Wall clock time and date at job start Tue Mar 31 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47435 * 274.99724 * 3 2 1 5 5 H 1.48505 * 109.47152 * 34.99747 * 3 2 1 6 6 H 1.48504 * 109.47085 * 154.99603 * 3 2 1 7 7 C 1.40046 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00045 * 185.10702 * 7 2 1 9 9 C 1.46373 * 119.99958 * 5.10798 * 7 2 1 10 10 O 1.21686 * 119.99946 * 354.89911 * 9 7 2 11 11 N 1.34779 * 119.99916 * 174.90352 * 9 7 2 12 12 C 1.46502 * 120.00047 * 179.97438 * 11 9 7 13 13 H 1.09003 * 115.54459 * 9.27766 * 12 11 9 14 14 C 1.52995 * 117.49805 * 223.60752 * 12 11 9 15 15 C 1.52997 * 60.03035 * 252.49661 * 14 12 11 16 16 H 1.08999 * 117.50162 * 252.51770 * 15 14 12 17 17 C 1.50702 * 117.49701 * 107.50539 * 15 14 12 18 18 C 1.38458 * 120.01678 * 240.58523 * 17 15 14 19 19 F 1.35102 * 120.01929 * 359.97438 * 18 17 15 20 20 C 1.38445 * 119.96312 * 179.76376 * 18 17 15 21 21 C 1.38231 * 120.00004 * 0.48486 * 20 18 17 22 22 C 1.38201 * 120.03623 * 359.76661 * 21 20 18 23 23 C 1.38289 * 120.02409 * 60.85082 * 17 15 14 24 24 Cl 1.73607 * 119.99683 * 0.03124 * 23 17 15 25 25 H 0.96995 * 120.00538 * 0.02562 * 1 2 3 26 26 H 0.96994 * 119.99859 * 359.97438 * 11 9 7 27 27 H 1.09000 * 117.50324 * 359.97438 * 14 12 11 28 28 H 1.09011 * 117.49542 * 144.99711 * 14 12 11 29 29 H 1.08006 * 120.00560 * 180.23200 * 20 18 17 30 30 H 1.07996 * 119.98061 * 179.74733 * 21 20 18 31 31 H 1.07995 * 119.98513 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3825 2.1075 -1.3947 5 1 1.4948 2.6199 0.8030 6 1 3.5870 1.4121 0.5918 7 6 2.0070 -1.2128 0.0005 8 1 3.0838 -1.2146 0.0838 9 6 1.2795 -2.4780 -0.1118 10 8 0.0627 -2.4822 -0.1121 11 7 1.9575 -3.6383 -0.2147 12 6 1.2294 -4.9047 -0.3265 13 1 0.1535 -4.8165 -0.4775 14 6 1.7314 -6.0842 0.5085 15 6 1.9454 -6.0743 -1.0064 16 1 1.3403 -6.7556 -1.6046 17 6 3.3457 -5.8357 -1.5097 18 6 3.6153 -4.7421 -2.3149 19 9 2.6232 -3.8886 -2.6502 20 6 4.9031 -4.5213 -2.7727 21 6 5.9169 -5.3979 -2.4341 22 6 5.6467 -6.4923 -1.6346 23 6 4.3610 -6.7119 -1.1722 24 17 4.0224 -8.0877 -0.1690 25 1 -0.4851 0.8400 -0.0004 26 1 2.9274 -3.6349 -0.2148 27 1 2.6036 -5.9183 1.1408 28 1 0.9856 -6.7723 0.9070 29 1 5.1150 -3.6663 -3.3978 30 1 6.9205 -5.2275 -2.7947 31 1 6.4392 -7.1769 -1.3709 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336072393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:52 Heat of formation + Delta-G solvation = -35.429533 kcal Electronic energy + Delta-G solvation = -19856.215277 eV Core-core repulsion = 16464.875736 eV Total energy + Delta-G solvation = -3391.339541 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.50063 -39.52719 -37.69491 -36.43036 -35.89838 -32.54297 -31.44341 -30.40065 -30.28426 -26.25376 -23.86098 -22.82475 -21.54366 -20.65911 -19.41277 -17.51092 -17.36248 -16.32919 -16.06746 -15.53703 -15.20637 -14.84369 -14.59378 -14.39034 -13.64933 -13.35699 -13.02211 -12.91564 -12.53189 -12.29594 -12.08062 -11.70515 -11.32160 -11.17979 -11.11508 -11.11071 -10.87488 -10.48345 -10.30058 -10.23630 -9.85127 -8.86506 -8.78837 -8.62714 -7.62341 -7.35476 -6.19145 -4.63174 0.97559 1.07644 2.05386 3.14152 3.21217 3.24744 3.40888 4.06043 4.12550 4.35305 4.53496 4.63455 4.75270 4.80553 5.04070 5.13521 5.38751 5.42496 5.47396 5.71623 5.91564 5.95589 5.99512 6.08335 6.14593 6.14714 6.36558 6.57003 6.76637 7.43885 7.87821 8.08749 8.33152 9.02845 9.50145 10.59930 10.78155 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.005481 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.781681 B = 5107.765534 C = 5801.053051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.561 3.439 10 O -0.578 6.578 11 N -0.730 5.730 12 C 0.134 3.866 13 H 0.133 0.867 14 C -0.184 4.184 15 C -0.156 4.156 16 H 0.119 0.881 17 C -0.079 4.079 18 C 0.133 3.867 19 F -0.107 7.107 20 C -0.155 4.155 21 C -0.084 4.084 22 C -0.132 4.132 23 C -0.003 4.003 24 Cl -0.058 7.058 25 H 0.268 0.732 26 H 0.378 0.622 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.905 -12.717 -4.024 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.579 4.579 8 H 0.084 0.916 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.381 5.381 12 C 0.025 3.975 13 H 0.150 0.850 14 C -0.223 4.223 15 C -0.176 4.176 16 H 0.137 0.863 17 C -0.081 4.081 18 C 0.113 3.887 19 F -0.085 7.085 20 C -0.174 4.174 21 C -0.103 4.103 22 C -0.150 4.150 23 C -0.030 4.030 24 Cl -0.029 7.029 25 H 0.079 0.921 26 H 0.210 0.790 27 H 0.110 0.890 28 H 0.115 0.885 29 H 0.159 0.841 30 H 0.156 0.844 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.734 -12.638 -3.932 17.041 hybrid contribution 0.874 0.674 -0.028 1.104 sum 11.608 -11.963 -3.960 17.133 Atomic orbital electron populations 1.70019 1.07042 1.27258 1.35187 1.25679 0.94589 1.00215 0.92608 0.86377 0.80250 0.81559 0.78691 1.19776 1.20411 1.18908 1.20828 0.93830 0.89425 1.53829 0.91579 1.18185 0.87139 0.82080 0.76022 1.90588 1.14039 1.86313 1.55138 1.45703 1.07979 1.04408 1.80008 1.21360 0.97263 0.80913 0.97957 0.84980 1.23482 1.03741 1.03839 0.91261 1.21432 0.93037 1.06603 0.96525 0.86348 1.19071 0.95343 0.94463 0.99194 1.17469 0.85884 0.88701 0.96667 1.91691 1.59493 1.67544 1.89789 1.21322 0.91405 1.01795 1.02886 1.20891 0.99190 0.93269 0.96925 1.21022 0.94953 0.99347 0.99724 1.20531 0.93891 0.91109 0.97438 1.98364 1.95651 1.41322 1.67524 0.92102 0.79048 0.88982 0.88480 0.84084 0.84377 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.85 55.55 0.66 -22.44 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.27 29.56 -169.99 -5.03 15.24 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.47 9.54 -35.63 -0.34 -15.81 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.33 16 9 C 0.56 16.10 7.74 -12.99 -0.10 16.00 16 10 O -0.58 -18.78 14.60 5.20 0.08 -18.70 16 11 N -0.73 -16.74 3.59 -55.18 -0.20 -16.94 16 12 C 0.13 2.65 5.93 -67.90 -0.40 2.25 16 13 H 0.13 2.86 7.40 -51.93 -0.38 2.48 16 14 C -0.18 -2.90 8.87 -26.74 -0.24 -3.14 16 15 C -0.16 -2.46 5.04 -91.74 -0.46 -2.92 16 16 H 0.12 1.70 8.14 -51.93 -0.42 1.28 16 17 C -0.08 -1.18 4.88 -104.52 -0.51 -1.69 16 18 C 0.13 2.10 5.87 -39.42 -0.23 1.87 16 19 F -0.11 -2.10 14.72 2.25 0.03 -2.07 16 20 C -0.16 -1.95 10.03 -39.51 -0.40 -2.35 16 21 C -0.08 -0.86 10.04 -39.60 -0.40 -1.25 16 22 C -0.13 -1.40 9.83 -39.54 -0.39 -1.79 16 23 C 0.00 -0.04 6.28 -39.51 -0.25 -0.28 16 24 Cl -0.06 -0.69 26.91 -51.86 -1.40 -2.08 16 25 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 26 H 0.38 8.04 6.98 -40.82 -0.29 7.76 16 27 H 0.09 1.47 8.09 -51.93 -0.42 1.05 16 28 H 0.10 1.36 8.14 -51.92 -0.42 0.93 16 29 H 0.14 1.56 8.06 -52.48 -0.42 1.13 16 30 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 31 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 291.17 15.07 4.39 4.39 Total: -1.00 -33.70 291.17 -8.02 -41.72 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -2.75 Total: 7.61 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -3.81 Total: -6.73 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.46 Total: -39.38 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: 0.08 Total: -18.70 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.03 Total: -2.07 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.40 Total: -2.08 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -33.70 -8.02 -41.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336072393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.294 kcal (2) G-P(sol) polarization free energy of solvation -33.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds