Wall clock time and date at job start Tue Mar 31 2020 05:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00464 * 2 1 4 4 H 1.48499 * 109.47069 * 264.99511 * 3 2 1 5 5 H 1.48501 * 109.46586 * 24.99302 * 3 2 1 6 6 H 1.48490 * 109.47347 * 144.99034 * 3 2 1 7 7 C 1.40053 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00098 * 186.09753 * 7 2 1 9 9 C 1.46381 * 119.99939 * 6.09458 * 7 2 1 10 10 O 1.21688 * 119.99807 * 353.59285 * 9 7 2 11 11 N 1.34778 * 119.99930 * 173.85747 * 9 7 2 12 12 C 1.46494 * 120.00122 * 179.72518 * 11 9 7 13 13 H 1.09008 * 115.54767 * 350.59091 * 12 11 9 14 14 C 1.53000 * 117.49801 * 136.25622 * 12 11 9 15 15 C 1.53001 * 117.50159 * 204.91718 * 12 11 9 16 16 H 1.09003 * 117.49830 * 145.01924 * 15 12 11 17 17 C 1.50701 * 117.49526 * 0.02562 * 15 12 11 18 18 C 1.38457 * 120.01950 * 306.61028 * 17 15 12 19 19 F 1.35103 * 120.01806 * 359.97438 * 18 17 15 20 20 C 1.38442 * 119.96548 * 180.02562 * 18 17 15 21 21 C 1.38231 * 119.99914 * 0.02562 * 20 18 17 22 22 C 1.38203 * 120.03948 * 359.97438 * 21 20 18 23 23 C 1.38294 * 120.01886 * 126.34583 * 17 15 12 24 24 Cl 1.73596 * 120.00243 * 359.97438 * 23 17 15 25 25 H 0.96997 * 119.99966 * 359.97438 * 1 2 3 26 26 H 0.97000 * 119.99462 * 359.73633 * 11 9 7 27 27 H 1.09007 * 117.49623 * 214.97910 * 14 12 11 28 28 H 1.08992 * 117.49660 * 0.02562 * 14 12 11 29 29 H 1.07992 * 120.00467 * 179.97438 * 20 18 17 30 30 H 1.07995 * 119.98062 * 179.97438 * 21 20 18 31 31 H 1.07999 * 119.98811 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.5941 1.9852 -1.3947 5 1 1.3894 2.6808 0.5916 6 1 3.4814 1.4729 0.8032 7 6 2.0069 -1.2129 -0.0005 8 1 3.0823 -1.2157 0.0988 9 6 1.2812 -2.4769 -0.1357 10 8 0.0643 -2.4834 -0.1303 11 7 1.9607 -3.6341 -0.2608 12 6 1.2345 -4.8998 -0.3900 13 1 0.1596 -4.8448 -0.2170 14 6 1.7309 -5.8951 -1.4406 15 6 1.9560 -6.1762 0.0471 16 1 1.3559 -6.9611 0.5074 17 6 3.3593 -6.0351 0.5782 18 6 4.3186 -5.3713 -0.1675 19 9 3.9974 -4.8501 -1.3718 20 6 5.6075 -5.2427 0.3213 21 6 5.9362 -5.7774 1.5529 22 6 4.9787 -6.4400 2.2972 23 6 3.6881 -6.5637 1.8131 24 17 2.4842 -7.3897 2.7522 25 1 -0.4850 0.8400 0.0004 26 1 2.9307 -3.6288 -0.2650 27 1 0.9827 -6.4952 -1.9586 28 1 2.5981 -5.6083 -2.0354 29 1 6.3564 -4.7254 -0.2600 30 1 6.9419 -5.6773 1.9336 31 1 5.2363 -6.8571 3.2596 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336072394.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:55 Heat of formation + Delta-G solvation = -49.376182 kcal Electronic energy + Delta-G solvation = -19808.274236 eV Core-core repulsion = 16416.329923 eV Total energy + Delta-G solvation = -3391.944313 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.37976 -40.65881 -39.43819 -37.71312 -37.46778 -34.70494 -33.31437 -31.66748 -31.36413 -28.42837 -24.92309 -23.95213 -23.47455 -22.32287 -21.13479 -19.46187 -18.67959 -18.09781 -17.60765 -17.18293 -16.66115 -16.13706 -15.87316 -15.69102 -15.29002 -14.90541 -14.78903 -14.51416 -14.28120 -13.91253 -13.24431 -13.07820 -12.85455 -12.79285 -12.65114 -12.45850 -12.22315 -12.06517 -12.03625 -11.68047 -11.51250 -10.94182 -9.92965 -9.80047 -9.74691 -9.17639 -8.33423 -6.89719 -0.04123 -0.01295 1.02066 1.38271 1.40951 1.55466 2.22456 2.28902 2.44140 2.90502 2.99837 3.15784 3.42071 3.57999 3.74757 3.85086 3.96076 4.12044 4.23879 4.32444 4.51785 4.70718 4.79185 4.96357 4.98056 5.10368 5.20703 5.24015 5.27608 5.71100 5.82676 6.13872 6.24588 6.82291 7.45474 8.43644 8.63029 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.005474 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.841962 B = 5114.264455 C = 5470.689363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.030 3.970 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.539 3.461 10 O -0.629 6.629 11 N -0.724 5.724 12 C 0.089 3.911 13 H 0.104 0.896 14 C -0.200 4.200 15 C -0.131 4.131 16 H 0.132 0.868 17 C -0.086 4.086 18 C 0.076 3.924 19 F -0.131 7.131 20 C -0.140 4.140 21 C -0.075 4.075 22 C -0.111 4.111 23 C -0.023 4.023 24 Cl -0.059 7.059 25 H 0.276 0.724 26 H 0.390 0.610 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.166 0.834 30 H 0.185 0.815 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.322 -13.153 3.329 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.185 4.185 3 Si 0.818 3.182 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.610 4.610 8 H 0.101 0.899 9 C 0.344 3.656 10 O -0.517 6.517 11 N -0.378 5.378 12 C -0.019 4.019 13 H 0.122 0.878 14 C -0.238 4.238 15 C -0.151 4.151 16 H 0.150 0.850 17 C -0.088 4.088 18 C 0.056 3.944 19 F -0.110 7.110 20 C -0.158 4.158 21 C -0.093 4.093 22 C -0.130 4.130 23 C -0.049 4.049 24 Cl -0.030 7.030 25 H 0.086 0.914 26 H 0.227 0.773 27 H 0.134 0.866 28 H 0.144 0.856 29 H 0.184 0.816 30 H 0.202 0.798 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 14.154 -13.110 3.383 19.587 hybrid contribution -0.217 0.543 -0.289 0.652 sum 13.937 -12.566 3.094 19.019 Atomic orbital electron populations 1.70182 1.09581 1.29154 1.35922 1.26995 0.95551 1.04937 0.91055 0.85017 0.78681 0.74735 0.79783 1.18355 1.19510 1.17156 1.21344 0.94985 0.90255 1.54449 0.89890 1.18646 0.86879 0.84026 0.76015 1.90532 1.16037 1.87385 1.57716 1.45491 1.08977 1.04497 1.78788 1.21325 0.96045 0.81212 1.03296 0.87762 1.24274 1.05751 1.02523 0.91274 1.21619 0.93700 1.01048 0.98719 0.85013 1.19048 0.94511 1.00433 0.94771 1.17735 0.94810 0.99362 0.82460 1.91279 1.92665 1.84375 1.42645 1.21647 0.94087 1.01554 0.98552 1.21430 1.01292 0.94451 0.92080 1.21516 0.89860 0.99601 1.02009 1.20666 0.91912 1.00274 0.92081 1.98365 1.56610 1.76723 1.71292 0.91383 0.77298 0.86628 0.85632 0.81618 0.79767 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.18 11.85 21.84 0.26 -50.92 16 2 C 0.03 1.71 5.49 85.31 0.47 2.18 16 3 Si 1.00 41.51 29.56 68.60 2.03 43.54 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 6 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.57 -33.88 9.54 24.83 0.24 -33.64 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 9 C 0.54 33.04 7.74 86.36 0.67 33.71 16 10 O -0.63 -43.82 14.61 -4.31 -0.06 -43.88 16 11 N -0.72 -35.73 5.05 -446.82 -2.26 -37.99 16 12 C 0.09 3.83 6.37 44.99 0.29 4.11 16 13 H 0.10 5.03 7.40 -2.38 -0.02 5.01 16 14 C -0.20 -6.71 9.64 30.62 0.30 -6.41 16 15 C -0.13 -4.34 5.65 -11.51 -0.07 -4.40 16 16 H 0.13 3.97 6.97 -2.39 -0.02 3.95 16 17 C -0.09 -2.58 5.34 -19.80 -0.11 -2.68 16 18 C 0.08 2.16 5.70 22.37 0.13 2.28 16 19 F -0.13 -4.24 11.37 44.97 0.51 -3.73 16 20 C -0.14 -2.85 10.03 22.32 0.22 -2.63 16 21 C -0.07 -1.16 10.04 22.26 0.22 -0.93 16 22 C -0.11 -2.05 9.83 22.30 0.22 -1.83 16 23 C -0.02 -0.57 6.31 22.32 0.14 -0.43 16 24 Cl -0.06 -1.47 27.33 -2.72 -0.07 -1.54 16 25 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 26 H 0.39 17.43 4.87 -92.71 -0.45 16.97 16 27 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 28 H 0.13 4.22 4.97 -2.39 -0.01 4.20 16 29 H 0.17 2.53 8.06 -2.91 -0.02 2.50 16 30 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -79.02 285.46 3.87 -75.15 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.74 Total: 30.05 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 2.72 Total: -10.68 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -2.00 Total: -88.91 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.06 Total: -43.88 kcal Atomic # 9 Polarization: -4.24 SS G_CDS: 0.51 Total: -3.73 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.07 Total: -1.54 kcal Total: -79.02 3.87 -75.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336072394.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.778 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds