Wall clock time and date at job start Tue Mar 31 2020 05:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86810 * 120.00017 * 2 1 4 4 H 1.48497 * 109.47063 * 270.00173 * 3 2 1 5 5 H 1.48496 * 109.46981 * 30.00270 * 3 2 1 6 6 H 1.48500 * 109.47085 * 150.00482 * 3 2 1 7 7 C 1.38799 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00146 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99985 * 179.97438 * 7 2 1 10 10 C 1.81006 * 99.99942 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.46977 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00290 * 359.97438 * 11 10 9 13 13 N 1.34782 * 119.99595 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99783 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47092 * 34.99932 * 14 13 11 16 16 C 1.52997 * 109.47204 * 154.99869 * 14 13 11 17 17 C 1.52999 * 117.50055 * 248.62340 * 16 14 13 18 18 C 1.52993 * 117.50185 * 179.97438 * 16 14 13 19 19 C 1.52997 * 109.47007 * 274.99983 * 14 13 11 20 20 F 1.39905 * 109.47157 * 299.99894 * 19 14 13 21 21 F 1.39900 * 109.47010 * 180.02562 * 19 14 13 22 22 F 1.39897 * 109.47422 * 59.99976 * 19 14 13 23 23 H 0.97000 * 120.00462 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47344 * 59.99765 * 10 9 7 25 25 H 1.09008 * 109.46945 * 299.99896 * 10 9 7 26 26 H 0.96997 * 119.99943 * 359.97438 * 13 11 10 27 27 H 1.09000 * 115.54829 * 34.32859 * 16 14 13 28 28 H 1.09000 * 117.49884 * 359.97438 * 17 16 14 29 29 H 1.08999 * 117.50198 * 145.01827 * 17 16 14 30 30 H 1.08996 * 117.50369 * 214.98051 * 18 16 14 31 31 H 1.09003 * 117.49811 * 0.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4402 0.6999 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2019 -0.0012 10 6 4.0866 -2.9845 -0.0009 11 6 5.5731 -3.2324 -0.0008 12 8 6.3441 -2.2962 -0.0014 13 7 6.0458 -4.4946 -0.0011 14 6 7.4908 -4.7356 -0.0016 15 1 7.9879 -3.9651 0.5878 16 6 7.7790 -6.1091 0.6078 17 6 8.4848 -6.1460 1.9647 18 6 9.2414 -6.5497 0.6971 19 6 8.0141 -4.6953 -1.4387 20 9 7.3761 -5.6843 -2.1952 21 9 9.3939 -4.9261 -1.4392 22 9 7.7506 -3.4395 -1.9960 23 1 -0.4851 0.8400 0.0004 24 1 3.6434 -3.4318 -0.8906 25 1 3.6440 -3.4313 0.8894 26 1 5.4291 -5.2434 -0.0011 27 1 7.0332 -6.8783 0.4070 28 1 8.7443 -5.1917 2.4231 29 1 8.2034 -6.9394 2.6570 30 1 9.4576 -7.6086 0.5557 31 1 9.9983 -5.8608 0.3220 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346064005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:19 Heat of formation + Delta-G solvation = -189.240602 kcal Electronic energy + Delta-G solvation = -20341.314692 eV Core-core repulsion = 16526.952674 eV Total energy + Delta-G solvation = -3814.362018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.059 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.14426 -48.67077 -48.61271 -40.97736 -38.66335 -35.54546 -34.67240 -31.86027 -29.28926 -27.84058 -25.15629 -23.32448 -22.31638 -21.87175 -19.93234 -19.62198 -19.39174 -18.77967 -17.96244 -17.67928 -17.09695 -16.41206 -16.06656 -15.54671 -15.47300 -15.35140 -15.14119 -15.02536 -14.89715 -14.79674 -14.76280 -14.46285 -14.01553 -13.45396 -13.34843 -13.02124 -12.74687 -12.59249 -12.30533 -11.88200 -11.56073 -11.34067 -11.17310 -11.09193 -10.55670 -10.54509 -9.00339 -8.51598 -6.22563 0.92755 1.24614 1.31853 1.42247 1.51047 1.76956 1.91470 2.24683 2.54545 2.67312 2.86609 2.87121 3.00452 3.19173 3.59333 3.70003 3.83492 3.98455 4.07272 4.20919 4.36065 4.45065 4.81637 4.93472 5.01982 5.15297 5.24323 5.70775 6.11893 6.20784 6.93657 6.96838 8.60785 Molecular weight = 283.06amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.004132 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.595622 B = 6774.552193 C = 7004.225650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.048 3.952 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.064 0.936 9 S -0.173 6.173 10 C -0.110 4.110 11 C 0.538 3.462 12 O -0.541 6.541 13 N -0.703 5.703 14 C 0.147 3.853 15 H 0.121 0.879 16 C -0.185 4.185 17 C -0.153 4.153 18 C -0.167 4.167 19 C 0.433 3.567 20 F -0.180 7.180 21 F -0.175 7.175 22 F -0.193 7.193 23 H 0.277 0.723 24 H 0.115 0.885 25 H 0.123 0.877 26 H 0.427 0.573 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.270 -16.675 2.021 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.158 4.158 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.159 1.159 7 C -0.677 4.677 8 H 0.082 0.918 9 S 0.054 5.946 10 C -0.261 4.261 11 C 0.325 3.675 12 O -0.416 6.416 13 N -0.359 5.359 14 C 0.038 3.962 15 H 0.138 0.862 16 C -0.203 4.203 17 C -0.189 4.189 18 C -0.204 4.204 19 C 0.377 3.623 20 F -0.162 7.162 21 F -0.157 7.157 22 F -0.175 7.175 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.141 0.859 26 H 0.267 0.733 27 H 0.160 0.840 28 H 0.114 0.886 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 19.359 -15.022 1.994 24.585 hybrid contribution -1.420 -0.459 -0.577 1.600 sum 17.939 -15.482 1.417 23.738 Atomic orbital electron populations 1.70007 1.07308 1.29030 1.49124 1.25528 0.95218 1.02169 0.92876 0.85900 0.80766 0.79761 0.80155 1.18890 1.18324 1.15936 1.22460 0.90184 0.96757 1.58281 0.91751 1.84749 1.06529 1.05758 1.97607 1.23246 0.94863 1.00015 1.07990 1.20145 0.89979 0.82884 0.74535 1.90736 1.59081 1.43398 1.48412 1.45595 1.06063 1.08102 1.76107 1.21586 0.83710 1.01725 0.89152 0.86169 1.22368 0.99609 0.94244 1.04111 1.23179 1.01422 1.04332 0.90012 1.23324 0.91908 1.03937 1.01246 1.21545 0.75963 0.73157 0.91614 1.93164 1.81735 1.62159 1.79138 1.93136 1.31443 1.94252 1.96858 1.93241 1.93703 1.42808 1.87732 0.91357 0.86673 0.85928 0.73324 0.84003 0.88560 0.86062 0.86082 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 2 C 0.05 2.77 5.50 84.86 0.47 3.23 16 3 Si 0.91 44.60 27.74 68.60 1.90 46.51 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.24 -11.44 6.74 99.48 0.67 -10.77 16 7 C -0.53 -30.32 10.04 67.95 0.68 -29.63 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.17 -8.54 18.55 -56.49 -1.05 -9.59 16 10 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 11 C 0.54 17.38 7.38 87.66 0.65 18.02 16 12 O -0.54 -21.83 14.43 -3.03 -0.04 -21.87 16 13 N -0.70 -15.27 4.99 -442.53 -2.21 -17.48 16 14 C 0.15 2.92 2.35 44.99 0.11 3.02 16 15 H 0.12 2.68 7.33 -2.39 -0.02 2.66 16 16 C -0.18 -2.29 5.09 -10.80 -0.05 -2.35 16 17 C -0.15 -1.56 10.18 30.61 0.31 -1.25 16 18 C -0.17 -1.79 9.34 30.61 0.29 -1.50 16 19 C 0.43 10.26 2.82 71.98 0.20 10.47 16 20 F -0.18 -4.10 16.95 44.97 0.76 -3.34 16 21 F -0.18 -3.78 14.50 44.97 0.65 -3.13 16 22 F -0.19 -6.17 15.68 44.97 0.70 -5.47 16 23 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 24 H 0.12 3.80 8.14 -2.40 -0.02 3.78 16 25 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 26 H 0.43 6.33 8.55 -92.71 -0.79 5.54 16 27 H 0.14 1.27 8.07 -2.39 -0.02 1.25 16 28 H 0.10 1.11 8.05 -2.39 -0.02 1.10 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 1.28 6.36 -2.39 -0.02 1.27 16 Total: -1.00 -71.61 293.88 4.46 -67.15 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.35 Total: 5.80 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 3.09 Total: -3.49 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.91 Total: -72.57 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.87 kcal Atomic # 9 Polarization: -14.05 SS G_CDS: 2.12 Total: -11.93 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.05 Total: -9.59 kcal Total: -71.61 4.46 -67.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346064005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.088 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds