Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47108 * 86.07175 * 3 2 1 5 5 H 1.48500 * 109.47134 * 206.07341 * 3 2 1 6 6 H 1.48502 * 109.47568 * 326.07438 * 3 2 1 7 7 C 1.38950 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99784 * 17.86202 * 7 2 1 9 9 N 1.37093 * 119.99682 * 197.86069 * 7 2 1 10 10 C 1.34775 * 120.00579 * 45.27255 * 9 7 2 11 11 O 1.21295 * 119.99420 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00164 * 179.97438 * 10 9 7 13 13 S 1.81399 * 109.47050 * 180.02562 * 12 10 9 14 14 C 1.81392 * 103.00177 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.47341 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.47003 * 59.99990 * 15 14 13 17 17 F 1.39905 * 109.47350 * 179.97438 * 15 14 13 18 18 F 1.39899 * 109.47080 * 299.99824 * 15 14 13 19 19 C 1.46504 * 119.99814 * 225.27654 * 9 7 2 20 20 C 1.53002 * 117.49624 * 3.22341 * 19 9 7 21 21 C 1.52998 * 117.49875 * 294.60136 * 19 9 7 22 22 H 0.97005 * 120.00026 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47090 * 300.00080 * 12 10 9 24 24 H 1.08997 * 109.47001 * 60.00660 * 12 10 9 25 25 H 1.09001 * 109.47270 * 300.00087 * 14 13 12 26 26 H 1.08999 * 109.47518 * 59.99602 * 14 13 12 27 27 H 1.08998 * 115.55506 * 148.93085 * 19 9 7 28 28 H 1.09000 * 117.50129 * 359.97438 * 20 19 9 29 29 H 1.09008 * 117.49934 * 145.02363 * 20 19 9 30 30 H 1.08995 * 117.50043 * 214.97713 * 21 19 9 31 31 H 1.09001 * 117.50079 * 359.97418 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4125 2.0944 1.3968 5 1 3.5847 1.4176 -0.6154 6 1 1.4896 2.6274 -0.7814 7 6 2.0089 -1.2033 -0.0005 8 1 1.5079 -2.1159 -0.2878 9 7 3.3302 -1.2321 0.3636 10 6 3.7424 -0.5623 1.4581 11 8 2.9441 0.0656 2.1212 12 6 5.1949 -0.5944 1.8586 13 16 5.4298 0.3946 3.3611 14 6 7.2086 0.2371 3.6793 15 6 7.5740 1.0294 4.9362 16 9 6.8586 0.5270 6.0285 17 9 8.9459 0.9075 5.1820 18 9 7.2516 2.3776 4.7478 19 6 4.2944 -1.9908 -0.4371 20 6 3.7791 -2.6671 -1.7091 21 6 4.1328 -3.5115 -0.4832 22 1 -0.4850 0.8401 0.0004 23 1 5.4960 -1.6241 2.0511 24 1 5.8030 -0.1824 1.0533 25 1 7.4600 -0.8133 3.8257 26 1 7.7661 0.6289 2.8285 27 1 5.3085 -1.5917 -0.4544 28 1 2.7227 -2.5480 -1.9500 29 1 4.4543 -2.7130 -2.5637 30 1 5.0406 -4.1128 -0.5312 31 1 3.3095 -3.9476 0.0826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341574202.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = -138.848719 kcal Electronic energy + Delta-G solvation = -20227.148677 eV Core-core repulsion = 16414.971814 eV Total energy + Delta-G solvation = -3812.176862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.22604 -47.76380 -47.65674 -39.19466 -36.55534 -33.07670 -31.77326 -31.51406 -29.63558 -24.77187 -23.76389 -22.00640 -21.57669 -19.71083 -18.79123 -18.67661 -17.92861 -16.99850 -16.24905 -15.85390 -15.47540 -14.92475 -14.68258 -14.58012 -14.26045 -14.12528 -13.88696 -13.85490 -13.67032 -13.53541 -13.37840 -12.80908 -12.73482 -12.20668 -12.06517 -11.52202 -11.23195 -11.06078 -10.42583 -10.20284 -10.08144 -9.98867 -9.89582 -8.71700 -8.63009 -7.68320 -7.57628 -6.29191 -4.10040 1.17746 2.29310 2.62959 3.16839 3.39372 3.57398 3.58934 3.63222 3.82050 4.10613 4.18697 4.38674 4.48427 4.73119 4.93582 4.95924 5.18491 5.22048 5.33389 5.44271 5.47242 5.65792 6.02815 6.16020 6.50893 6.76336 7.73907 7.83614 8.61177 8.74695 9.30215 9.62973 10.76330 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.022339 B = 0.005308 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.086837 B = 5273.758424 C = 6049.910136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.096 3.904 3 Si 0.899 3.101 4 H -0.250 1.250 5 H -0.279 1.279 6 H -0.302 1.302 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.429 5.429 10 C 0.469 3.531 11 O -0.521 6.521 12 C -0.119 4.119 13 S -0.127 6.127 14 C -0.188 4.188 15 C 0.478 3.522 16 F -0.172 7.172 17 F -0.181 7.181 18 F -0.172 7.172 19 C 0.057 3.943 20 C -0.168 4.168 21 C -0.197 4.197 22 H 0.274 0.726 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.015 -2.090 3.087 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.114 4.114 3 Si 0.728 3.272 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.230 1.230 7 C -0.473 4.473 8 H 0.114 0.886 9 N -0.151 5.151 10 C 0.256 3.744 11 O -0.401 6.401 12 C -0.271 4.271 13 S 0.097 5.903 14 C -0.337 4.337 15 C 0.423 3.577 16 F -0.153 7.153 17 F -0.163 7.163 18 F -0.153 7.153 19 C -0.048 4.048 20 C -0.205 4.205 21 C -0.236 4.236 22 H 0.084 0.916 23 H 0.125 0.875 24 H 0.118 0.882 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.124 0.876 28 H 0.132 0.868 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.671 -1.096 4.044 16.221 hybrid contribution 1.505 0.086 -0.771 1.693 sum 17.175 -1.010 3.273 17.513 Atomic orbital electron populations 1.69725 1.06739 1.28375 1.44629 1.25285 0.94911 0.99336 0.91915 0.86536 0.79155 0.82449 0.79041 1.17459 1.20454 1.23031 1.18656 0.82593 0.95868 1.50172 0.88601 1.43000 1.07485 1.44624 1.19968 1.19324 0.87406 0.85435 0.82209 1.90632 1.54087 1.43011 1.52417 1.23722 1.02013 1.03221 0.98110 1.88019 0.99253 1.67951 1.35048 1.24765 1.04880 1.05408 0.98651 1.19574 0.74400 0.78627 0.85140 1.93240 1.77978 1.87045 1.57045 1.93201 1.32084 1.95873 1.95105 1.93239 1.92359 1.34565 1.95184 1.21832 0.93658 0.91250 0.98099 1.23153 1.03743 1.02771 0.90870 1.23304 1.03031 0.94212 1.03071 0.91584 0.87529 0.88202 0.85821 0.85944 0.87599 0.86793 0.89334 0.89404 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.79 13.96 55.50 0.77 -25.01 16 2 C 0.10 2.75 4.88 -17.47 -0.09 2.66 16 3 Si 0.90 23.60 24.91 -169.99 -4.23 19.36 16 4 H -0.25 -6.94 6.38 56.52 0.36 -6.58 16 5 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 7 C -0.35 -9.37 8.35 -14.94 -0.12 -9.49 16 8 H 0.10 2.71 7.47 -52.49 -0.39 2.31 16 9 N -0.43 -9.79 2.45 -107.73 -0.26 -10.06 16 10 C 0.47 10.68 5.89 -10.99 -0.06 10.61 16 11 O -0.52 -14.18 11.70 5.54 0.06 -14.11 16 12 C -0.12 -1.94 5.04 36.01 0.18 -1.76 16 13 S -0.13 -2.11 20.35 -107.50 -2.19 -4.30 16 14 C -0.19 -2.01 5.96 37.16 0.22 -1.79 16 15 C 0.48 5.66 3.14 37.16 0.12 5.78 16 16 F -0.17 -2.28 17.01 2.25 0.04 -2.24 16 17 F -0.18 -1.96 17.32 2.25 0.04 -1.93 16 18 F -0.17 -2.32 17.01 2.25 0.04 -2.28 16 19 C 0.06 0.99 5.87 -67.93 -0.40 0.59 16 20 C -0.17 -2.69 9.80 -26.73 -0.26 -2.95 16 21 C -0.20 -2.96 10.36 -26.73 -0.28 -3.24 16 22 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.11 1.42 8.11 -51.92 -0.42 1.00 16 24 H 0.10 1.38 7.56 -51.93 -0.39 0.99 16 25 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 26 H 0.12 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.11 1.50 6.96 -51.93 -0.36 1.13 16 28 H 0.11 2.13 6.74 -51.93 -0.35 1.78 16 29 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 290.47 15.07 4.38 4.38 Total: -1.00 -32.62 290.47 -5.25 -37.88 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -3.21 Total: -2.10 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -0.69 Total: 0.41 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.51 Total: -35.07 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.06 Total: -14.11 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.12 Total: -6.45 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.23 Total: 19.36 kcal Atomic # 16 Polarization: -2.11 SS G_CDS: -2.19 Total: -4.30 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.62 -5.25 -37.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341574202.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.973 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds