Wall clock time and date at job start Tue Mar 31 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99463 * 2 1 4 4 H 1.48500 * 109.47252 * 269.99840 * 3 2 1 5 5 H 1.48498 * 109.47472 * 30.00235 * 3 2 1 6 6 H 1.48500 * 109.46841 * 150.00218 * 3 2 1 7 7 C 1.38811 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99606 * 179.72264 * 7 2 1 9 9 N 1.36935 * 119.99787 * 359.97438 * 7 2 1 10 10 S 1.65600 * 119.99568 * 174.59158 * 9 7 2 11 11 O 1.42102 * 106.40262 * 177.95573 * 10 9 7 12 12 O 1.42095 * 106.40609 * 310.87571 * 10 9 7 13 13 C 1.76199 * 107.21868 * 64.41793 * 10 9 7 14 14 C 1.31827 * 122.54954 * 244.61049 * 13 10 9 15 15 S 1.75304 * 111.39812 * 179.85708 * 14 13 10 16 16 C 1.75902 * 92.19338 * 0.34240 * 15 14 13 17 17 C 1.39858 * 130.56027 * 179.81835 * 16 15 14 18 18 C 1.37465 * 120.17441 * 179.97438 * 17 16 15 19 19 C 1.38855 * 120.18785 * 0.02562 * 18 17 16 20 20 C 1.36088 * 120.59440 * 0.02562 * 19 18 17 21 21 C 1.39742 * 109.68107 * 359.81172 * 16 15 14 22 22 H 0.96997 * 120.00482 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00459 * 354.59703 * 9 7 2 24 24 H 1.08002 * 124.30078 * 359.97438 * 14 13 10 25 25 H 1.07993 * 119.91435 * 0.02562 * 17 16 15 26 26 H 1.07994 * 119.90372 * 179.97438 * 18 17 16 27 27 H 1.08004 * 119.70117 * 179.97438 * 19 18 17 28 28 H 1.07995 * 119.77571 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0051 9 7 1.3257 -2.3880 -0.0005 10 16 2.1482 -3.8189 -0.1364 11 8 1.1744 -4.8507 -0.0564 12 8 3.0338 -3.6697 -1.2376 13 6 3.1597 -3.9772 1.2977 14 6 4.4767 -3.9843 1.2394 15 16 5.1865 -4.1520 2.8335 16 6 3.6066 -4.2247 3.6034 17 6 3.2568 -4.3656 4.9502 18 6 1.9334 -4.3968 5.3208 19 6 0.9366 -4.2891 4.3601 20 6 1.2549 -4.1522 3.0441 21 6 2.6055 -4.1159 2.6345 22 1 -0.4851 0.8400 -0.0004 23 1 0.3590 -2.3900 0.0789 24 1 5.0460 -3.8959 0.3259 25 1 4.0284 -4.4494 5.7011 26 1 1.6683 -4.5062 6.3619 27 1 -0.1006 -4.3149 4.6600 28 1 0.4690 -4.0691 2.3081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336472504.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:05 Heat of formation + Delta-G solvation = -29.038985 kcal Electronic energy + Delta-G solvation = -17716.697989 eV Core-core repulsion = 14758.059351 eV Total energy + Delta-G solvation = -2958.638638 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.24847 -36.18219 -35.02697 -34.77991 -34.66980 -31.02911 -30.80311 -29.18330 -24.56441 -23.80620 -22.59056 -21.01349 -18.33179 -18.29171 -17.83616 -16.62802 -16.16377 -15.41696 -15.13901 -14.66046 -14.36511 -14.31558 -13.64387 -13.48919 -13.36197 -12.52086 -12.02466 -11.92809 -11.57670 -11.37648 -11.24206 -11.14701 -11.11832 -10.99669 -10.59430 -10.54993 -10.37363 -10.12342 -9.91063 -9.54984 -8.36329 -8.32000 -7.71513 -6.49266 -3.93541 0.82466 1.29187 1.40840 1.76080 2.14353 2.20405 3.17225 3.22062 3.23995 3.86578 4.02435 4.39872 4.67015 4.77847 4.97380 5.08131 5.09911 5.37241 5.43716 5.60573 5.70657 5.87392 6.10056 6.17545 6.43435 6.53062 6.67437 6.97067 7.02160 7.45307 8.61333 8.75373 9.17938 10.66659 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.007419 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.451549 B = 3773.188781 C = 3986.729146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.034 3.966 3 Si 0.922 3.078 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.278 4.278 8 H 0.102 0.898 9 N -0.944 5.944 10 S 2.630 3.370 11 O -0.993 6.993 12 O -0.969 6.969 13 C -0.648 4.648 14 C -0.072 4.072 15 S 0.074 5.926 16 C -0.145 4.145 17 C -0.086 4.086 18 C -0.110 4.110 19 C -0.115 4.115 20 C -0.075 4.075 21 C -0.007 4.007 22 H 0.274 0.726 23 H 0.409 0.591 24 H 0.183 0.817 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.129 0.871 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.133 -5.355 8.824 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.174 4.174 3 Si 0.749 3.251 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.417 4.417 8 H 0.120 0.880 9 N -0.697 5.697 10 S 2.717 3.283 11 O -0.982 6.982 12 O -0.959 6.959 13 C -0.740 4.740 14 C -0.209 4.209 15 S 0.339 5.661 16 C -0.260 4.260 17 C -0.109 4.109 18 C -0.131 4.131 19 C -0.134 4.134 20 C -0.095 4.095 21 C -0.015 4.015 22 H 0.084 0.916 23 H 0.245 0.755 24 H 0.200 0.800 25 H 0.141 0.859 26 H 0.146 0.854 27 H 0.147 0.853 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.753 -6.060 8.671 12.550 hybrid contribution -1.040 1.213 0.322 1.629 sum 5.713 -4.847 8.993 11.705 Atomic orbital electron populations 1.69688 1.05921 1.28311 1.48013 1.25186 0.95646 0.99326 0.97220 0.85989 0.79270 0.81139 0.78716 1.20005 1.20675 1.19359 1.19257 0.92083 0.82957 1.47436 0.88021 1.51697 1.16567 1.18605 1.82828 1.05708 0.73138 0.73373 0.76093 1.93443 1.59636 1.57272 1.87800 1.93479 1.66689 1.86703 1.49004 1.31958 1.08319 1.14513 1.19237 1.25150 0.96732 0.97622 1.01349 1.83801 1.06407 1.76678 0.99221 1.22728 0.96474 1.09066 0.97734 1.20381 0.96716 1.01390 0.92386 1.20991 0.92121 1.00499 0.99496 1.20683 0.99756 1.00465 0.92537 1.20939 0.94192 0.97341 0.96992 1.18538 0.93632 0.99855 0.89493 0.91564 0.75468 0.80029 0.85855 0.85412 0.85261 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.96 13.07 55.49 0.73 -22.24 15 2 C 0.03 0.85 5.50 -17.43 -0.10 0.75 15 3 Si 0.92 19.65 29.55 -169.99 -5.02 14.63 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 5 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 7 C -0.28 -6.98 9.63 -15.06 -0.15 -7.13 15 8 H 0.10 2.45 7.82 -52.49 -0.41 2.04 15 9 N -0.94 -22.47 5.74 31.50 0.18 -22.29 15 10 S 2.63 58.46 5.51 -107.50 -0.59 57.87 15 11 O -0.99 -23.20 17.33 -57.17 -0.99 -24.19 15 12 O -0.97 -23.22 17.02 -57.17 -0.97 -24.19 15 13 C -0.65 -12.96 5.90 -38.64 -0.23 -13.19 15 14 C -0.07 -1.28 10.48 28.84 0.30 -0.98 15 15 S 0.07 1.13 23.23 -107.50 -2.50 -1.36 15 16 C -0.14 -2.45 6.48 -38.41 -0.25 -2.70 15 17 C -0.09 -1.22 10.07 -39.26 -0.40 -1.61 15 18 C -0.11 -1.44 10.03 -39.63 -0.40 -1.83 15 19 C -0.11 -1.67 9.95 -40.13 -0.40 -2.07 15 20 C -0.07 -1.35 9.67 -39.24 -0.38 -1.73 15 21 C -0.01 -0.14 6.02 -105.38 -0.63 -0.78 15 22 H 0.27 6.76 8.31 -40.82 -0.34 6.42 15 23 H 0.41 9.79 8.04 -34.47 -0.28 9.52 15 24 H 0.18 2.85 7.72 -52.49 -0.41 2.45 15 25 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 26 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 27 H 0.13 1.51 8.06 -52.48 -0.42 1.09 15 28 H 0.13 2.45 7.44 -52.49 -0.39 2.06 15 LS Contribution 280.01 15.07 4.22 4.22 Total: -1.00 -30.19 280.01 -9.46 -39.64 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -1.89 Total: 9.18 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -2.62 Total: -31.27 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.91 Total: -44.53 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -1.96 Total: -48.39 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Atomic # 16 Polarization: 59.60 SS G_CDS: -3.09 Total: 56.51 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.19 -9.46 -39.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336472504.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.606 kcal (2) G-P(sol) polarization free energy of solvation -30.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds