Wall clock time and date at job start Tue Mar 31 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00431 * 2 1 4 4 H 1.48499 * 109.47247 * 270.00154 * 3 2 1 5 5 H 1.48497 * 109.47048 * 30.00193 * 3 2 1 6 6 H 1.48496 * 109.47001 * 149.99773 * 3 2 1 7 7 C 1.37882 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99838 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00098 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00166 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99270 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00219 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.55861 * 30.00116 * 13 11 10 15 15 S 1.81477 * 109.55655 * 269.79079 * 13 11 10 16 16 C 1.81925 * 101.35172 * 194.33371 * 15 13 11 17 17 C 1.52435 * 108.27958 * 64.91397 * 16 15 13 18 18 C 1.51382 * 111.73435 * 307.92945 * 17 16 15 19 19 S 1.76881 * 121.93138 * 199.59082 * 18 17 16 20 20 C 1.75448 * 91.29054 * 180.57529 * 19 18 17 21 21 C 1.32415 * 109.45679 * 359.76755 * 20 19 18 22 22 C 1.33957 * 128.51562 * 19.57334 * 18 17 16 23 23 H 0.97000 * 119.99557 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47111 * 59.99325 * 9 7 2 25 25 H 1.09002 * 109.46385 * 299.99484 * 9 7 2 26 26 H 0.97006 * 120.00358 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.70109 * 184.61104 * 16 15 13 28 28 H 1.09000 * 109.70176 * 305.21353 * 16 15 13 29 29 H 1.09003 * 109.02784 * 68.50646 * 17 16 15 30 30 H 1.08997 * 109.03433 * 187.42520 * 17 16 15 31 31 H 1.08005 * 125.27085 * 179.72514 * 20 19 18 32 32 H 1.08002 * 122.03931 * 179.84375 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8219 -0.0001 12 8 6.1129 -1.9000 0.0004 13 6 5.8270 -4.2427 0.0003 14 1 5.1099 -4.8834 -0.5129 15 16 6.0355 -4.8127 1.7106 16 6 7.0337 -6.3143 1.4684 17 6 8.3876 -5.9022 0.9020 18 6 8.2394 -5.0221 -0.3207 19 16 9.5566 -4.8029 -1.4808 20 6 8.5756 -3.7181 -2.4498 21 6 7.3816 -3.5867 -1.8927 22 6 7.1741 -4.3107 -0.7123 23 1 -0.4849 0.8401 0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8751 -0.6799 -0.8895 26 1 3.3693 -3.3128 -0.0001 27 1 7.1735 -6.8206 2.4235 28 1 6.5302 -6.9813 0.7686 29 1 8.9418 -5.3578 1.6666 30 1 8.9459 -6.7975 0.6285 31 1 8.8962 -3.2322 -3.3596 32 1 6.6145 -2.9597 -2.3226 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334537333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:53 Heat of formation + Delta-G solvation = -4.238289 kcal Electronic energy + Delta-G solvation = -17408.706321 eV Core-core repulsion = 14586.976217 eV Total energy + Delta-G solvation = -2821.730105 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.59505 -37.86850 -34.38127 -34.10844 -32.43542 -30.91284 -28.33842 -27.37143 -24.26247 -22.44921 -22.09642 -20.17598 -18.44786 -17.99220 -17.12211 -16.34852 -16.04928 -15.79489 -15.33038 -14.58679 -14.29126 -14.05291 -13.79779 -13.45286 -13.28200 -12.96990 -12.80317 -12.37806 -12.21813 -11.99268 -11.76299 -11.43174 -11.05983 -10.88595 -10.78400 -10.08896 -9.99161 -9.53008 -9.40008 -8.80155 -8.67958 -8.39647 -8.22852 -7.78293 -6.22741 -4.25303 0.88615 1.29651 1.49515 1.86084 2.21667 2.61009 3.25271 3.32597 3.35600 3.41345 3.80972 4.31800 4.32172 4.50780 4.65380 4.87436 4.99463 5.12084 5.13398 5.19422 5.28236 5.36593 5.51704 5.71320 5.94230 6.19417 6.37833 6.74785 7.02591 7.12658 7.33964 8.06680 8.43977 8.69848 8.81972 9.36698 10.89159 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.004589 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.380375 B = 6100.537207 C = 6823.663593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.081 0.919 9 C 0.221 3.779 10 N -0.695 5.695 11 C 0.523 3.477 12 O -0.531 6.531 13 C -0.023 4.023 14 H 0.118 0.882 15 S -0.197 6.197 16 C -0.087 4.087 17 C -0.048 4.048 18 C -0.165 4.165 19 S 0.079 5.921 20 C -0.210 4.210 21 C -0.102 4.102 22 C -0.078 4.078 23 H 0.268 0.732 24 H 0.027 0.973 25 H 0.022 0.978 26 H 0.399 0.601 27 H 0.118 0.882 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.166 0.834 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 -14.465 -1.400 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.099 0.901 9 C 0.100 3.900 10 N -0.343 5.343 11 C 0.304 3.696 12 O -0.409 6.409 13 C -0.157 4.157 14 H 0.136 0.864 15 S 0.031 5.969 16 C -0.237 4.237 17 C -0.089 4.089 18 C -0.283 4.283 19 S 0.343 5.657 20 C -0.344 4.344 21 C -0.133 4.133 22 C -0.092 4.092 23 H 0.078 0.922 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.233 0.767 27 H 0.136 0.864 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 18.511 -13.736 -0.582 23.058 hybrid contribution -1.022 0.682 -1.154 1.686 sum 17.489 -13.054 -1.736 21.892 Atomic orbital electron populations 1.69876 1.06198 1.27446 1.49293 1.24775 0.94776 0.99105 0.93825 0.86840 0.80651 0.83317 0.79049 1.19838 1.20820 1.18479 1.21066 0.88340 0.95312 1.53473 0.90125 1.19548 0.95412 0.78136 0.96945 1.46162 1.05039 1.11457 1.71671 1.19332 0.83577 0.88321 0.78379 1.90692 1.55400 1.44842 1.49954 1.22271 0.96765 1.00065 0.96576 0.86410 1.87364 1.69941 1.31217 1.08361 1.23383 0.96995 0.97746 1.05576 1.20255 0.97301 0.97935 0.93361 1.24346 0.96528 1.05842 1.01570 1.84139 1.17310 1.46127 1.18101 1.25079 0.97729 1.06235 1.05406 1.20159 0.98183 0.99910 0.95000 1.18941 0.94063 0.99481 0.96677 0.92222 0.95476 0.95983 0.76715 0.86429 0.89078 0.88906 0.89603 0.81611 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.54 -14.85 9.83 -34.44 -0.34 -15.19 16 8 H 0.08 2.29 7.84 -52.49 -0.41 1.87 16 9 C 0.22 5.43 4.50 -5.19 -0.02 5.41 16 10 N -0.69 -14.16 5.55 -61.47 -0.34 -14.50 16 11 C 0.52 10.14 6.20 -10.99 -0.07 10.07 16 12 O -0.53 -12.18 15.55 5.55 0.09 -12.09 16 13 C -0.02 -0.34 3.21 -28.12 -0.09 -0.43 16 14 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 15 S -0.20 -2.75 21.63 -107.50 -2.33 -5.07 16 16 C -0.09 -0.79 6.52 36.87 0.24 -0.55 16 17 C -0.05 -0.45 5.90 -27.84 -0.16 -0.61 16 18 C -0.17 -2.04 6.28 -35.48 -0.22 -2.26 16 19 S 0.08 0.87 23.25 -107.50 -2.50 -1.63 16 20 C -0.21 -2.58 11.18 28.81 0.32 -2.25 16 21 C -0.10 -1.48 8.59 -40.84 -0.35 -1.83 16 22 C -0.08 -1.13 5.12 -104.54 -0.54 -1.66 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.03 0.71 7.20 -51.93 -0.37 0.34 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.40 7.21 8.32 -40.82 -0.34 6.87 16 27 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.17 1.63 8.06 -52.48 -0.42 1.21 16 32 H 0.14 2.16 7.55 -52.49 -0.40 1.77 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -32.24 296.52 -9.45 -41.70 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -3.62 Total: 3.17 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.33 Total: -7.18 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.43 Total: -40.09 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -4.82 Total: -6.71 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.24 -9.45 -41.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.459 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds