Wall clock time and date at job start Tue Mar 31 2020 05:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47435 * 274.99724 * 3 2 1 5 5 H 1.48505 * 109.47152 * 34.99747 * 3 2 1 6 6 H 1.48504 * 109.47085 * 154.99603 * 3 2 1 7 7 C 1.40046 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00045 * 185.10702 * 7 2 1 9 9 C 1.46373 * 119.99958 * 5.10798 * 7 2 1 10 10 O 1.21686 * 119.99946 * 354.89911 * 9 7 2 11 11 N 1.34779 * 119.99916 * 174.90352 * 9 7 2 12 12 C 1.46502 * 120.00047 * 179.97438 * 11 9 7 13 13 H 1.09003 * 115.54459 * 9.27766 * 12 11 9 14 14 C 1.52995 * 117.49805 * 223.60752 * 12 11 9 15 15 C 1.52997 * 60.03035 * 252.49661 * 14 12 11 16 16 H 1.08999 * 117.50162 * 252.51770 * 15 14 12 17 17 C 1.50702 * 117.49701 * 107.50539 * 15 14 12 18 18 C 1.38458 * 120.01678 * 240.58523 * 17 15 14 19 19 F 1.35102 * 120.01929 * 359.97438 * 18 17 15 20 20 C 1.38445 * 119.96312 * 179.76376 * 18 17 15 21 21 C 1.38231 * 120.00004 * 0.48486 * 20 18 17 22 22 C 1.38201 * 120.03623 * 359.76661 * 21 20 18 23 23 C 1.38289 * 120.02409 * 60.85082 * 17 15 14 24 24 Cl 1.73607 * 119.99683 * 0.03124 * 23 17 15 25 25 H 0.96995 * 120.00538 * 0.02562 * 1 2 3 26 26 H 0.96994 * 119.99859 * 359.97438 * 11 9 7 27 27 H 1.09000 * 117.50324 * 359.97438 * 14 12 11 28 28 H 1.09011 * 117.49542 * 144.99711 * 14 12 11 29 29 H 1.08006 * 120.00560 * 180.23200 * 20 18 17 30 30 H 1.07996 * 119.98061 * 179.74733 * 21 20 18 31 31 H 1.07995 * 119.98513 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3825 2.1075 -1.3947 5 1 1.4948 2.6199 0.8030 6 1 3.5870 1.4121 0.5918 7 6 2.0070 -1.2128 0.0005 8 1 3.0838 -1.2146 0.0838 9 6 1.2795 -2.4780 -0.1118 10 8 0.0627 -2.4822 -0.1121 11 7 1.9575 -3.6383 -0.2147 12 6 1.2294 -4.9047 -0.3265 13 1 0.1535 -4.8165 -0.4775 14 6 1.7314 -6.0842 0.5085 15 6 1.9454 -6.0743 -1.0064 16 1 1.3403 -6.7556 -1.6046 17 6 3.3457 -5.8357 -1.5097 18 6 3.6153 -4.7421 -2.3149 19 9 2.6232 -3.8886 -2.6502 20 6 4.9031 -4.5213 -2.7727 21 6 5.9169 -5.3979 -2.4341 22 6 5.6467 -6.4923 -1.6346 23 6 4.3610 -6.7119 -1.1722 24 17 4.0224 -8.0877 -0.1690 25 1 -0.4851 0.8400 -0.0004 26 1 2.9274 -3.6349 -0.2148 27 1 2.6036 -5.9183 1.1408 28 1 0.9856 -6.7723 0.9070 29 1 5.1150 -3.6663 -3.3978 30 1 6.9205 -5.2275 -2.7947 31 1 6.4392 -7.1769 -1.3709 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336072393.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:51 Heat of formation + Delta-G solvation = -56.835768 kcal Electronic energy + Delta-G solvation = -19857.143521 eV Core-core repulsion = 16464.875736 eV Total energy + Delta-G solvation = -3392.267785 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.80935 -40.70037 -39.37059 -37.64393 -37.37650 -34.67473 -33.25892 -31.56108 -31.31991 -28.39275 -24.94870 -24.00133 -23.10137 -22.06526 -21.10660 -19.34589 -18.60090 -17.66477 -17.48063 -17.18050 -16.65140 -16.17560 -15.95156 -15.63177 -15.36416 -14.67453 -14.62870 -14.36340 -14.06245 -13.89325 -13.25469 -12.99238 -12.87264 -12.84967 -12.63488 -12.30328 -12.22502 -12.16023 -12.02488 -11.70898 -11.26349 -10.93307 -9.91170 -9.82986 -9.66447 -9.17207 -8.30792 -6.86004 0.00447 0.07501 1.08866 1.38367 1.40075 1.55845 2.23186 2.40286 2.44720 2.80052 2.96543 3.34029 3.50427 3.62325 3.83292 3.94199 4.12279 4.19041 4.27871 4.31212 4.54586 4.81921 4.83209 4.98943 5.07972 5.09672 5.20448 5.24471 5.30033 5.76694 5.85491 6.16420 6.29162 6.85424 7.49072 8.48206 8.66551 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.005481 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.781681 B = 5107.765534 C = 5801.053051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.082 0.918 9 C 0.546 3.454 10 O -0.631 6.631 11 N -0.716 5.716 12 C 0.085 3.915 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.127 4.127 16 H 0.130 0.870 17 C -0.100 4.100 18 C 0.094 3.906 19 F -0.143 7.143 20 C -0.156 4.156 21 C -0.067 4.067 22 C -0.119 4.119 23 C -0.009 4.009 24 Cl -0.050 7.050 25 H 0.275 0.725 26 H 0.386 0.614 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.182 0.818 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.623 -13.435 -4.083 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.607 4.607 8 H 0.100 0.900 9 C 0.351 3.649 10 O -0.518 6.518 11 N -0.366 5.366 12 C -0.022 4.022 13 H 0.118 0.882 14 C -0.193 4.193 15 C -0.147 4.147 16 H 0.148 0.852 17 C -0.101 4.101 18 C 0.074 3.926 19 F -0.121 7.121 20 C -0.175 4.175 21 C -0.085 4.085 22 C -0.137 4.137 23 C -0.036 4.036 24 Cl -0.021 7.021 25 H 0.085 0.915 26 H 0.220 0.780 27 H 0.114 0.886 28 H 0.137 0.863 29 H 0.170 0.830 30 H 0.199 0.801 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 14.495 -13.427 -3.992 20.158 hybrid contribution -0.207 0.734 -0.038 0.763 sum 14.288 -12.694 -4.030 19.533 Atomic orbital electron populations 1.70186 1.09533 1.28956 1.36342 1.26958 0.95516 1.04875 0.91156 0.85023 0.78971 0.75151 0.79241 1.18733 1.19518 1.17104 1.21336 0.94745 0.90230 1.54424 0.89999 1.18524 0.86741 0.83915 0.75696 1.90533 1.16148 1.87477 1.57661 1.45187 1.08125 1.04320 1.78958 1.21355 0.96038 0.81180 1.03675 0.88180 1.23486 1.03625 1.00624 0.91572 1.21409 0.93606 1.02959 0.96723 0.85188 1.19042 0.95215 0.95490 1.00399 1.17913 0.86541 0.89276 0.98874 1.91602 1.61177 1.68863 1.90478 1.21593 0.90559 1.02730 1.02605 1.21383 1.00230 0.91678 0.95196 1.21478 0.94603 0.99523 0.98117 1.20655 0.94251 0.90989 0.97694 1.98369 1.95729 1.40702 1.67280 0.91529 0.78029 0.88600 0.86270 0.82975 0.80116 0.81344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.42 11.85 21.83 0.26 -51.16 16 2 C 0.03 1.72 5.50 85.30 0.47 2.19 16 3 Si 1.00 41.77 29.56 68.60 2.03 43.80 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.57 -33.50 9.54 24.83 0.24 -33.26 16 8 H 0.08 4.36 7.85 -2.91 -0.02 4.34 16 9 C 0.55 33.04 7.74 86.36 0.67 33.71 16 10 O -0.63 -43.73 14.60 -4.30 -0.06 -43.80 16 11 N -0.72 -34.35 3.59 -446.72 -1.60 -35.95 16 12 C 0.09 3.54 5.93 45.01 0.27 3.80 16 13 H 0.10 4.75 7.40 -2.39 -0.02 4.73 16 14 C -0.15 -4.79 8.87 30.59 0.27 -4.52 16 15 C -0.13 -4.02 5.04 -11.52 -0.06 -4.08 16 16 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 17 C -0.10 -2.90 4.88 -19.80 -0.10 -3.00 16 18 C 0.09 2.95 5.87 22.37 0.13 3.08 16 19 F -0.14 -5.89 14.72 44.97 0.66 -5.22 16 20 C -0.16 -3.61 10.03 22.32 0.22 -3.39 16 21 C -0.07 -1.07 10.04 22.26 0.22 -0.85 16 22 C -0.12 -2.02 9.83 22.30 0.22 -1.80 16 23 C -0.01 -0.21 6.28 22.32 0.14 -0.07 16 24 Cl -0.05 -1.05 26.91 -2.72 -0.07 -1.12 16 25 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 26 H 0.39 16.95 6.98 -92.71 -0.65 16.30 16 27 H 0.10 2.94 8.09 -2.39 -0.02 2.92 16 28 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 29 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 30 H 0.18 1.39 8.06 -2.91 -0.02 1.37 16 31 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -78.83 291.17 4.44 -74.39 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.54 Total: 27.24 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 2.70 Total: -8.18 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -1.35 Total: -87.11 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.06 Total: -43.80 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.66 Total: -5.22 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.07 Total: -1.12 kcal Total: -78.83 4.44 -74.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336072393.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.557 kcal (2) G-P(sol) polarization free energy of solvation -78.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds