Wall clock time and date at job start Tue Mar 31 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00431 * 2 1 4 4 H 1.48499 * 109.47247 * 270.00154 * 3 2 1 5 5 H 1.48497 * 109.47048 * 30.00193 * 3 2 1 6 6 H 1.48496 * 109.47001 * 149.99773 * 3 2 1 7 7 C 1.37882 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99838 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00098 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00166 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99270 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00219 * 179.97438 * 11 10 9 14 14 H 1.09002 * 109.55861 * 30.00116 * 13 11 10 15 15 S 1.81477 * 109.55655 * 269.79079 * 13 11 10 16 16 C 1.81925 * 101.35172 * 194.33371 * 15 13 11 17 17 C 1.52435 * 108.27958 * 64.91397 * 16 15 13 18 18 C 1.51382 * 111.73435 * 307.92945 * 17 16 15 19 19 S 1.76881 * 121.93138 * 199.59082 * 18 17 16 20 20 C 1.75448 * 91.29054 * 180.57529 * 19 18 17 21 21 C 1.32415 * 109.45679 * 359.76755 * 20 19 18 22 22 C 1.33957 * 128.51562 * 19.57334 * 18 17 16 23 23 H 0.97000 * 119.99557 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47111 * 59.99325 * 9 7 2 25 25 H 1.09002 * 109.46385 * 299.99484 * 9 7 2 26 26 H 0.97006 * 120.00358 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.70109 * 184.61104 * 16 15 13 28 28 H 1.09000 * 109.70176 * 305.21353 * 16 15 13 29 29 H 1.09003 * 109.02784 * 68.50646 * 17 16 15 30 30 H 1.08997 * 109.03433 * 187.42520 * 17 16 15 31 31 H 1.08005 * 125.27085 * 179.72514 * 20 19 18 32 32 H 1.08002 * 122.03931 * 179.84375 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1943 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8219 -0.0001 12 8 6.1129 -1.9000 0.0004 13 6 5.8270 -4.2427 0.0003 14 1 5.1099 -4.8834 -0.5129 15 16 6.0355 -4.8127 1.7106 16 6 7.0337 -6.3143 1.4684 17 6 8.3876 -5.9022 0.9020 18 6 8.2394 -5.0221 -0.3207 19 16 9.5566 -4.8029 -1.4808 20 6 8.5756 -3.7181 -2.4498 21 6 7.3816 -3.5867 -1.8927 22 6 7.1741 -4.3107 -0.7123 23 1 -0.4849 0.8401 0.0004 24 1 3.8745 -0.6809 0.8905 25 1 3.8751 -0.6799 -0.8895 26 1 3.3693 -3.3128 -0.0001 27 1 7.1735 -6.8206 2.4235 28 1 6.5302 -6.9813 0.7686 29 1 8.9418 -5.3578 1.6666 30 1 8.9459 -6.7975 0.6285 31 1 8.8962 -3.2322 -3.3596 32 1 6.6145 -2.9597 -2.3226 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334537333.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:53 Heat of formation + Delta-G solvation = -25.676745 kcal Electronic energy + Delta-G solvation = -17409.635963 eV Core-core repulsion = 14586.976217 eV Total energy + Delta-G solvation = -2822.659746 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 283.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01955 -39.04562 -36.22496 -34.92990 -34.47699 -32.20946 -29.88492 -28.64399 -25.36690 -23.92566 -23.37288 -21.79474 -19.66612 -19.25568 -18.59482 -17.73063 -17.38674 -17.20186 -16.63689 -16.09034 -15.70124 -15.33468 -14.92766 -14.70351 -14.61808 -14.29899 -14.09309 -13.94288 -13.80471 -13.08356 -12.86574 -12.74522 -12.58901 -12.42864 -11.96395 -11.83719 -11.69084 -11.14256 -10.93890 -10.89415 -10.04288 -9.61937 -9.30476 -8.84932 -8.41656 -6.48940 -0.08188 0.22792 0.58280 0.90379 1.30768 1.32478 1.33309 1.45780 1.52710 1.88056 2.25861 2.31844 2.93564 3.34366 3.62993 3.78105 3.89016 4.01732 4.16385 4.32170 4.38229 4.67949 4.72195 4.73774 4.90202 4.97152 4.97642 5.21207 5.22922 5.37933 5.40626 6.04588 6.50315 6.69595 7.09797 7.25417 8.73139 Molecular weight = 283.04amu Principal moments of inertia in cm(-1) A = 0.025935 B = 0.004589 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.380375 B = 6100.537207 C = 6823.663593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.030 3.970 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.235 3.765 10 N -0.696 5.696 11 C 0.525 3.475 12 O -0.569 6.569 13 C -0.010 4.010 14 H 0.136 0.864 15 S -0.250 6.250 16 C -0.067 4.067 17 C -0.051 4.051 18 C -0.166 4.166 19 S 0.133 5.867 20 C -0.215 4.215 21 C -0.131 4.131 22 C -0.109 4.109 23 H 0.273 0.727 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.409 0.591 27 H 0.148 0.852 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.185 0.815 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.490 -16.093 -1.271 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.111 3.889 10 N -0.346 5.346 11 C 0.309 3.691 12 O -0.449 6.449 13 C -0.143 4.143 14 H 0.153 0.847 15 S -0.022 6.022 16 C -0.216 4.216 17 C -0.091 4.091 18 C -0.284 4.284 19 S 0.398 5.602 20 C -0.350 4.350 21 C -0.162 4.162 22 C -0.123 4.123 23 H 0.082 0.918 24 H 0.029 0.971 25 H 0.033 0.967 26 H 0.245 0.755 27 H 0.165 0.835 28 H 0.126 0.874 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.203 0.797 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.961 -15.401 -0.459 26.015 hybrid contribution -1.694 1.066 -1.190 2.329 sum 19.267 -14.335 -1.649 24.071 Atomic orbital electron populations 1.69974 1.07636 1.28651 1.50505 1.25557 0.95517 1.02524 0.93499 0.85891 0.79219 0.79467 0.79541 1.18777 1.19653 1.18733 1.21247 0.89704 0.94692 1.52866 0.92173 1.19132 0.93583 0.80393 0.95777 1.45998 1.06110 1.10172 1.72300 1.20017 0.82477 0.90177 0.76442 1.90654 1.56143 1.46767 1.51354 1.22037 0.97823 0.96737 0.97747 0.84672 1.87503 1.71880 1.34939 1.07887 1.23569 0.95679 0.94740 1.07621 1.20435 0.97747 0.98815 0.92115 1.24835 0.96158 1.05009 1.02430 1.83929 1.15465 1.44411 1.16404 1.25407 0.97339 1.06158 1.06080 1.20136 0.98857 1.01103 0.96111 1.18950 0.94573 1.01500 0.97279 0.91767 0.97058 0.96656 0.75513 0.83452 0.87423 0.88553 0.86020 0.79739 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.79 13.96 21.45 0.30 -55.50 16 2 C 0.03 1.69 5.47 84.66 0.46 2.15 16 3 Si 0.94 44.53 27.47 68.60 1.88 46.41 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.26 -12.54 6.54 99.48 0.65 -11.89 16 7 C -0.55 -30.63 9.83 25.60 0.25 -30.38 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 9 C 0.23 11.79 4.50 85.64 0.38 12.17 16 10 N -0.70 -29.17 5.55 -466.79 -2.59 -31.76 16 11 C 0.52 20.84 6.20 87.66 0.54 21.38 16 12 O -0.57 -26.83 15.55 -3.04 -0.05 -26.88 16 13 C -0.01 -0.29 3.21 29.70 0.10 -0.20 16 14 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 15 S -0.25 -6.67 21.63 -56.49 -1.22 -7.89 16 16 C -0.07 -0.97 6.52 71.79 0.47 -0.50 16 17 C -0.05 -0.74 5.90 29.88 0.18 -0.57 16 18 C -0.17 -3.67 6.28 24.93 0.16 -3.52 16 19 S 0.13 2.52 23.25 -56.49 -1.31 1.21 16 20 C -0.21 -5.00 11.18 66.71 0.75 -4.25 16 21 C -0.13 -3.83 8.59 21.59 0.19 -3.64 16 22 C -0.11 -3.07 5.12 -19.81 -0.10 -3.17 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 25 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 26 H 0.41 15.24 8.32 -92.70 -0.77 14.46 16 27 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.12 3.84 7.55 -2.91 -0.02 3.82 16 Total: -1.00 -71.19 296.52 0.70 -70.48 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.32 Total: 14.44 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 3.37 Total: -10.53 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.29 Total: -87.25 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.05 Total: -26.88 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Atomic # 16 Polarization: -4.14 SS G_CDS: -2.54 Total: -6.68 kcal Total: -71.19 0.70 -70.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334537333.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.806 kcal (2) G-P(sol) polarization free energy of solvation -71.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds