Wall clock time and date at job start Tue Mar 31 2020 05:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86808 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47246 * 240.00191 * 3 2 1 5 5 H 1.48501 * 109.46759 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46870 * 119.99760 * 3 2 1 7 7 C 1.38797 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00272 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99797 * 359.97438 * 7 2 1 10 10 C 1.80999 * 100.00051 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47088 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00274 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99767 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00131 * 180.02562 * 13 11 10 15 15 H 1.09002 * 109.46859 * 325.00066 * 14 13 11 16 16 C 1.52989 * 109.47178 * 204.99878 * 14 13 11 17 17 C 1.53000 * 117.50008 * 248.61886 * 16 14 13 18 18 C 1.52997 * 60.00347 * 252.51154 * 17 16 14 19 19 C 1.53001 * 109.47319 * 84.99284 * 14 13 11 20 20 F 1.39896 * 109.47233 * 180.02562 * 19 14 13 21 21 F 1.39898 * 109.47445 * 300.00697 * 19 14 13 22 22 F 1.39904 * 109.46825 * 60.00248 * 19 14 13 23 23 H 0.97005 * 120.00042 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.46908 * 60.00755 * 10 9 7 25 25 H 1.08998 * 109.47387 * 300.00211 * 10 9 7 26 26 H 0.97003 * 120.00327 * 359.97438 * 13 11 10 27 27 H 1.09004 * 115.56709 * 34.30620 * 16 14 13 28 28 H 1.09002 * 117.49696 * 0.02562 * 17 16 14 29 29 H 1.09002 * 117.50343 * 145.02258 * 17 16 14 30 30 H 1.08999 * 117.49685 * 252.51237 * 18 17 16 31 31 H 1.08999 * 117.52022 * 107.47599 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3305 -7.7151 0.0008 15 1 1.4145 -7.7600 0.5898 16 6 3.3757 -8.6509 0.6110 17 6 4.0555 -9.6550 -0.3220 18 6 3.0258 -10.1377 0.7015 19 6 2.0345 -8.1489 -1.4362 20 9 1.5434 -9.4589 -1.4361 21 9 1.0788 -7.2931 -1.9943 22 9 3.2102 -8.0912 -2.1923 23 1 -0.4850 0.8401 -0.0004 24 1 3.1244 -3.7313 0.8896 25 1 3.1246 -3.7313 -0.8905 26 1 3.8010 -6.1835 0.0004 27 1 3.9758 -8.2253 1.4154 28 1 3.7584 -9.6485 -1.3707 29 1 5.1028 -9.8900 -0.1315 30 1 3.3956 -10.6900 1.5653 31 1 2.0508 -10.4489 0.3266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346064003.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:16 Heat of formation + Delta-G solvation = -179.510901 kcal Electronic energy + Delta-G solvation = -20433.680619 eV Core-core repulsion = 16619.740512 eV Total energy + Delta-G solvation = -3813.940107 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.33936 -48.75188 -48.72646 -40.92107 -38.64714 -35.49784 -34.57714 -31.76368 -29.18754 -27.63549 -25.36383 -23.43790 -22.10265 -21.85907 -20.03935 -19.73876 -19.59154 -18.77066 -17.89742 -17.13010 -16.86972 -16.31925 -16.22915 -15.74180 -15.63349 -15.50123 -15.36051 -15.07069 -14.84815 -14.82751 -14.49699 -14.22237 -13.91485 -13.44804 -13.16806 -12.85962 -12.63899 -12.48686 -12.18284 -11.76681 -11.56479 -11.29339 -11.12240 -11.05219 -10.53064 -10.28522 -8.66669 -8.34011 -6.12300 1.17141 1.29820 1.43867 1.45033 1.54532 1.75888 1.95482 2.27695 2.59171 2.84487 2.87469 3.00509 3.10796 3.30105 3.52316 3.73786 3.92627 3.96817 4.26783 4.30203 4.32373 4.49645 4.79861 4.93746 5.02920 5.14538 5.21967 5.42619 6.20181 6.26094 7.02968 7.07526 8.74892 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.039939 B = 0.003805 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.897579 B = 7356.110146 C = 7547.713832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.085 0.915 9 S -0.148 6.148 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.543 6.543 13 N -0.704 5.704 14 C 0.144 3.856 15 H 0.122 0.878 16 C -0.172 4.172 17 C -0.191 4.191 18 C -0.164 4.164 19 C 0.431 3.569 20 F -0.175 7.175 21 F -0.192 7.192 22 F -0.173 7.173 23 H 0.271 0.729 24 H 0.119 0.881 25 H 0.111 0.889 26 H 0.427 0.573 27 H 0.153 0.847 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.229 -19.757 1.079 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.185 1.185 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.079 5.921 10 C -0.280 4.280 11 C 0.323 3.677 12 O -0.418 6.418 13 N -0.359 5.359 14 C 0.036 3.964 15 H 0.140 0.860 16 C -0.190 4.190 17 C -0.227 4.227 18 C -0.201 4.201 19 C 0.375 3.625 20 F -0.156 7.156 21 F -0.174 7.174 22 F -0.155 7.155 23 H 0.080 0.920 24 H 0.137 0.863 25 H 0.129 0.871 26 H 0.267 0.733 27 H 0.170 0.830 28 H 0.115 0.885 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.081 -19.982 1.047 22.406 hybrid contribution 1.589 1.280 -0.489 2.099 sum 11.671 -18.702 0.558 22.052 Atomic orbital electron populations 1.70176 1.07999 1.28684 1.47945 1.26111 0.95919 1.03291 0.93693 0.85017 0.77808 0.75732 0.79524 1.18731 1.20533 1.18517 1.23183 0.95431 0.91937 1.58994 0.89714 1.85614 1.10219 0.99207 1.97082 1.23354 1.03836 0.93448 1.07324 1.20271 0.86254 0.86767 0.74393 1.90739 1.17047 1.85769 1.48290 1.45612 1.11244 1.02761 1.76318 1.21587 1.02217 0.83760 0.88831 0.86021 1.22397 1.01094 0.91022 1.04511 1.23709 1.00357 1.01487 0.97166 1.23329 1.01103 0.93246 1.02464 1.21545 0.74193 0.74936 0.91860 1.93137 1.88251 1.37388 1.96870 1.93250 1.65590 1.70864 1.87672 1.93096 1.47470 1.95652 1.79254 0.92001 0.86293 0.87058 0.73330 0.82968 0.88518 0.85926 0.85773 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.66 13.22 21.65 0.29 -55.37 16 2 C 0.01 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.03 29.55 68.60 2.03 45.06 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 7 C -0.55 -30.75 9.50 67.95 0.65 -30.10 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 10 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 11 C 0.54 18.72 7.38 87.66 0.65 19.37 16 12 O -0.54 -23.97 14.44 -3.01 -0.04 -24.01 16 13 N -0.70 -16.41 4.99 -442.54 -2.21 -18.62 16 14 C 0.14 3.10 2.51 44.99 0.11 3.22 16 15 H 0.12 2.96 7.58 -2.39 -0.02 2.94 16 16 C -0.17 -2.32 5.85 -10.80 -0.06 -2.39 16 17 C -0.19 -2.40 9.04 30.59 0.28 -2.12 16 18 C -0.16 -1.97 9.72 30.60 0.30 -1.67 16 19 C 0.43 10.77 2.49 71.98 0.18 10.94 16 20 F -0.17 -3.98 13.63 44.97 0.61 -3.36 16 21 F -0.19 -6.53 15.68 44.97 0.70 -5.82 16 22 F -0.17 -4.01 14.36 44.97 0.65 -3.36 16 23 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 24 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 25 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 26 H 0.43 6.85 8.60 -92.71 -0.80 6.06 16 27 H 0.15 1.46 8.14 -2.38 -0.02 1.44 16 28 H 0.10 1.56 4.51 -2.39 -0.01 1.55 16 29 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.10 1.40 6.36 -2.39 -0.02 1.38 16 Total: -1.00 -73.90 289.78 4.25 -69.65 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.39 Total: 10.95 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 3.00 Total: -5.86 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.92 Total: -74.00 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.04 Total: -24.01 kcal Atomic # 9 Polarization: -14.51 SS G_CDS: 1.96 Total: -12.55 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -73.90 4.25 -69.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346064003.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.864 kcal (2) G-P(sol) polarization free energy of solvation -73.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds