Wall clock time and date at job start Tue Mar 31 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47069 * 264.99511 * 3 2 1 5 5 H 1.48501 * 109.46586 * 24.99302 * 3 2 1 6 6 H 1.48490 * 109.47347 * 144.99034 * 3 2 1 7 7 C 1.40053 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00098 * 186.09753 * 7 2 1 9 9 C 1.46381 * 119.99939 * 6.09458 * 7 2 1 10 10 O 1.21688 * 119.99807 * 353.59285 * 9 7 2 11 11 N 1.34778 * 119.99930 * 173.85747 * 9 7 2 12 12 C 1.46494 * 120.00122 * 179.72518 * 11 9 7 13 13 H 1.09008 * 115.54767 * 350.59091 * 12 11 9 14 14 C 1.53000 * 117.49801 * 136.25622 * 12 11 9 15 15 C 1.53001 * 117.50159 * 204.91718 * 12 11 9 16 16 H 1.09003 * 117.49830 * 145.01924 * 15 12 11 17 17 C 1.50701 * 117.49526 * 0.02562 * 15 12 11 18 18 C 1.38457 * 120.01950 * 306.61028 * 17 15 12 19 19 F 1.35103 * 120.01806 * 359.97438 * 18 17 15 20 20 C 1.38442 * 119.96548 * 180.02562 * 18 17 15 21 21 C 1.38231 * 119.99914 * 0.02562 * 20 18 17 22 22 C 1.38203 * 120.03948 * 359.97438 * 21 20 18 23 23 C 1.38294 * 120.01886 * 126.34583 * 17 15 12 24 24 Cl 1.73596 * 120.00243 * 359.97438 * 23 17 15 25 25 H 0.96997 * 119.99966 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99462 * 359.73633 * 11 9 7 27 27 H 1.09007 * 117.49623 * 214.97910 * 14 12 11 28 28 H 1.08992 * 117.49660 * 0.02562 * 14 12 11 29 29 H 1.07992 * 120.00467 * 179.97438 * 20 18 17 30 30 H 1.07995 * 119.98062 * 179.97438 * 21 20 18 31 31 H 1.07999 * 119.98811 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.5941 1.9852 -1.3947 5 1 1.3894 2.6808 0.5916 6 1 3.4814 1.4729 0.8032 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.0988 9 6 1.2812 -2.4769 -0.1357 10 8 0.0643 -2.4834 -0.1303 11 7 1.9607 -3.6341 -0.2608 12 6 1.2345 -4.8998 -0.3900 13 1 0.1596 -4.8448 -0.2170 14 6 1.7309 -5.8951 -1.4406 15 6 1.9560 -6.1762 0.0471 16 1 1.3559 -6.9611 0.5074 17 6 3.3593 -6.0351 0.5782 18 6 4.3186 -5.3713 -0.1675 19 9 3.9974 -4.8501 -1.3718 20 6 5.6075 -5.2427 0.3213 21 6 5.9362 -5.7774 1.5529 22 6 4.9787 -6.4400 2.2972 23 6 3.6881 -6.5637 1.8131 24 17 2.4842 -7.3897 2.7522 25 1 -0.4850 0.8400 0.0004 26 1 2.9307 -3.6288 -0.2650 27 1 0.9827 -6.4952 -1.9586 28 1 2.5981 -5.6083 -2.0354 29 1 6.3564 -4.7254 -0.2600 30 1 6.9419 -5.6773 1.9336 31 1 5.2363 -6.8571 3.2596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336072394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:55 Heat of formation + Delta-G solvation = -27.123555 kcal Electronic energy + Delta-G solvation = -19807.309289 eV Core-core repulsion = 16416.329923 eV Total energy + Delta-G solvation = -3390.979367 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.21603 -39.50452 -37.73980 -36.46968 -35.93719 -32.56236 -31.47932 -30.52715 -30.32298 -26.27206 -23.81417 -22.94111 -21.80059 -20.87929 -19.39984 -17.66148 -17.51470 -16.87288 -15.99276 -15.64675 -15.30592 -14.79215 -14.55358 -14.32403 -13.86403 -13.48710 -13.29463 -13.03067 -12.59287 -12.38299 -12.01390 -11.77045 -11.44018 -11.20146 -11.09362 -11.01791 -10.65150 -10.48455 -10.39923 -10.26026 -10.10316 -8.85305 -8.79010 -8.58317 -7.64424 -7.36044 -6.20868 -4.65080 0.91955 0.99092 2.02565 3.14423 3.20561 3.23548 3.30873 4.08530 4.16741 4.27843 4.47562 4.60024 4.70939 4.76711 4.81483 5.07477 5.35294 5.37162 5.46821 5.67646 5.77422 5.86471 5.92282 6.08590 6.09596 6.19405 6.40629 6.57580 6.67576 7.42515 7.88338 8.07115 8.31660 9.00991 9.48541 10.57900 10.75792 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.005474 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.841962 B = 5114.264455 C = 5470.689363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.557 3.443 10 O -0.578 6.578 11 N -0.734 5.734 12 C 0.139 3.861 13 H 0.135 0.865 14 C -0.220 4.220 15 C -0.163 4.163 16 H 0.121 0.879 17 C -0.053 4.053 18 C 0.102 3.898 19 F -0.115 7.115 20 C -0.141 4.141 21 C -0.093 4.093 22 C -0.116 4.116 23 C -0.010 4.010 24 Cl -0.057 7.057 25 H 0.269 0.731 26 H 0.380 0.620 27 H 0.095 0.905 28 H 0.124 0.876 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.828 -13.125 2.559 17.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.362 3.638 10 O -0.461 6.461 11 N -0.388 5.388 12 C 0.030 3.970 13 H 0.152 0.848 14 C -0.259 4.259 15 C -0.183 4.183 16 H 0.139 0.861 17 C -0.055 4.055 18 C 0.082 3.918 19 F -0.093 7.093 20 C -0.160 4.160 21 C -0.111 4.111 22 C -0.135 4.135 23 C -0.037 4.037 24 Cl -0.027 7.027 25 H 0.080 0.920 26 H 0.215 0.785 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.158 0.842 31 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.619 -13.012 2.617 16.997 hybrid contribution 0.798 0.675 -0.099 1.050 sum 11.417 -12.337 2.518 16.997 Atomic orbital electron populations 1.70018 1.07069 1.27386 1.34955 1.25691 0.94609 1.00258 0.92575 0.86384 0.80077 0.81247 0.79052 1.19572 1.20434 1.18966 1.20825 0.94027 0.89492 1.53735 0.91531 1.18249 0.87197 0.82191 0.76207 1.90587 1.14007 1.86242 1.55256 1.45918 1.08678 1.04547 1.79690 1.21324 0.97108 0.80746 0.97851 0.84787 1.24223 1.05784 1.05089 0.90793 1.21679 0.93016 1.04498 0.99073 0.86094 1.19015 0.95098 0.98015 0.93322 1.17353 0.93400 0.98396 0.82640 1.91337 1.92379 1.84003 1.41627 1.21257 0.95057 1.01974 0.97710 1.20874 0.99712 0.97052 0.93490 1.21071 0.91025 1.00489 1.00932 1.20419 0.90732 1.00014 0.92528 1.98366 1.56212 1.76716 1.71453 0.92020 0.78456 0.88703 0.85869 0.83981 0.84164 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.17 11.85 55.55 0.66 -22.51 16 2 C 0.09 2.51 5.49 -17.36 -0.10 2.41 16 3 Si 0.91 20.33 29.56 -169.99 -5.03 15.30 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.54 -15.73 9.54 -35.63 -0.34 -16.07 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.56 16.29 7.74 -12.98 -0.10 16.19 16 10 O -0.58 -18.96 14.61 5.20 0.08 -18.88 16 11 N -0.73 -17.42 5.05 -55.21 -0.28 -17.70 16 12 C 0.14 2.84 6.37 -67.93 -0.43 2.41 16 13 H 0.13 2.96 7.40 -51.92 -0.38 2.58 16 14 C -0.22 -3.65 9.64 -26.69 -0.26 -3.90 16 15 C -0.16 -2.66 5.65 -91.73 -0.52 -3.18 16 16 H 0.12 1.81 6.97 -51.93 -0.36 1.45 16 17 C -0.05 -0.81 5.34 -104.52 -0.56 -1.37 16 18 C 0.10 1.51 5.70 -39.43 -0.22 1.28 16 19 F -0.12 -1.88 11.37 2.25 0.03 -1.85 16 20 C -0.14 -1.66 10.03 -39.51 -0.40 -2.06 16 21 C -0.09 -0.93 10.04 -39.60 -0.40 -1.33 16 22 C -0.12 -1.28 9.83 -39.54 -0.39 -1.67 16 23 C -0.01 -0.14 6.31 -39.50 -0.25 -0.39 16 24 Cl -0.06 -0.73 27.33 -51.86 -1.42 -2.15 16 25 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 26 H 0.38 8.31 4.87 -40.82 -0.20 8.11 16 27 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 28 H 0.12 2.06 4.97 -51.93 -0.26 1.80 16 29 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 31 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -34.16 285.46 -8.06 -42.22 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.44 Total: 8.94 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.96 Total: -7.67 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.38 Total: -40.21 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.08 Total: -18.88 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.03 Total: -1.85 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.03 Total: 15.30 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.42 Total: -2.15 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -34.16 -8.06 -42.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336072394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.098 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds