Wall clock time and date at job start Tue Mar 31 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 119.99463 * 2 1 4 4 H 1.48500 * 109.47252 * 269.99840 * 3 2 1 5 5 H 1.48498 * 109.47472 * 30.00235 * 3 2 1 6 6 H 1.48500 * 109.46841 * 150.00218 * 3 2 1 7 7 C 1.38811 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99606 * 179.72264 * 7 2 1 9 9 N 1.36935 * 119.99787 * 359.97438 * 7 2 1 10 10 S 1.65600 * 119.99568 * 174.59158 * 9 7 2 11 11 O 1.42102 * 106.40262 * 177.95573 * 10 9 7 12 12 O 1.42095 * 106.40609 * 310.87571 * 10 9 7 13 13 C 1.76199 * 107.21868 * 64.41793 * 10 9 7 14 14 C 1.31827 * 122.54954 * 244.61049 * 13 10 9 15 15 S 1.75304 * 111.39812 * 179.85708 * 14 13 10 16 16 C 1.75902 * 92.19338 * 0.34240 * 15 14 13 17 17 C 1.39858 * 130.56027 * 179.81835 * 16 15 14 18 18 C 1.37465 * 120.17441 * 179.97438 * 17 16 15 19 19 C 1.38855 * 120.18785 * 0.02562 * 18 17 16 20 20 C 1.36088 * 120.59440 * 0.02562 * 19 18 17 21 21 C 1.39742 * 109.68107 * 359.81172 * 16 15 14 22 22 H 0.96997 * 120.00482 * 0.02562 * 1 2 3 23 23 H 0.96996 * 120.00459 * 354.59703 * 9 7 2 24 24 H 1.08002 * 124.30078 * 359.97438 * 14 13 10 25 25 H 1.07993 * 119.91435 * 0.02562 * 17 16 15 26 26 H 1.07994 * 119.90372 * 179.97438 * 18 17 16 27 27 H 1.08004 * 119.70117 * 179.97438 * 19 18 17 28 28 H 1.07995 * 119.77571 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0051 9 7 1.3257 -2.3880 -0.0005 10 16 2.1482 -3.8189 -0.1364 11 8 1.1744 -4.8507 -0.0564 12 8 3.0338 -3.6697 -1.2376 13 6 3.1597 -3.9772 1.2977 14 6 4.4767 -3.9843 1.2394 15 16 5.1865 -4.1520 2.8335 16 6 3.6066 -4.2247 3.6034 17 6 3.2568 -4.3656 4.9502 18 6 1.9334 -4.3968 5.3208 19 6 0.9366 -4.2891 4.3601 20 6 1.2549 -4.1522 3.0441 21 6 2.6055 -4.1159 2.6345 22 1 -0.4851 0.8400 -0.0004 23 1 0.3590 -2.3900 0.0789 24 1 5.0460 -3.8959 0.3259 25 1 4.0284 -4.4494 5.7011 26 1 1.6683 -4.5062 6.3619 27 1 -0.1006 -4.3149 4.6600 28 1 0.4690 -4.0691 2.3081 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336472504.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:04 Heat of formation + Delta-G solvation = -49.948311 kcal Electronic energy + Delta-G solvation = -17717.604685 eV Core-core repulsion = 14758.059351 eV Total energy + Delta-G solvation = -2959.545335 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 283.012 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.47767 -38.13200 -36.81861 -36.47732 -36.29283 -32.83683 -32.00607 -30.45788 -26.43113 -25.19220 -23.80943 -22.45401 -20.14362 -19.96787 -19.27444 -18.31489 -17.78664 -16.86053 -16.41959 -16.30754 -16.04002 -15.66952 -15.33864 -14.88046 -14.65003 -13.92014 -13.82470 -13.24435 -13.15383 -13.06403 -13.03947 -12.90992 -12.72192 -12.53906 -12.31891 -12.11777 -11.88906 -11.79167 -11.56515 -10.82317 -10.17157 -9.60694 -8.94461 -8.29516 -5.88624 -0.55914 -0.38234 0.20088 0.46666 0.78226 0.80712 1.46523 1.49337 1.57496 2.26275 2.60022 2.68077 2.87698 3.22524 3.38931 3.72838 3.86683 4.03951 4.25186 4.37290 4.45060 4.62223 4.70617 4.98952 5.07489 5.19768 5.33953 5.49879 5.63063 5.89194 6.74511 6.96093 7.32874 8.89195 Molecular weight = 283.01amu Principal moments of inertia in cm(-1) A = 0.016102 B = 0.007419 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.451549 B = 3773.188781 C = 3986.729146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.015 4.015 3 Si 0.979 3.021 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.315 4.315 8 H 0.103 0.897 9 N -0.972 5.972 10 S 2.690 3.310 11 O -1.003 7.003 12 O -0.991 6.991 13 C -0.676 4.676 14 C -0.079 4.079 15 S 0.162 5.838 16 C -0.172 4.172 17 C -0.083 4.083 18 C -0.099 4.099 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.041 4.041 22 H 0.271 0.729 23 H 0.406 0.594 24 H 0.198 0.802 25 H 0.161 0.839 26 H 0.174 0.826 27 H 0.156 0.844 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 -6.482 11.758 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.216 4.216 3 Si 0.803 3.197 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.184 1.184 7 C -0.448 4.448 8 H 0.120 0.880 9 N -0.726 5.726 10 S 2.779 3.221 11 O -0.993 6.993 12 O -0.981 6.981 13 C -0.776 4.776 14 C -0.216 4.216 15 S 0.427 5.573 16 C -0.287 4.287 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.128 4.128 20 C -0.135 4.135 21 C -0.048 4.048 22 H 0.080 0.920 23 H 0.241 0.759 24 H 0.215 0.785 25 H 0.178 0.822 26 H 0.191 0.809 27 H 0.174 0.826 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.957 -7.075 11.560 16.245 hybrid contribution -1.519 1.129 -0.412 1.937 sum 7.437 -5.947 11.148 14.661 Atomic orbital electron populations 1.69789 1.07046 1.28460 1.51922 1.25894 0.96385 1.01978 0.97328 0.85141 0.78369 0.77687 0.78539 1.20007 1.20531 1.18426 1.19344 0.92118 0.83606 1.49740 0.87953 1.51140 1.16443 1.18531 1.86470 1.02027 0.72811 0.72189 0.75056 1.93450 1.60548 1.57168 1.88176 1.93466 1.67429 1.86885 1.50344 1.31111 1.08751 1.19572 1.18167 1.25547 0.96470 0.95168 1.04376 1.83458 1.04089 1.74400 0.95377 1.23155 0.96968 1.09784 0.98820 1.20916 0.98282 0.99576 0.91744 1.21531 0.91235 0.97958 1.01219 1.21104 1.01912 0.98308 0.91437 1.21042 0.93624 1.00312 0.98485 1.18646 0.94828 1.01853 0.89445 0.91970 0.75901 0.78545 0.82189 0.80883 0.82638 0.86811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.52 13.07 21.65 0.28 -51.24 15 2 C -0.01 -0.78 5.50 84.86 0.47 -0.31 15 3 Si 0.98 41.60 29.55 68.60 2.03 43.63 15 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.28 -11.65 7.11 99.48 0.71 -10.94 15 6 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 7 C -0.32 -16.53 9.63 84.03 0.81 -15.72 15 8 H 0.10 5.12 7.82 -2.91 -0.02 5.09 15 9 N -0.97 -48.68 5.74 -54.27 -0.31 -48.99 15 10 S 2.69 122.45 5.51 -56.49 -0.31 122.14 15 11 O -1.00 -48.05 17.33 -128.00 -2.22 -50.26 15 12 O -0.99 -48.11 17.02 -128.00 -2.18 -50.29 15 13 C -0.68 -26.79 5.90 23.32 0.14 -26.65 15 14 C -0.08 -2.63 10.48 67.03 0.70 -1.93 15 15 S 0.16 4.33 23.23 -56.49 -1.31 3.02 15 16 C -0.17 -5.30 6.48 23.03 0.15 -5.15 15 17 C -0.08 -1.96 10.07 22.48 0.23 -1.73 15 18 C -0.10 -2.12 10.03 22.24 0.22 -1.89 15 19 C -0.11 -2.90 9.95 21.92 0.22 -2.68 15 20 C -0.11 -4.11 9.67 22.49 0.22 -3.89 15 21 C -0.04 -1.52 6.02 -20.35 -0.12 -1.64 15 22 H 0.27 14.20 8.31 -92.71 -0.77 13.43 15 23 H 0.41 20.85 8.04 -96.75 -0.78 20.08 15 24 H 0.20 5.81 7.72 -2.91 -0.02 5.78 15 25 H 0.16 2.56 8.06 -2.91 -0.02 2.54 15 26 H 0.17 2.15 8.06 -2.91 -0.02 2.13 15 27 H 0.16 3.21 8.06 -2.91 -0.02 3.18 15 28 H 0.11 4.39 7.44 -2.91 -0.02 4.37 15 Total: -1.00 -67.92 280.01 -0.56 -68.48 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.44 Total: 25.13 kcal Atomic # 6 Polarization: -64.64 SS G_CDS: 3.03 Total: -61.61 kcal Atomic # 7 Polarization: -100.20 SS G_CDS: -0.03 Total: -100.23 kcal Atomic # 8 Polarization: -96.15 SS G_CDS: -4.40 Total: -100.55 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 126.78 SS G_CDS: -1.62 Total: 125.16 kcal Total: -67.92 -0.56 -68.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336472504.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.527 kcal (2) G-P(sol) polarization free energy of solvation -67.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds