Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00158 * 2 1 4 4 H 1.48495 * 109.46892 * 239.99861 * 3 2 1 5 5 H 1.48497 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47188 * 120.00254 * 3 2 1 7 7 C 1.37877 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00298 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00120 * 359.97438 * 7 2 1 10 10 O 1.42106 * 106.39708 * 66.46032 * 9 7 2 11 11 O 1.42096 * 106.40422 * 293.54503 * 9 7 2 12 12 N 1.65602 * 107.22121 * 179.97438 * 9 7 2 13 13 C 1.46502 * 119.99634 * 65.00327 * 12 9 7 14 14 H 1.08998 * 109.69721 * 24.43502 * 13 12 9 15 15 C 1.53408 * 109.72865 * 263.85658 * 13 12 9 16 16 O 1.42827 * 108.39272 * 175.59360 * 15 13 12 17 17 C 1.35850 * 117.86758 * 49.14573 * 16 15 13 18 18 C 1.39153 * 118.50137 * 163.07087 * 17 16 15 19 19 C 1.37967 * 120.21035 * 179.76230 * 18 17 16 20 20 C 1.38290 * 119.96308 * 359.49720 * 19 18 17 21 21 C 1.38110 * 119.97948 * 0.58264 * 20 19 18 22 22 C 1.38371 * 121.80168 * 342.73095 * 17 16 15 23 23 C 1.50767 * 121.40524 * 0.64408 * 22 17 16 24 24 H 0.97000 * 119.99771 * 0.02562 * 1 2 3 25 25 H 0.96991 * 119.99766 * 245.00445 * 12 9 7 26 26 H 1.09002 * 109.68259 * 295.31835 * 15 13 12 27 27 H 1.08995 * 109.68061 * 55.87217 * 15 13 12 28 28 H 1.08002 * 119.89201 * 359.47520 * 18 17 16 29 29 H 1.07998 * 120.01570 * 179.72678 * 19 18 17 30 30 H 1.07995 * 120.01037 * 180.33789 * 20 19 18 31 31 H 1.07997 * 119.84076 * 179.71489 * 21 20 19 32 32 H 1.09001 * 109.43808 * 102.08672 * 23 22 17 33 33 H 1.08996 * 109.43529 * 221.96107 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1235 -2.7200 -0.0005 10 8 0.4509 -2.7949 -1.2501 11 8 0.4518 -2.7956 1.2493 12 7 2.2482 -3.9355 -0.0019 13 6 3.1401 -4.1094 1.1472 14 1 2.6771 -3.6867 2.0389 15 6 4.4768 -3.4072 0.8763 16 8 5.2838 -3.5057 2.0506 17 6 5.4174 -4.7278 2.6286 18 6 6.4557 -4.9242 3.5341 19 6 6.6210 -6.1499 4.1455 20 6 5.7468 -7.1845 3.8666 21 6 4.7162 -6.9936 2.9672 22 6 4.5493 -5.7674 2.3451 23 6 3.4155 -5.5992 1.3657 24 1 -0.4850 0.8401 -0.0004 25 1 2.3165 -4.5321 -0.7636 26 1 4.9833 -3.8914 0.0413 27 1 4.2991 -2.3581 0.6400 28 1 7.1370 -4.1159 3.7553 29 1 7.4306 -6.3001 4.8444 30 1 5.8723 -8.1425 4.3489 31 1 4.0375 -7.8044 2.7475 32 1 3.6850 -6.0614 0.4160 33 1 2.5205 -6.0794 1.7610 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328173598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -109.417492 kcal Electronic energy + Delta-G solvation = -20243.315102 eV Core-core repulsion = 16974.271214 eV Total energy + Delta-G solvation = -3269.043888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.071 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59502 -37.50855 -35.67680 -35.17827 -34.02685 -33.15010 -32.13327 -30.25916 -28.68650 -26.34889 -25.51386 -23.15319 -22.37329 -20.07423 -19.10217 -17.81221 -17.54540 -16.66268 -16.33319 -15.57654 -15.48121 -14.90564 -14.53384 -14.37401 -14.02738 -13.75211 -13.56908 -13.17809 -13.07938 -12.90609 -12.07403 -11.82126 -11.55952 -11.39165 -11.34025 -11.22200 -10.85636 -10.66786 -10.52815 -10.35820 -10.30059 -10.22225 -9.27551 -9.11482 -8.80035 -8.69578 -8.07462 -6.74840 -5.38621 1.30034 1.44038 2.21768 3.07228 3.11777 3.16883 3.42604 3.75621 4.02566 4.49721 4.60821 4.70606 4.77899 4.92624 4.97297 5.10512 5.25324 5.38576 5.47040 5.56045 5.64819 5.75597 5.82331 5.95715 6.05427 6.11977 6.29025 6.38855 6.46250 6.50500 6.69069 6.80884 7.27782 7.56191 7.75911 7.88654 8.83715 10.19581 Molecular weight = 283.07amu Principal moments of inertia in cm(-1) A = 0.025346 B = 0.005331 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.443952 B = 5251.106015 C = 6030.871791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.135 3.865 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.263 1.263 7 C -1.022 5.022 8 H 0.103 0.897 9 S 2.711 3.289 10 O -1.003 7.003 11 O -1.003 7.003 12 N -1.126 6.126 13 C 0.126 3.874 14 H 0.107 0.893 15 C 0.038 3.962 16 O -0.310 6.310 17 C 0.135 3.865 18 C -0.151 4.151 19 C -0.091 4.091 20 C -0.158 4.158 21 C -0.083 4.083 22 C -0.155 4.155 23 C -0.084 4.084 24 H 0.292 0.708 25 H 0.404 0.596 26 H 0.067 0.933 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.989 -10.563 4.536 16.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.187 1.187 7 C -1.156 5.156 8 H 0.121 0.879 9 S 2.811 3.189 10 O -0.993 6.993 11 O -0.993 6.993 12 N -0.879 5.879 13 C 0.017 3.983 14 H 0.125 0.875 15 C -0.038 4.038 16 O -0.222 6.222 17 C 0.089 3.911 18 C -0.170 4.170 19 C -0.109 4.109 20 C -0.177 4.177 21 C -0.102 4.102 22 C -0.156 4.156 23 C -0.122 4.122 24 H 0.103 0.897 25 H 0.235 0.765 26 H 0.085 0.915 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.101 0.899 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.910 -10.309 4.757 15.746 hybrid contribution 0.877 0.812 -0.487 1.290 sum 11.787 -9.498 4.271 15.728 Atomic orbital electron populations 1.69879 1.06803 1.30956 1.39620 1.24724 0.94463 1.00811 0.88399 0.86207 0.79927 0.79667 0.79874 1.18811 1.20085 1.18703 1.30550 1.05795 1.11771 1.67447 0.87893 1.00582 0.72140 0.73276 0.72924 1.93385 1.72861 1.87551 1.45538 1.93371 1.72663 1.87406 1.45892 1.56068 1.54750 1.51324 1.25807 1.21137 0.90649 0.95588 0.90950 0.87486 1.23871 0.90293 1.04646 0.85028 1.86053 1.67530 1.26614 1.42047 1.18849 0.93524 0.84731 0.94005 1.20597 0.98076 0.98458 0.99875 1.20887 0.98903 0.92351 0.98792 1.20966 0.96805 0.99382 1.00499 1.20895 0.97685 0.95883 0.95697 1.19864 0.98363 0.94675 1.02719 1.20824 0.96605 0.96586 0.98225 0.89734 0.76498 0.91512 0.85569 0.85299 0.85698 0.86114 0.85857 0.89942 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.36 13.19 55.43 0.73 -23.63 16 2 C 0.13 3.66 5.46 -17.82 -0.10 3.56 16 3 Si 0.92 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -1.02 -26.95 9.61 30.60 0.29 -26.65 16 8 H 0.10 2.41 5.62 -52.48 -0.30 2.11 16 9 S 2.71 69.32 5.00 -107.50 -0.54 68.78 16 10 O -1.00 -28.52 18.02 -57.17 -1.03 -29.55 16 11 O -1.00 -28.71 17.37 -57.17 -0.99 -29.71 16 12 N -1.13 -20.96 5.49 -4.68 -0.03 -20.99 16 13 C 0.13 2.14 3.02 -67.68 -0.20 1.94 16 14 H 0.11 2.06 7.52 -51.93 -0.39 1.67 16 15 C 0.04 0.61 6.65 37.37 0.25 0.86 16 16 O -0.31 -5.06 10.27 -19.27 -0.20 -5.25 16 17 C 0.13 1.99 6.47 -39.19 -0.25 1.74 16 18 C -0.15 -1.91 9.94 -39.34 -0.39 -2.30 16 19 C -0.09 -0.97 10.04 -39.66 -0.40 -1.36 16 20 C -0.16 -1.65 10.05 -39.61 -0.40 -2.05 16 21 C -0.08 -0.97 9.67 -39.53 -0.38 -1.35 16 22 C -0.15 -2.12 5.75 -104.44 -0.60 -2.72 16 23 C -0.08 -1.15 5.41 -27.82 -0.15 -1.30 16 24 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 25 H 0.40 6.27 8.82 -34.47 -0.30 5.97 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.13 2.14 5.81 -51.93 -0.30 1.83 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 294.98 15.07 4.45 4.45 Total: -1.00 -34.34 294.98 -8.35 -42.69 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -3.38 Total: 7.72 kcal Atomic # 6 Polarization: -27.31 SS G_CDS: -2.33 Total: -29.65 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.71 Total: -44.62 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -2.22 Total: -64.51 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 69.32 SS G_CDS: -0.54 Total: 68.78 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.34 -8.35 -42.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328173598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.731 kcal (2) G-P(sol) polarization free energy of solvation -34.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds