Wall clock time and date at job start Tue Mar 31 2020 05:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99537 * 2 1 4 4 H 1.48501 * 109.47279 * 269.99838 * 3 2 1 5 5 H 1.48496 * 109.47250 * 30.00376 * 3 2 1 6 6 H 1.48502 * 109.46978 * 150.00260 * 3 2 1 7 7 C 1.37873 * 120.00058 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00387 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47513 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00472 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99733 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00566 * 180.02562 * 11 10 9 14 14 H 1.08999 * 109.63549 * 334.73771 * 13 11 10 15 15 S 1.81472 * 109.55818 * 94.99441 * 13 11 10 16 16 C 1.81919 * 101.37093 * 165.54096 * 15 13 11 17 17 C 1.52441 * 108.26879 * 295.13311 * 16 15 13 18 18 C 1.51378 * 111.71468 * 52.20545 * 17 16 15 19 19 S 1.76891 * 121.93559 * 159.99648 * 18 17 16 20 20 C 1.75446 * 91.28666 * 179.43102 * 19 18 17 21 21 C 1.32419 * 109.45482 * 0.22442 * 20 19 18 22 22 C 1.33947 * 128.50707 * 340.03721 * 18 17 16 23 23 H 0.96997 * 120.00287 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47767 * 59.99113 * 9 7 2 25 25 H 1.09010 * 109.46616 * 299.99671 * 9 7 2 26 26 H 0.96998 * 120.00076 * 359.97438 * 10 9 7 27 27 H 1.09001 * 109.70300 * 54.83119 * 16 15 13 28 28 H 1.09003 * 109.70072 * 175.39860 * 16 15 13 29 29 H 1.09007 * 109.02849 * 172.77589 * 17 16 15 30 30 H 1.08996 * 109.03328 * 291.69650 * 17 16 15 31 31 H 1.07993 * 125.26774 * 180.19929 * 20 19 18 32 32 H 1.08000 * 122.03626 * 180.20237 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0017 10 7 2.2032 -3.6126 -0.0015 11 6 1.7540 -4.8833 -0.0019 12 8 0.5616 -5.1049 -0.0019 13 6 2.7333 -6.0287 -0.0010 14 1 3.6774 -5.7038 -0.4383 15 16 3.0134 -6.5872 1.7027 16 6 3.8279 -8.1901 1.4254 17 6 2.8319 -9.1204 0.7426 18 6 2.2267 -8.4849 -0.4909 19 16 1.4639 -9.4498 -1.7622 20 6 1.0768 -8.0059 -2.6806 21 6 1.5161 -6.9390 -2.0310 22 6 2.1654 -7.1868 -0.8155 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5563 -0.8918 25 1 0.6242 -2.5574 0.8881 26 1 3.1568 -3.4353 -0.0010 27 1 4.7005 -8.0533 0.7867 28 1 4.1348 -8.6164 2.3805 29 1 3.3433 -10.0389 0.4546 30 1 2.0338 -9.3632 1.4440 31 1 0.5606 -7.9900 -3.6291 32 1 1.3818 -5.9387 -2.4153 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334537332.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:49 Heat of formation + Delta-G solvation = -29.703003 kcal Electronic energy + Delta-G solvation = -17351.652874 eV Core-core repulsion = 14528.818537 eV Total energy + Delta-G solvation = -2822.834338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97378 -39.03770 -36.20336 -34.93321 -34.42918 -32.09731 -29.48296 -28.51782 -25.49129 -24.28717 -23.38412 -21.71604 -19.63160 -19.18802 -18.43147 -17.62634 -17.34668 -17.14869 -16.68025 -16.14638 -15.61567 -15.28237 -14.92003 -14.67945 -14.38969 -14.14019 -14.02701 -13.82611 -13.79744 -12.94530 -12.86579 -12.73377 -12.59778 -12.42402 -12.24222 -11.85191 -11.51603 -11.11080 -10.85914 -10.82480 -9.93378 -9.62764 -9.30857 -8.84439 -8.30647 -6.47642 -0.08712 0.23490 0.57931 0.88866 1.33751 1.42651 1.45292 1.51795 1.56905 1.91591 2.27604 2.48047 3.04428 3.35982 3.63238 3.81249 3.89218 4.01918 4.16106 4.31251 4.38242 4.68128 4.72606 4.90060 4.96551 5.05171 5.19044 5.21759 5.37486 5.41804 5.61484 5.80685 6.61011 6.76428 7.18869 7.34353 8.81632 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.004229 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.898615 B = 6620.060687 C = 7295.464945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.698 5.698 11 C 0.521 3.479 12 O -0.576 6.576 13 C -0.008 4.008 14 H 0.137 0.863 15 S -0.251 6.251 16 C -0.066 4.066 17 C -0.051 4.051 18 C -0.166 4.166 19 S 0.137 5.863 20 C -0.214 4.214 21 C -0.134 4.134 22 C -0.110 4.110 23 H 0.269 0.731 24 H -0.009 1.009 25 H -0.013 1.013 26 H 0.408 0.592 27 H 0.109 0.891 28 H 0.149 0.851 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.185 0.815 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.264 -20.793 -1.613 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.808 3.192 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.147 3.853 10 N -0.348 5.348 11 C 0.305 3.695 12 O -0.456 6.456 13 C -0.142 4.142 14 H 0.155 0.845 15 S -0.024 6.024 16 C -0.215 4.215 17 C -0.091 4.091 18 C -0.284 4.284 19 S 0.402 5.598 20 C -0.349 4.349 21 C -0.166 4.166 22 C -0.123 4.123 23 H 0.078 0.922 24 H 0.009 0.991 25 H 0.005 0.995 26 H 0.244 0.756 27 H 0.127 0.873 28 H 0.166 0.834 29 H 0.141 0.859 30 H 0.114 0.886 31 H 0.203 0.797 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 9.746 -21.860 -0.890 23.951 hybrid contribution 0.404 2.423 -1.119 2.699 sum 10.150 -19.438 -2.009 22.020 Atomic orbital electron populations 1.70137 1.08293 1.28631 1.49851 1.26057 0.95761 1.03875 0.93719 0.85148 0.78500 0.76872 0.78660 1.19474 1.20905 1.17919 1.21585 0.94313 0.90415 1.53116 0.89795 1.18581 0.88516 0.83992 0.94224 1.46178 1.11409 1.05111 1.72096 1.20099 0.88854 0.83997 0.76524 1.90660 1.18369 1.85111 1.51475 1.22050 1.01295 0.93747 0.97060 0.84522 1.87487 1.79489 1.28023 1.07352 1.23573 0.99694 0.91289 1.06975 1.20443 0.98758 0.98588 0.91331 1.24848 1.06374 0.95080 1.02127 1.83881 1.55871 1.08090 1.11970 1.25410 1.08174 0.95517 1.05839 1.20135 1.01029 1.00055 0.95336 1.18957 1.04426 0.92515 0.96450 0.92195 0.99068 0.99498 0.75576 0.87283 0.83367 0.85856 0.88646 0.79746 0.86783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.01 0.31 5.46 84.65 0.46 0.78 16 3 Si 0.99 42.65 29.54 68.60 2.03 44.68 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.56 -30.72 9.28 25.60 0.24 -30.48 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 15.15 5.43 85.63 0.46 15.62 16 10 N -0.70 -31.05 5.55 -466.81 -2.59 -33.63 16 11 C 0.52 22.39 6.07 87.66 0.53 22.92 16 12 O -0.58 -30.10 15.87 -3.04 -0.05 -30.15 16 13 C -0.01 -0.25 3.21 29.70 0.10 -0.15 16 14 H 0.14 3.55 8.12 -2.39 -0.02 3.53 16 15 S -0.25 -7.03 21.63 -56.49 -1.22 -8.25 16 16 C -0.07 -1.00 6.52 71.80 0.47 -0.54 16 17 C -0.05 -0.79 5.90 29.88 0.18 -0.62 16 18 C -0.17 -3.90 6.28 24.92 0.16 -3.74 16 19 S 0.14 2.77 23.25 -56.49 -1.31 1.45 16 20 C -0.21 -5.37 11.18 66.71 0.75 -4.62 16 21 C -0.13 -4.22 8.72 21.59 0.19 -4.03 16 22 C -0.11 -3.28 5.11 -19.82 -0.10 -3.38 16 23 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 25 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 16 26 H 0.41 15.24 8.30 -92.71 -0.77 14.47 16 27 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.15 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.12 1.08 8.14 -2.38 -0.02 1.07 16 30 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 32 H 0.11 4.05 7.63 -2.91 -0.02 4.03 16 Total: -1.00 -74.85 300.46 0.94 -73.91 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.38 Total: 16.66 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: 3.43 Total: -8.25 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.30 Total: -90.04 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -4.27 SS G_CDS: -2.54 Total: -6.80 kcal Total: -74.85 0.94 -73.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537332.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.210 kcal (2) G-P(sol) polarization free energy of solvation -74.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds