Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99537 * 2 1 4 4 H 1.48501 * 109.47279 * 269.99838 * 3 2 1 5 5 H 1.48496 * 109.47250 * 30.00376 * 3 2 1 6 6 H 1.48502 * 109.46978 * 150.00260 * 3 2 1 7 7 C 1.37873 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00387 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00472 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99733 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00566 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.63549 * 334.73771 * 13 11 10 15 15 S 1.81472 * 109.55818 * 94.99441 * 13 11 10 16 16 C 1.81919 * 101.37093 * 165.54096 * 15 13 11 17 17 C 1.52441 * 108.26879 * 295.13311 * 16 15 13 18 18 C 1.51378 * 111.71468 * 52.20545 * 17 16 15 19 19 S 1.76891 * 121.93559 * 159.99648 * 18 17 16 20 20 C 1.75446 * 91.28666 * 179.43102 * 19 18 17 21 21 C 1.32419 * 109.45482 * 0.22442 * 20 19 18 22 22 C 1.33947 * 128.50707 * 340.03721 * 18 17 16 23 23 H 0.96997 * 120.00287 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47767 * 59.99113 * 9 7 2 25 25 H 1.09010 * 109.46616 * 299.99671 * 9 7 2 26 26 H 0.96998 * 120.00076 * 359.97438 * 10 9 7 27 27 H 1.09001 * 109.70300 * 54.83119 * 16 15 13 28 28 H 1.09003 * 109.70072 * 175.39860 * 16 15 13 29 29 H 1.09007 * 109.02849 * 172.77589 * 17 16 15 30 30 H 1.08996 * 109.03328 * 291.69650 * 17 16 15 31 31 H 1.07993 * 125.26774 * 180.19929 * 20 19 18 32 32 H 1.08000 * 122.03626 * 180.20237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7540 -4.8833 -0.0019 12 8 0.5616 -5.1049 -0.0019 13 6 2.7333 -6.0287 -0.0010 14 1 3.6774 -5.7038 -0.4383 15 16 3.0134 -6.5872 1.7027 16 6 3.8279 -8.1901 1.4254 17 6 2.8319 -9.1204 0.7426 18 6 2.2267 -8.4849 -0.4909 19 16 1.4639 -9.4498 -1.7622 20 6 1.0768 -8.0059 -2.6806 21 6 1.5161 -6.9390 -2.0310 22 6 2.1654 -7.1868 -0.8155 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8918 25 1 0.6242 -2.5574 0.8881 26 1 3.1568 -3.4353 -0.0010 27 1 4.7005 -8.0533 0.7867 28 1 4.1348 -8.6164 2.3805 29 1 3.3433 -10.0389 0.4546 30 1 2.0338 -9.3632 1.4440 31 1 0.5606 -7.9900 -3.6291 32 1 1.3818 -5.9387 -2.4153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334537332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -8.152516 kcal Electronic energy + Delta-G solvation = -17350.718375 eV Core-core repulsion = 14528.818537 eV Total energy + Delta-G solvation = -2821.899838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.46518 -37.76740 -34.25463 -34.05964 -32.40982 -30.76436 -28.09500 -26.93125 -24.23323 -22.48608 -22.39543 -20.00410 -18.39522 -17.91159 -16.94678 -16.28670 -15.82401 -15.62701 -15.25449 -14.65018 -14.13386 -14.05293 -13.74180 -13.40445 -13.21498 -12.80985 -12.74646 -12.01772 -11.97311 -11.87912 -11.70421 -11.32986 -11.00370 -10.89419 -10.83638 -10.33047 -10.02629 -9.42311 -9.23993 -8.76086 -8.62338 -8.34114 -7.95212 -7.72284 -6.17812 -4.24984 0.94003 1.36120 1.54972 1.90925 2.27893 2.66765 3.24088 3.30383 3.32950 3.49488 3.94111 4.34775 4.37305 4.56939 4.71354 4.92236 5.03903 5.17770 5.18723 5.25395 5.35176 5.45212 5.56538 5.76435 5.99538 6.24657 6.43476 7.25012 7.34326 7.47805 7.63032 7.93962 8.53276 8.73088 8.98967 9.41374 10.92375 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.004229 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.898615 B = 6620.060687 C = 7295.464945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.702 5.702 11 C 0.521 3.479 12 O -0.529 6.529 13 C -0.023 4.023 14 H 0.115 0.885 15 S -0.198 6.198 16 C -0.088 4.088 17 C -0.047 4.047 18 C -0.166 4.166 19 S 0.077 5.923 20 C -0.209 4.209 21 C -0.104 4.104 22 C -0.076 4.076 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.029 0.971 26 H 0.392 0.608 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.167 0.833 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.620 -18.894 -1.769 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.350 5.350 11 C 0.301 3.699 12 O -0.406 6.406 13 C -0.157 4.157 14 H 0.133 0.867 15 S 0.031 5.969 16 C -0.237 4.237 17 C -0.088 4.088 18 C -0.284 4.284 19 S 0.342 5.658 20 C -0.343 4.343 21 C -0.134 4.134 22 C -0.090 4.090 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.225 0.775 27 H 0.108 0.892 28 H 0.135 0.865 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.184 0.816 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.052 -19.928 -1.041 21.164 hybrid contribution 1.283 2.019 -1.064 2.618 sum 8.335 -17.909 -2.106 19.865 Atomic orbital electron populations 1.69973 1.06122 1.27361 1.48799 1.24942 0.94905 0.99449 0.94630 0.86407 0.79669 0.82591 0.78217 1.20462 1.20979 1.19676 1.21202 0.93309 0.90313 1.53364 0.91800 1.19163 0.88197 0.81695 0.97911 1.46455 1.11416 1.05559 1.71613 1.19286 0.88485 0.83350 0.78735 1.90702 1.15812 1.84306 1.49776 1.22316 1.02178 0.95498 0.95697 0.86694 1.87342 1.78301 1.23315 1.07980 1.23376 1.00003 0.95441 1.04930 1.20248 0.98347 0.97523 0.92687 1.24335 1.07595 0.95492 1.00943 1.84119 1.57537 1.10365 1.13810 1.25079 1.09155 0.94990 1.05106 1.20176 0.98749 1.00432 0.94083 1.18954 1.02224 0.91725 0.96118 0.92410 0.95358 0.95299 0.77466 0.89182 0.86504 0.89665 0.88910 0.81590 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 8 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 9 C 0.25 6.62 5.43 -5.20 -0.03 6.60 16 10 N -0.70 -14.87 5.55 -61.48 -0.34 -15.22 16 11 C 0.52 10.62 6.07 -10.99 -0.07 10.56 16 12 O -0.53 -12.92 15.87 5.56 0.09 -12.83 16 13 C -0.02 -0.35 3.21 -28.12 -0.09 -0.44 16 14 H 0.12 1.52 8.12 -51.93 -0.42 1.10 16 15 S -0.20 -2.87 21.63 -107.50 -2.33 -5.19 16 16 C -0.09 -0.83 6.52 36.87 0.24 -0.59 16 17 C -0.05 -0.46 5.90 -27.84 -0.16 -0.63 16 18 C -0.17 -2.14 6.28 -35.48 -0.22 -2.36 16 19 S 0.08 0.89 23.25 -107.50 -2.50 -1.61 16 20 C -0.21 -2.68 11.18 28.81 0.32 -2.36 16 21 C -0.10 -1.58 8.72 -40.84 -0.36 -1.93 16 22 C -0.08 -1.15 5.11 -104.55 -0.53 -1.69 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.03 0.85 8.14 -51.92 -0.42 0.43 16 26 H 0.39 7.17 8.30 -40.82 -0.34 6.83 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.17 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.14 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 300.46 15.07 4.53 4.53 Total: -1.00 -32.31 300.46 -9.80 -42.12 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.65 Total: 3.89 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -1.32 Total: -6.16 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.40 Total: -40.50 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.83 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -4.82 Total: -6.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.31 -9.80 -42.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.964 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds