Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86808 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47246 * 240.00191 * 3 2 1 5 5 H 1.48501 * 109.46759 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46870 * 119.99760 * 3 2 1 7 7 C 1.38797 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00051 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47088 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00274 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00131 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46859 * 325.00066 * 14 13 11 16 16 C 1.52989 * 109.47178 * 204.99878 * 14 13 11 17 17 C 1.53000 * 117.50008 * 248.61886 * 16 14 13 18 18 C 1.52997 * 60.00347 * 252.51154 * 17 16 14 19 19 C 1.53001 * 109.47319 * 84.99284 * 14 13 11 20 20 F 1.39896 * 109.47233 * 180.02562 * 19 14 13 21 21 F 1.39898 * 109.47445 * 300.00697 * 19 14 13 22 22 F 1.39904 * 109.46825 * 60.00248 * 19 14 13 23 23 H 0.97005 * 120.00042 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46908 * 60.00755 * 10 9 7 25 25 H 1.08998 * 109.47387 * 300.00211 * 10 9 7 26 26 H 0.97003 * 120.00327 * 359.97438 * 13 11 10 27 27 H 1.09004 * 115.56709 * 34.30620 * 16 14 13 28 28 H 1.09002 * 117.49696 * 0.02562 * 17 16 14 29 29 H 1.09002 * 117.50343 * 145.02258 * 17 16 14 30 30 H 1.08999 * 117.49685 * 252.51237 * 18 17 16 31 31 H 1.08999 * 117.52022 * 107.47599 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3305 -7.7151 0.0008 15 1 1.4145 -7.7600 0.5898 16 6 3.3757 -8.6509 0.6110 17 6 4.0555 -9.6550 -0.3220 18 6 3.0258 -10.1377 0.7015 19 6 2.0345 -8.1489 -1.4362 20 9 1.5434 -9.4589 -1.4361 21 9 1.0788 -7.2931 -1.9943 22 9 3.2102 -8.0912 -2.1923 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7313 0.8896 25 1 3.1246 -3.7313 -0.8905 26 1 3.8010 -6.1835 0.0004 27 1 3.9758 -8.2253 1.4154 28 1 3.7584 -9.6485 -1.3707 29 1 5.1028 -9.8900 -0.1315 30 1 3.3956 -10.6900 1.5653 31 1 2.0508 -10.4489 0.3266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346064003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = -157.126975 kcal Electronic energy + Delta-G solvation = -20432.709979 eV Core-core repulsion = 16619.740512 eV Total energy + Delta-G solvation = -3812.969467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.28865 -47.72363 -47.59475 -39.63123 -37.78275 -34.34642 -32.45403 -30.41892 -27.92717 -25.50981 -24.39963 -22.83239 -21.20344 -20.60664 -18.86894 -18.59923 -18.00475 -17.55131 -16.44814 -16.10005 -15.26952 -14.83517 -14.80963 -14.73177 -14.51328 -14.37847 -14.04223 -13.96941 -13.72197 -13.48260 -13.16272 -12.86984 -12.56347 -12.10293 -11.64084 -11.57079 -11.07839 -11.05388 -10.90208 -10.76810 -10.63388 -9.86790 -9.63232 -9.35321 -9.07911 -8.29239 -6.54046 -6.24012 -3.95475 2.42647 2.70888 2.99298 3.21496 3.22401 3.27561 3.35790 3.52921 3.71643 3.79770 4.13735 4.17628 4.41955 4.48328 4.58656 4.88153 5.02848 5.11306 5.23137 5.34627 5.49929 5.59202 5.71077 5.77632 5.79953 6.05157 6.17990 7.38746 7.56976 8.32271 8.34984 9.21199 10.83335 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.003805 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.897579 B = 7356.110146 C = 7547.713832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.056 6.056 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.498 6.498 13 N -0.728 5.728 14 C 0.143 3.857 15 H 0.133 0.867 16 C -0.173 4.173 17 C -0.193 4.193 18 C -0.169 4.169 19 C 0.433 3.567 20 F -0.182 7.182 21 F -0.165 7.165 22 F -0.178 7.178 23 H 0.269 0.731 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.409 0.591 27 H 0.131 0.869 28 H 0.112 0.888 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.415 -19.152 0.482 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.171 5.829 10 C -0.302 4.302 11 C 0.319 3.681 12 O -0.370 6.370 13 N -0.383 5.383 14 C 0.034 3.966 15 H 0.150 0.850 16 C -0.191 4.191 17 C -0.229 4.229 18 C -0.206 4.206 19 C 0.377 3.623 20 F -0.163 7.163 21 F -0.147 7.147 22 F -0.160 7.160 23 H 0.079 0.921 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.245 0.755 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.211 -19.336 0.452 20.641 hybrid contribution 2.424 1.268 -0.274 2.749 sum 9.635 -18.068 0.179 20.477 Atomic orbital electron populations 1.70004 1.05968 1.27648 1.46619 1.24987 0.95022 0.99031 0.94434 0.86218 0.79241 0.81188 0.78821 1.19903 1.20789 1.19919 1.22820 0.94902 0.91579 1.59301 0.90891 1.85435 1.04475 0.96285 1.96753 1.23522 1.06931 0.94478 1.05294 1.20566 0.86546 0.86370 0.74605 1.90744 1.15084 1.85252 1.45914 1.45963 1.10924 1.03171 1.78280 1.21449 1.01263 0.84148 0.89745 0.84968 1.22389 1.01603 0.91242 1.03884 1.23684 0.99151 1.02020 0.98052 1.23237 1.01507 0.94035 1.01864 1.21327 0.74601 0.74980 0.91377 1.93123 1.88293 1.38055 1.96873 1.93297 1.64366 1.69860 1.87135 1.93082 1.48019 1.95630 1.79230 0.92068 0.88819 0.88852 0.75507 0.85157 0.86975 0.87964 0.87948 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.21 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 11 C 0.53 9.47 7.38 -10.98 -0.08 9.39 16 12 O -0.50 -10.78 14.44 5.56 0.08 -10.70 16 13 N -0.73 -9.18 4.99 -53.81 -0.27 -9.45 16 14 C 0.14 1.64 2.51 -67.93 -0.17 1.47 16 15 H 0.13 1.64 7.58 -51.93 -0.39 1.25 16 16 C -0.17 -1.42 5.85 -90.62 -0.53 -1.95 16 17 C -0.19 -1.50 9.04 -26.73 -0.24 -1.74 16 18 C -0.17 -1.25 9.72 -26.73 -0.26 -1.51 16 19 C 0.43 5.58 2.49 37.16 0.09 5.67 16 20 F -0.18 -2.13 13.63 2.25 0.03 -2.10 16 21 F -0.17 -2.77 15.68 2.25 0.04 -2.73 16 22 F -0.18 -2.18 14.36 2.25 0.03 -2.15 16 23 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 24 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.41 3.92 8.60 -40.82 -0.35 3.57 16 27 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.02 4.51 -51.93 -0.23 0.79 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.11 0.87 6.36 -51.93 -0.33 0.54 16 LS Contribution 289.78 15.07 4.37 4.37 Total: -1.00 -33.07 289.78 -5.96 -39.04 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: -2.97 Total: 0.67 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -0.77 Total: -4.18 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.47 Total: -34.66 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 0.10 Total: -6.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.07 -5.96 -39.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346064003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.090 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds