Wall clock time and date at job start Tue Mar 31 2020 05:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86805 * 119.99987 * 2 1 4 4 H 1.48502 * 109.46640 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47146 * 300.00184 * 3 2 1 6 6 H 1.48494 * 109.47055 * 60.00401 * 3 2 1 7 7 C 1.37878 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00034 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47225 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00281 * 180.02562 * 10 9 7 12 12 O 1.21592 * 119.99795 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00132 * 179.97438 * 11 10 9 14 14 C 1.38995 * 119.99883 * 179.97438 * 13 11 10 15 15 N 1.28300 * 125.00224 * 179.97438 * 14 13 11 16 16 C 1.36474 * 117.85278 * 180.02562 * 15 14 13 17 17 C 1.46551 * 135.26764 * 179.97438 * 16 15 14 18 18 C 1.31758 * 114.93110 * 180.02562 * 17 16 15 19 19 S 1.75239 * 110.91584 * 359.97438 * 18 17 16 20 20 C 1.36402 * 112.96183 * 0.02562 * 16 15 14 21 21 S 1.75681 * 125.00001 * 0.02687 * 14 13 11 22 22 H 0.97002 * 119.99864 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47370 * 59.99918 * 9 7 2 24 24 H 1.09001 * 109.46911 * 300.00267 * 9 7 2 25 25 H 0.96999 * 119.99756 * 359.97438 * 10 9 7 26 26 H 0.96999 * 119.99906 * 359.97438 * 13 11 10 27 27 H 1.07998 * 122.53493 * 0.02562 * 17 16 15 28 28 H 1.07997 * 124.54058 * 180.27153 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7538 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6296 -5.9078 -0.0016 14 6 2.1662 -7.2182 -0.0016 15 7 2.9117 -8.2624 -0.0025 16 6 2.3002 -9.4825 -0.0029 17 6 2.7557 -10.8754 -0.0044 18 6 1.7928 -11.7746 -0.0047 19 16 0.2183 -11.0053 -0.0026 20 6 0.9389 -9.3954 -0.0028 21 16 0.4735 -7.6885 -0.0016 22 1 -0.4850 0.8401 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5570 0.8897 25 1 3.1567 -3.4354 -0.0009 26 1 3.5832 -5.7305 -0.0020 27 1 3.8017 -11.1444 -0.0051 28 1 1.9524 -12.8428 -0.0015 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336464900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:53 Heat of formation + Delta-G solvation = 20.650786 kcal Electronic energy + Delta-G solvation = -16422.004106 eV Core-core repulsion = 13497.812930 eV Total energy + Delta-G solvation = -2924.191177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.019 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.69805 -40.45823 -37.07764 -36.29631 -35.02521 -34.28888 -30.01910 -29.08258 -26.18756 -24.82004 -23.08090 -22.69362 -21.10816 -20.27964 -19.54702 -18.24402 -18.02193 -17.16947 -17.14182 -16.74036 -16.05330 -15.75325 -15.24525 -15.18512 -14.81340 -14.26695 -14.09470 -13.84686 -13.32689 -12.95928 -12.76192 -12.63262 -12.20500 -11.95766 -11.46771 -11.46639 -11.43266 -10.87722 -10.85487 -10.82781 -10.07600 -9.23508 -8.82641 -8.29688 -6.45510 -0.48113 -0.33213 0.45389 0.53976 0.63914 1.04523 1.15228 1.45938 1.46561 1.59623 1.68138 2.10078 2.37435 2.87669 3.06577 3.34409 3.91911 4.31743 4.68639 4.87467 4.96229 5.05612 5.12357 5.23118 5.31464 5.42242 5.73397 5.84012 6.40364 6.63431 6.85021 7.16664 7.31237 8.82259 Molecular weight = 283.02amu Principal moments of inertia in cm(-1) A = 0.062977 B = 0.003127 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.503056 B = 8953.133074 C = 9382.493243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.086 0.914 9 C 0.282 3.718 10 N -0.698 5.698 11 C 0.696 3.304 12 O -0.597 6.597 13 N -0.623 5.623 14 C 0.321 3.679 15 N -0.507 5.507 16 C 0.066 3.934 17 C -0.097 4.097 18 C -0.176 4.176 19 S 0.196 5.804 20 C -0.366 4.366 21 S 0.218 5.782 22 H 0.269 0.731 23 H -0.001 1.001 24 H -0.001 1.001 25 H 0.413 0.587 26 H 0.435 0.565 27 H 0.172 0.828 28 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 -21.628 -0.002 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.159 3.841 10 N -0.350 5.350 11 C 0.394 3.606 12 O -0.477 6.477 13 N -0.278 5.278 14 C -0.057 4.057 15 N -0.230 5.230 16 C -0.066 4.066 17 C -0.129 4.129 18 C -0.313 4.313 19 S 0.453 5.547 20 C -0.601 4.601 21 S 0.463 5.537 22 H 0.078 0.922 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.249 0.751 26 H 0.277 0.723 27 H 0.189 0.811 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.372 -21.459 0.000 21.722 hybrid contribution 2.776 1.197 -0.002 3.023 sum 6.148 -20.262 -0.002 21.174 Atomic orbital electron populations 1.70126 1.08113 1.28566 1.49774 1.25981 0.95745 1.03644 0.93892 0.85128 0.79101 0.77523 0.77567 1.17722 1.20628 1.20617 1.21606 0.94473 0.90249 1.53065 0.89605 1.18650 0.87876 0.82363 0.95179 1.45293 1.11980 1.02536 1.75223 1.16037 0.84488 0.81455 0.78575 1.90810 1.15212 1.82765 1.58924 1.41686 1.11529 0.99730 1.74895 1.23305 0.93677 0.88159 1.00542 1.66096 1.37218 0.96368 1.23306 1.20468 0.87498 0.92520 1.06112 1.20602 1.02535 0.85417 1.04374 1.25624 0.94166 1.05238 1.06236 1.83724 1.06966 0.87869 1.76142 1.29565 1.02842 1.07309 1.20426 1.86289 1.04016 0.89519 1.73916 0.92197 0.98340 0.98347 0.75057 0.72342 0.81059 0.76284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.78 13.29 21.45 0.28 -53.50 15 2 C 0.01 0.40 5.46 84.65 0.46 0.86 15 3 Si 0.98 40.87 29.54 68.60 2.03 42.90 15 4 H -0.25 -9.74 7.11 99.48 0.71 -9.03 15 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 15 6 H -0.28 -11.55 7.11 99.48 0.71 -10.84 15 7 C -0.56 -28.59 9.28 25.60 0.24 -28.36 15 8 H 0.09 3.97 7.60 -2.91 -0.02 3.95 15 9 C 0.28 14.44 5.43 85.63 0.46 14.90 15 10 N -0.70 -27.39 5.55 -482.30 -2.68 -30.06 15 11 C 0.70 26.99 8.53 179.06 1.53 28.52 15 12 O -0.60 -27.55 13.82 -4.00 -0.06 -27.61 15 13 N -0.62 -19.28 5.41 -324.69 -1.76 -21.04 15 14 C 0.32 10.63 8.33 179.58 1.50 12.13 15 15 N -0.51 -15.98 10.66 -185.65 -1.98 -17.96 15 16 C 0.07 1.88 7.54 40.16 0.30 2.18 15 17 C -0.10 -1.87 10.43 23.71 0.25 -1.62 15 18 C -0.18 -2.47 11.05 67.09 0.74 -1.72 15 19 S 0.20 3.76 23.27 -56.49 -1.31 2.45 15 20 C -0.37 -10.37 7.74 67.39 0.52 -9.84 15 21 S 0.22 7.34 20.48 -56.49 -1.16 6.18 15 22 H 0.27 14.60 8.31 -92.71 -0.77 13.83 15 23 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 24 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 25 H 0.41 13.01 8.34 -92.71 -0.77 12.23 15 26 H 0.44 10.23 8.83 -92.71 -0.82 9.41 15 27 H 0.17 2.43 8.06 -2.91 -0.02 2.40 15 28 H 0.22 1.08 8.06 -2.91 -0.02 1.06 15 Total: -1.00 -68.65 282.58 -0.98 -69.63 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -0.35 Total: 11.96 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: 6.00 Total: 17.04 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -6.13 Total: -122.56 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.61 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 11.10 SS G_CDS: -2.47 Total: 8.63 kcal Total: -68.65 -0.98 -69.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336464900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.283 kcal (2) G-P(sol) polarization free energy of solvation -68.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds