 0.25 -1.14 16 19 N 0.03 0.69 4.45 -46.47 -0.21 0.48 16 20 O -0.16 -3.80 18.45 18.90 0.35 -3.46 16 21 O -0.18 -4.32 18.45 18.89 0.35 -3.97 16 22 C 0.03 0.43 9.26 22.27 0.21 0.64 16 23 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 24 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 25 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.14 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.14 2.83 7.45 -2.91 -0.02 2.81 16 31 H 0.18 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.17 1.80 7.61 -2.91 -0.02 1.78 16 33 H 0.19 1.83 7.61 -2.91 -0.02 1.80 16 Total: -1.00 -78.29 312.93 3.29 -75.00 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: 1.12 Total: 0.24 kcal Atomic # 6 Polarization: -56.80 SS G_CDS: 2.65 Total: -54.14 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: 0.08 Total: -55.77 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -1.82 Total: -38.70 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 28.49 SS G_CDS: -0.77 Total: 27.72 kcal Total: -78.29 3.29 -75.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313549255.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.589 kcal (2) G-P(sol) polarization free energy of solvation -78.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds