Wall clock time and date at job start Tue Mar 31 2020 05:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00215 * 2 1 4 4 H 1.48491 * 109.46959 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46788 * 299.99827 * 3 2 1 6 6 H 1.48501 * 109.46863 * 59.99455 * 3 2 1 7 7 C 1.38766 * 119.99458 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99685 * 165.42256 * 7 2 1 9 9 N 1.36806 * 120.00445 * 345.42112 * 7 2 1 10 10 C 1.47280 * 121.12118 * 335.13136 * 9 7 2 11 11 C 1.53536 * 107.61499 * 222.08778 * 10 9 7 12 12 O 1.42967 * 108.77398 * 301.87170 * 11 10 9 13 13 C 1.35885 * 117.78940 * 49.07555 * 12 11 10 14 14 C 1.38665 * 119.67522 * 159.68300 * 13 12 11 15 15 C 1.38229 * 120.07560 * 179.91227 * 14 13 12 16 16 C 1.38426 * 120.32875 * 0.30463 * 15 14 13 17 17 Br 1.89100 * 119.96649 * 180.02562 * 16 15 14 18 18 C 1.38245 * 120.07321 * 0.04709 * 16 15 14 19 19 C 1.38823 * 119.84952 * 359.96332 * 18 16 15 20 20 H 0.96998 * 119.99996 * 5.04297 * 1 2 3 21 21 H 1.08993 * 109.83243 * 341.61853 * 10 9 7 22 22 H 1.08998 * 109.82799 * 102.56300 * 10 9 7 23 23 H 1.09003 * 109.58246 * 61.66051 * 11 10 9 24 24 H 1.08999 * 109.58927 * 182.07950 * 11 10 9 25 25 H 1.07999 * 119.96163 * 0.17801 * 14 13 12 26 26 H 1.07995 * 119.83185 * 180.28777 * 15 14 13 27 27 H 1.07994 * 120.08087 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0099 -1.2018 0.0005 8 1 3.0639 -1.2170 -0.2349 9 7 1.3589 -2.3674 0.2993 10 6 0.1375 -2.3677 1.1223 11 6 0.2377 -3.5457 2.1020 12 8 0.3875 -4.7548 1.3539 13 6 1.3304 -4.7819 0.3758 14 6 1.8103 -5.9999 -0.0815 15 6 2.7681 -6.0372 -1.0775 16 6 3.2587 -4.8619 -1.6198 17 35 4.5685 -4.9249 -2.9824 18 6 2.7926 -3.6420 -1.1662 19 6 1.8308 -3.5985 -0.1661 20 1 -0.4850 0.8368 -0.0738 21 1 0.0644 -1.4317 1.6759 22 1 -0.7380 -2.4905 0.4848 23 1 1.1023 -3.4083 2.7514 24 1 -0.6693 -3.5984 2.7041 25 1 1.4321 -6.9204 0.3378 26 1 3.1357 -6.9880 -1.4339 27 1 3.1755 -2.7250 -1.5889 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336042401.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:56 Heat of formation + Delta-G solvation = -10.378292 kcal Electronic energy + Delta-G solvation = -14809.035358 eV Core-core repulsion = 12191.981645 eV Total energy + Delta-G solvation = -2617.053713 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 282.995 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47044 -38.25221 -37.42825 -33.90856 -32.75410 -31.41119 -30.16645 -28.98407 -26.07488 -24.86007 -23.25324 -21.08533 -19.32881 -18.95039 -17.49590 -17.35168 -16.53565 -15.83743 -15.40678 -15.10150 -14.96066 -14.62783 -14.56883 -13.83194 -13.41930 -12.96915 -12.88498 -12.52681 -12.46076 -12.20204 -12.12875 -11.46642 -11.32749 -11.11734 -11.00279 -10.48398 -9.21171 -8.47154 -8.35012 -5.79316 0.42072 0.68168 0.81873 1.39785 1.40719 1.52550 2.18075 2.47239 2.76988 3.01665 3.11070 3.86765 4.08473 4.22041 4.35878 4.50966 4.52864 4.72437 4.83261 5.10570 5.14560 5.24098 5.32046 5.52130 5.54047 5.80872 6.00908 6.50131 6.67212 7.27579 7.62844 8.66292 Molecular weight = 282.99amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.007553 C = 0.005467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.028511 B = 3706.435208 C = 5119.958749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.013 4.013 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.319 4.319 8 H 0.087 0.913 9 N -0.477 5.477 10 C 0.119 3.881 11 C 0.045 3.955 12 O -0.325 6.325 13 C 0.013 3.987 14 C -0.090 4.090 15 C -0.157 4.157 16 C -0.064 4.064 17 Br -0.058 7.058 18 C -0.174 4.174 19 C 0.127 3.873 20 H 0.272 0.728 21 H 0.089 0.911 22 H 0.039 0.961 23 H 0.059 0.941 24 H 0.141 0.859 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 -8.224 -0.609 9.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.214 4.214 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.447 4.447 8 H 0.105 0.895 9 N -0.170 5.170 10 C -0.006 4.006 11 C -0.031 4.031 12 O -0.240 6.240 13 C -0.037 4.037 14 C -0.110 4.110 15 C -0.180 4.180 16 C -0.144 4.144 17 Br 0.027 6.973 18 C -0.200 4.200 19 C 0.014 3.986 20 H 0.082 0.918 21 H 0.107 0.893 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.159 0.841 25 H 0.172 0.828 26 H 0.170 0.830 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.981 -7.941 -0.888 9.416 hybrid contribution -0.104 1.495 0.097 1.501 sum 4.877 -6.446 -0.790 8.122 Atomic orbital electron populations 1.70093 1.07037 1.28685 1.48583 1.26126 0.96369 1.02500 0.96366 0.84895 0.78538 0.77192 0.77984 1.18809 1.20490 1.19846 1.19689 0.93894 0.83735 1.47380 0.89541 1.42789 1.25172 1.02236 1.46759 1.21978 0.86805 0.98922 0.92853 1.23508 1.03812 0.83061 0.92734 1.85868 1.53878 1.37812 1.46399 1.18722 0.97343 0.93076 0.94576 1.20437 0.96914 0.95222 0.98437 1.20596 1.00526 0.96784 1.00124 1.21405 0.99100 0.95504 0.98393 1.96521 1.52547 1.99155 1.49069 1.20223 1.03100 0.96847 0.99853 1.18432 0.98324 0.86571 0.95254 0.91827 0.89255 0.94235 0.92309 0.84114 0.82817 0.83042 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.84 11.08 21.64 0.24 -47.60 15 2 C -0.01 -0.65 5.02 84.85 0.43 -0.22 15 3 Si 0.99 40.49 29.58 68.60 2.03 42.52 15 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 15 5 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 6 H -0.27 -10.81 7.11 99.48 0.71 -10.11 15 7 C -0.32 -16.77 8.82 84.04 0.74 -16.03 15 8 H 0.09 4.53 6.92 -2.91 -0.02 4.51 15 9 N -0.48 -24.09 3.03 -508.50 -1.54 -25.62 15 10 C 0.12 5.42 5.16 86.41 0.45 5.87 15 11 C 0.04 1.64 7.19 72.16 0.52 2.16 15 12 O -0.32 -12.91 10.32 -92.25 -0.95 -13.86 15 13 C 0.01 0.53 6.52 22.66 0.15 0.68 15 14 C -0.09 -3.12 9.97 22.37 0.22 -2.90 15 15 C -0.16 -5.20 9.77 22.31 0.22 -4.99 15 16 C -0.06 -2.39 6.22 22.32 0.14 -2.25 15 17 Br -0.06 -1.81 33.70 -20.37 -0.69 -2.50 15 18 C -0.17 -7.72 8.99 22.41 0.20 -7.52 15 19 C 0.13 5.98 6.34 38.30 0.24 6.23 15 20 H 0.27 13.55 8.32 -92.71 -0.77 12.78 15 21 H 0.09 4.26 6.53 -2.39 -0.02 4.25 15 22 H 0.04 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.14 3.97 8.14 -2.39 -0.02 3.96 15 25 H 0.15 4.30 8.06 -2.91 -0.02 4.28 15 26 H 0.15 4.00 8.06 -2.91 -0.02 3.98 15 27 H 0.11 5.26 6.72 -2.91 -0.02 5.24 15 Total: -1.00 -57.15 252.07 3.58 -53.57 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 1.19 Total: 12.47 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: 3.30 Total: -18.98 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.30 Total: -73.23 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.95 Total: -13.86 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 35 Polarization: -1.81 SS G_CDS: -0.69 Total: -2.50 kcal Total: -57.15 3.58 -53.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336042401.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.191 kcal (2) G-P(sol) polarization free energy of solvation -57.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds