Wall clock time and date at job start Tue Mar 31 2020 06:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47115 * 270.00322 * 3 2 1 5 5 H 1.48501 * 109.47317 * 30.00063 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00395 * 3 2 1 7 7 C 1.37882 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99953 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99659 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.46745 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46981 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.47345 * 179.97438 * 11 10 9 13 13 O 1.42102 * 109.46938 * 70.94057 * 12 11 10 14 14 C 1.76192 * 103.00134 * 180.02562 * 12 11 10 15 15 C 1.38256 * 120.00008 * 269.97912 * 14 12 11 16 16 C 1.38216 * 120.00088 * 180.02562 * 15 14 12 17 17 C 1.38259 * 119.99927 * 359.74180 * 16 15 14 18 18 C 1.38216 * 119.99705 * 0.53592 * 17 16 15 19 19 N 1.48026 * 119.99744 * 179.74440 * 18 17 16 20 20 O 1.21799 * 119.99956 * 179.72731 * 19 18 17 21 21 O 1.21802 * 120.00016 * 359.44228 * 19 18 17 22 22 C 1.38215 * 120.00241 * 90.00031 * 14 12 11 23 23 H 0.96995 * 120.00170 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.46621 * 60.00230 * 9 7 2 25 25 H 1.09002 * 109.47334 * 300.00445 * 9 7 2 26 26 H 1.08996 * 109.47498 * 60.00006 * 10 9 7 27 27 H 1.09002 * 109.47340 * 300.00162 * 10 9 7 28 28 H 1.09006 * 109.46806 * 59.99976 * 11 10 9 29 29 H 1.09002 * 109.47015 * 300.00116 * 11 10 9 30 30 H 1.08002 * 120.00190 * 359.97374 * 15 14 12 31 31 H 1.08000 * 120.00496 * 179.97438 * 16 15 14 32 32 H 1.07996 * 120.00279 * 180.26965 * 17 16 15 33 33 H 1.08005 * 119.99778 * 359.97438 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6366 -0.0022 12 16 6.1562 -4.3468 -0.0028 13 8 5.9017 -4.9387 -1.2694 14 6 7.9069 -4.1482 -0.0019 15 6 8.5944 -4.0701 -1.1989 16 6 9.9678 -3.9149 -1.1982 17 6 10.6536 -3.8323 -0.0005 18 6 9.9669 -3.9162 1.1961 19 7 10.7018 -3.8335 2.4784 20 8 10.0962 -3.9024 3.5329 21 8 11.9127 -3.7017 2.4790 22 6 8.5931 -4.0710 1.1954 23 1 -0.4850 0.8400 0.0004 24 1 3.8751 -0.6805 0.8889 25 1 3.8746 -0.6800 -0.8911 26 1 3.6578 -3.1498 -0.8924 27 1 3.6585 -3.1510 0.8875 28 1 5.9148 -2.1234 0.8882 29 1 5.9149 -2.1220 -0.8918 30 1 8.0584 -4.1312 -2.1345 31 1 10.5049 -3.8543 -2.1332 32 1 11.7262 -3.7066 0.0001 33 1 8.0560 -4.1319 2.1304 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313549256.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:21 Heat of formation + Delta-G solvation = -48.650706 kcal Electronic energy + Delta-G solvation = -18813.056694 eV Core-core repulsion = 15546.647851 eV Total energy + Delta-G solvation = -3266.408843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.27439 -40.39127 -37.69893 -37.04051 -36.34667 -34.14347 -33.18141 -32.64328 -29.90817 -27.71135 -25.25116 -24.38512 -23.60797 -22.02535 -20.72312 -19.78014 -19.00125 -18.63061 -18.39168 -17.84151 -16.78227 -16.71372 -16.35436 -16.14015 -15.74043 -15.19366 -14.84192 -14.33367 -14.12713 -13.94577 -13.46935 -13.33953 -13.17538 -12.83102 -12.71953 -12.53877 -12.34048 -12.29741 -12.20423 -11.81673 -11.54706 -11.35448 -11.20132 -10.87944 -10.77783 -10.61684 -9.48045 -8.30175 -6.34423 -1.31402 -0.49585 0.18417 0.25900 0.68483 1.34499 1.35857 1.47675 1.57973 2.11239 2.34689 2.72818 3.05374 3.33818 3.51843 3.67460 3.81265 3.90884 4.01773 4.13795 4.38869 4.52050 4.54112 4.71864 4.79520 4.81667 5.01451 5.03654 5.09515 5.35450 5.46732 5.54580 5.65546 6.27313 6.45316 6.74471 7.30391 8.86654 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.021585 B = 0.003574 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.868173 B = 7833.274394 C = 8389.306965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.240 1.240 7 C -0.536 4.536 8 H 0.035 0.965 9 C -0.010 4.010 10 C -0.087 4.087 11 C -0.450 4.450 12 S 1.402 4.598 13 O -0.900 6.900 14 C -0.466 4.466 15 C -0.019 4.019 16 C -0.123 4.123 17 C -0.023 4.023 18 C -0.077 4.077 19 N 0.031 4.969 20 O -0.162 6.162 21 O -0.183 6.183 22 C 0.028 3.972 23 H 0.266 0.734 24 H 0.034 0.966 25 H 0.007 0.993 26 H 0.036 0.964 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.179 0.821 32 H 0.173 0.827 33 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.057 -8.862 2.747 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.773 3.227 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.163 1.163 7 C -0.574 4.574 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.126 4.126 11 C -0.586 4.586 12 S 1.600 4.400 13 O -0.896 6.896 14 C -0.562 4.562 15 C -0.038 4.038 16 C -0.142 4.142 17 C -0.042 4.042 18 C -0.161 4.161 19 N 0.547 4.453 20 O -0.379 6.379 21 O -0.395 6.395 22 C 0.008 3.992 23 H 0.075 0.925 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.107 0.893 28 H 0.164 0.836 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.196 0.804 32 H 0.191 0.809 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 23.105 -9.652 2.106 25.128 hybrid contribution 0.676 2.018 -1.741 2.750 sum 23.780 -7.634 0.364 24.979 Atomic orbital electron populations 1.70068 1.08336 1.28161 1.52684 1.26041 0.95612 1.03581 0.94208 0.85670 0.79830 0.78336 0.78868 1.19974 1.20858 1.16339 1.21582 0.92354 0.93232 1.50273 0.94666 1.19560 0.93640 0.94964 0.96719 1.21018 0.91316 0.98347 1.01932 1.27853 1.02608 1.19546 1.08632 1.69339 0.78455 0.85783 1.06461 1.93000 1.80535 1.68828 1.47195 1.28111 1.20820 1.11400 0.95862 1.21856 0.95733 0.87660 0.98549 1.21628 0.93652 1.00013 0.98923 1.21532 1.02978 0.90075 0.89570 1.21431 0.93705 1.17514 0.83404 1.43823 1.01140 0.97048 1.03254 1.94548 1.69636 1.53383 1.20363 1.94537 0.96691 1.53844 1.94421 1.21035 0.90549 0.87303 1.00284 0.92512 0.94729 0.97487 0.94515 0.89335 0.83647 0.90653 0.84343 0.80372 0.80918 0.78813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 2 C 0.00 0.13 5.47 84.66 0.46 0.59 16 3 Si 0.95 43.58 27.47 68.60 1.88 45.47 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 7 C -0.54 -30.43 9.66 25.60 0.25 -30.18 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.16 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.03 5.16 30.59 0.16 -2.88 16 11 C -0.45 -10.80 5.88 71.98 0.42 -10.38 16 12 S 1.40 26.07 13.54 -56.49 -0.77 25.30 16 13 O -0.90 -27.94 16.90 -148.98 -2.52 -30.46 16 14 C -0.47 -7.48 5.61 22.27 0.12 -7.35 16 15 C -0.02 -0.31 9.44 22.27 0.21 -0.10 16 16 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 17 C -0.02 -0.29 9.56 22.27 0.21 -0.08 16 18 C -0.08 -1.25 6.85 36.37 0.25 -1.00 16 19 N 0.03 0.64 4.45 -46.46 -0.21 0.43 16 20 O -0.16 -3.57 18.45 18.89 0.35 -3.22 16 21 O -0.18 -4.14 18.45 18.88 0.35 -3.79 16 22 C 0.03 0.39 9.26 22.27 0.21 0.59 16 23 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 24 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 25 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 28 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.14 2.59 7.46 -2.91 -0.02 2.56 16 31 H 0.18 1.00 8.06 -2.91 -0.02 0.97 16 32 H 0.17 1.57 7.61 -2.91 -0.02 1.55 16 33 H 0.19 1.47 7.61 -2.91 -0.02 1.45 16 Total: -1.00 -80.11 309.34 3.10 -77.01 By element: Atomic # 1 Polarization: -0.26 SS G_CDS: 1.07 Total: 0.81 kcal Atomic # 6 Polarization: -54.97 SS G_CDS: 2.64 Total: -52.33 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.09 Total: -58.78 kcal Atomic # 8 Polarization: -35.65 SS G_CDS: -1.82 Total: -37.47 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.88 Total: 45.47 kcal Atomic # 16 Polarization: 26.07 SS G_CDS: -0.77 Total: 25.30 kcal Total: -80.11 3.10 -77.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313549256.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.360 kcal (2) G-P(sol) polarization free energy of solvation -80.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds