Wall clock time and date at job start Tue Mar 31 2020 05:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86803 * 120.00310 * 2 1 4 4 H 1.48495 * 109.46987 * 239.99786 * 3 2 1 5 5 H 1.48499 * 109.46608 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47126 * 119.99432 * 3 2 1 7 7 C 1.40054 * 119.99996 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99685 * 0.02562 * 7 2 1 10 10 O 1.21684 * 120.00267 * 359.97438 * 9 7 2 11 11 N 1.34779 * 119.99723 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00093 * 179.97438 * 11 9 7 13 13 H 1.08998 * 115.55977 * 9.31675 * 12 11 9 14 14 C 1.53000 * 117.50234 * 223.62489 * 12 11 9 15 15 C 1.52998 * 117.49646 * 154.99977 * 12 11 9 16 16 H 1.09000 * 117.49906 * 0.02562 * 15 12 11 17 17 C 1.50701 * 117.51889 * 214.97174 * 15 12 11 18 18 C 1.38459 * 120.01875 * 342.21866 * 17 15 12 19 19 F 1.35107 * 120.01918 * 359.97438 * 18 17 15 20 20 C 1.38445 * 119.96299 * 179.97438 * 18 17 15 21 21 C 1.38225 * 120.00284 * 359.97438 * 20 18 17 22 22 C 1.38201 * 120.03669 * 359.97438 * 21 20 18 23 23 C 1.38291 * 120.02023 * 161.93302 * 17 15 12 24 24 Cl 1.73601 * 120.00131 * 0.02562 * 23 17 15 25 25 H 0.97007 * 120.00370 * 0.02562 * 1 2 3 26 26 H 0.97003 * 119.99852 * 0.02562 * 11 9 7 27 27 H 1.08995 * 117.49772 * 145.01936 * 14 12 11 28 28 H 1.08996 * 117.49329 * 0.02562 * 14 12 11 29 29 H 1.08007 * 119.99931 * 179.97438 * 20 18 17 30 30 H 1.08000 * 119.98352 * 180.02562 * 21 20 18 31 31 H 1.08004 * 119.98422 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6963 -1.2124 5 1 1.2757 2.7464 -0.0006 6 1 3.0944 1.6964 1.2125 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2129 0.0010 9 6 1.2750 -2.4805 0.0005 10 8 0.0581 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0005 12 6 1.2164 -4.9165 0.0011 13 1 0.1408 -4.8386 -0.1577 14 6 1.7142 -6.0193 0.9375 15 6 1.9282 -6.1434 -0.5725 16 1 2.9416 -6.0066 -0.9498 17 6 1.0890 -7.1521 -1.3135 18 6 -0.2860 -7.1624 -1.1511 19 9 -0.8761 -6.2683 -0.3278 20 6 -1.0559 -8.0893 -1.8329 21 6 -0.4520 -9.0035 -2.6755 22 6 0.9203 -8.9926 -2.8385 23 6 1.6911 -8.0644 -2.1607 24 17 3.4144 -8.0481 -2.3702 25 1 -0.4851 0.8401 -0.0004 26 1 2.9189 -3.6477 0.0009 27 1 0.9662 -6.6669 1.3947 28 1 2.5865 -5.8007 1.5534 29 1 -2.1285 -8.0980 -1.7064 30 1 -1.0529 -9.7262 -3.2076 31 1 1.3913 -9.7071 -3.4974 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336072392.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:49 Heat of formation + Delta-G solvation = -34.697092 kcal Electronic energy + Delta-G solvation = -19260.280866 eV Core-core repulsion = 15868.973086 eV Total energy + Delta-G solvation = -3391.307780 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.04708 -39.49640 -37.80464 -36.54465 -35.95698 -32.59212 -31.76024 -30.59009 -30.04610 -26.25771 -23.87488 -22.95043 -21.74329 -20.80253 -19.65890 -17.76471 -17.22570 -16.85679 -15.89839 -15.65228 -15.31152 -14.83574 -14.73873 -14.35915 -13.84870 -13.57491 -13.40502 -12.81631 -12.54697 -12.33684 -12.12170 -11.72856 -11.50775 -11.38655 -11.09997 -11.06503 -10.79234 -10.48201 -10.34967 -10.28134 -10.21056 -8.85760 -8.83781 -8.58945 -7.63993 -7.39053 -6.19609 -4.65798 0.85869 0.93801 1.95193 3.16168 3.20893 3.22825 3.25163 4.06824 4.15829 4.29755 4.37383 4.60428 4.64722 4.73517 4.90055 5.03917 5.26720 5.35203 5.46077 5.59105 5.76479 5.83726 5.92847 6.02267 6.02818 6.07760 6.38303 6.58287 6.70902 7.42338 7.88414 8.06456 8.30942 9.00837 9.49318 10.58476 10.76240 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.025258 B = 0.004266 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.313086 B = 6561.250977 C = 7175.650483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.544 4.544 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.576 6.576 11 N -0.735 5.735 12 C 0.115 3.885 13 H 0.156 0.844 14 C -0.189 4.189 15 C -0.162 4.162 16 H 0.120 0.880 17 C -0.058 4.058 18 C 0.112 3.888 19 F -0.115 7.115 20 C -0.146 4.146 21 C -0.092 4.092 22 C -0.120 4.120 23 C -0.010 4.010 24 Cl -0.057 7.057 25 H 0.269 0.731 26 H 0.381 0.619 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.648 -17.920 -4.546 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.458 6.458 11 N -0.386 5.386 12 C 0.006 3.994 13 H 0.173 0.827 14 C -0.228 4.228 15 C -0.182 4.182 16 H 0.138 0.862 17 C -0.060 4.060 18 C 0.092 3.908 19 F -0.093 7.093 20 C -0.164 4.164 21 C -0.110 4.110 22 C -0.139 4.139 23 C -0.037 4.037 24 Cl -0.028 7.028 25 H 0.080 0.920 26 H 0.213 0.787 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.689 -17.700 -4.530 18.348 hybrid contribution 1.166 0.787 0.092 1.410 sum 2.855 -16.913 -4.438 17.717 Atomic orbital electron populations 1.70008 1.07064 1.27461 1.34927 1.25702 0.94633 1.00284 0.92597 0.86410 0.79804 0.80940 0.79457 1.19270 1.20515 1.19256 1.20831 0.93587 0.89226 1.54470 0.91376 1.18261 0.87298 0.82140 0.76245 1.90599 1.13996 1.86559 1.54633 1.45762 1.08232 1.03868 1.80704 1.22232 0.99141 0.80399 0.97586 0.82671 1.23481 1.04092 1.05003 0.90237 1.21643 1.00747 1.00043 0.95809 0.86191 1.19104 0.91970 0.96837 0.98115 1.17414 0.89909 0.90353 0.93089 1.91437 1.83717 1.64724 1.69442 1.21271 1.01068 0.95825 0.98284 1.20879 0.93853 0.98450 0.97858 1.21055 0.93730 0.98764 1.00363 1.20448 0.85464 0.98030 0.99766 1.98367 1.10360 1.97867 1.96224 0.91975 0.78744 0.88846 0.88341 0.84034 0.84207 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.12 11.83 55.55 0.66 -22.46 16 2 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 3 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 7 C -0.54 -15.52 9.54 -35.63 -0.34 -15.86 16 8 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 9 C 0.56 16.12 7.75 -12.99 -0.10 16.02 16 10 O -0.58 -18.90 14.59 5.20 0.08 -18.83 16 11 N -0.73 -17.06 5.56 -55.22 -0.31 -17.37 16 12 C 0.11 2.36 5.57 -67.93 -0.38 1.98 16 13 H 0.16 3.59 4.40 -51.93 -0.23 3.37 16 14 C -0.19 -3.11 9.72 -26.73 -0.26 -3.37 16 15 C -0.16 -2.66 5.61 -91.77 -0.52 -3.18 16 16 H 0.12 1.89 6.90 -51.93 -0.36 1.53 16 17 C -0.06 -0.87 5.65 -104.52 -0.59 -1.46 16 18 C 0.11 1.65 7.04 -39.42 -0.28 1.37 16 19 F -0.11 -2.00 12.91 2.25 0.03 -1.97 16 20 C -0.15 -1.64 10.03 -39.51 -0.40 -2.04 16 21 C -0.09 -0.85 10.04 -39.60 -0.40 -1.24 16 22 C -0.12 -1.21 9.83 -39.54 -0.39 -1.60 16 23 C -0.01 -0.13 6.31 -39.50 -0.25 -0.38 16 24 Cl -0.06 -0.69 27.29 -51.86 -1.42 -2.10 16 25 H 0.27 7.37 8.29 -40.82 -0.34 7.04 16 26 H 0.38 7.75 8.81 -40.82 -0.36 7.39 16 27 H 0.09 1.45 7.87 -51.93 -0.41 1.04 16 28 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.14 1.30 8.06 -52.48 -0.42 0.87 16 30 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.14 1.04 8.06 -52.48 -0.42 0.61 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -34.10 292.08 -8.16 -42.27 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.59 Total: 8.24 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.99 Total: -7.39 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.35 Total: -39.83 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.08 Total: -18.83 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.03 Total: -1.97 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.42 Total: -2.10 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.10 -8.16 -42.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336072392.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.568 kcal (2) G-P(sol) polarization free energy of solvation -34.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds