Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39649 * 120.13800 * 107.16273 * 3 2 1 5 5 C 1.37933 * 119.89785 * 180.02562 * 4 3 2 6 6 C 1.38346 * 120.17885 * 0.02562 * 5 4 3 7 7 S 1.76205 * 119.85771 * 179.97438 * 6 5 4 8 8 O 1.42103 * 104.27563 * 231.09291 * 7 6 5 9 9 O 1.42099 * 104.27650 * 358.94862 * 7 6 5 10 10 C 1.81401 * 104.44895 * 115.02300 * 7 6 5 11 11 C 1.52992 * 109.46802 * 179.97438 * 10 7 6 12 12 C 1.50705 * 109.46968 * 179.97438 * 11 10 7 13 13 H 1.08001 * 120.00050 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00040 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99754 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.46991 * 60.00287 * 16 14 12 18 18 H 1.48503 * 109.47036 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47270 * 299.99979 * 16 14 12 20 20 C 1.38548 * 120.28196 * 0.02562 * 6 5 4 21 21 F 1.35104 * 119.95279 * 179.97438 * 20 6 5 22 22 C 1.38201 * 120.09837 * 0.22698 * 20 6 5 23 23 H 1.08003 * 120.05246 * 359.97438 * 4 3 2 24 24 H 1.08004 * 119.90995 * 179.97438 * 5 4 3 25 25 H 1.08994 * 109.47067 * 299.99817 * 10 7 6 26 26 H 1.09008 * 109.46727 * 59.99929 * 10 7 6 27 27 H 1.09000 * 109.47620 * 299.99561 * 11 10 7 28 28 H 1.09002 * 109.47653 * 60.00544 * 11 10 7 29 29 H 0.96997 * 119.99754 * 180.02562 * 15 14 12 30 30 H 1.08002 * 120.09171 * 179.74579 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 0.3573 -1.1539 5 6 4.6483 0.3557 -1.1486 6 6 5.3389 0.0013 -0.0034 7 16 7.1010 0.0015 -0.0062 8 8 7.4524 -1.2779 0.5029 9 8 7.4493 0.3843 -1.3296 10 6 7.5553 1.3026 1.1733 11 6 9.0795 1.4015 1.2613 12 6 9.4570 2.4829 2.2408 13 1 8.6868 3.0433 2.7499 14 6 10.7857 2.7569 2.4869 15 7 11.7236 2.0743 1.8674 16 14 11.2535 4.0969 3.7015 17 1 10.7014 3.7665 5.0399 18 1 12.7329 4.1930 3.7869 19 1 10.6982 5.3958 3.2438 20 6 4.6510 -0.3549 1.1452 21 9 5.3321 -0.7004 2.2597 22 6 3.2690 -0.3624 1.1512 23 1 2.7320 0.6332 -2.0494 24 1 5.1907 0.6312 -2.0410 25 1 7.1478 2.2560 0.8373 26 1 7.1499 1.0601 2.1557 27 1 9.4868 0.4480 1.5976 28 1 9.4853 1.6438 0.2791 29 1 12.6583 2.2668 2.0409 30 1 2.7329 -0.6440 2.0454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352395442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -61.300684 kcal Electronic energy + Delta-G solvation = -19082.507880 eV Core-core repulsion = 15692.090188 eV Total energy + Delta-G solvation = -3390.417692 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 283.046 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.44081 -39.72367 -36.91749 -36.71042 -35.61272 -33.97457 -32.17514 -31.30514 -31.13918 -25.81772 -25.06041 -23.41995 -21.66366 -19.81287 -19.03222 -17.74376 -17.26756 -16.54995 -16.53387 -16.15734 -15.40967 -15.21006 -14.74304 -14.55915 -14.42494 -14.39845 -13.99220 -13.55050 -13.23309 -12.89761 -12.65057 -12.52172 -12.09254 -11.84679 -11.72629 -11.64408 -11.10159 -11.04711 -10.92159 -10.48045 -10.44129 -9.95915 -9.73211 -9.38013 -9.22492 -8.53627 -6.16254 -4.22355 -0.24154 0.37371 0.61589 2.09199 2.18895 3.05137 3.13686 3.17460 3.25877 3.31081 3.32560 3.72039 3.97293 4.17171 4.33143 4.35063 4.58537 4.78186 4.96517 5.12550 5.19274 5.40734 5.45129 5.56367 5.58627 5.62132 6.13939 6.35658 6.88966 7.23207 7.28771 7.76258 8.10922 8.80580 9.42692 10.94619 Molecular weight = 283.05amu Principal moments of inertia in cm(-1) A = 0.027085 B = 0.004208 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.534662 B = 6651.965921 C = 7032.523211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.251 3.749 3 C 0.045 3.955 4 C -0.103 4.103 5 C 0.005 3.995 6 C -0.670 4.670 7 S 2.467 3.533 8 O -0.930 6.930 9 O -0.937 6.937 10 C -0.560 4.560 11 C 0.027 3.973 12 C -0.522 4.522 13 H 0.063 0.937 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.194 3.806 21 F -0.110 7.110 22 C -0.128 4.128 23 H 0.150 0.850 24 H 0.168 0.832 25 H 0.128 0.872 26 H 0.127 0.873 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.266 0.734 30 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.642 -2.927 -4.097 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.065 4.065 3 C 0.042 3.958 4 C -0.124 4.124 5 C -0.014 4.014 6 C -0.753 4.753 7 S 2.647 3.353 8 O -0.928 6.928 9 O -0.934 6.934 10 C -0.694 4.694 11 C -0.012 4.012 12 C -0.562 4.562 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.527 5.527 16 Si 0.728 3.272 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.200 1.200 20 C 0.173 3.827 21 F -0.088 7.088 22 C -0.150 4.150 23 H 0.167 0.833 24 H 0.185 0.815 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.767 -3.558 -4.599 17.747 hybrid contribution 0.108 1.030 1.316 1.675 sum -16.659 -2.528 -3.283 17.166 Atomic orbital electron populations 1.81298 1.11720 1.07175 1.06785 1.25455 0.92340 0.94442 0.94235 1.15879 0.84567 1.00454 0.94901 1.21387 0.94262 0.99429 0.97360 1.20950 0.93609 0.90238 0.96590 1.31502 1.30145 1.14411 0.99218 1.06861 0.72773 0.78248 0.77467 1.93580 1.80293 1.37518 1.81366 1.93525 1.80447 1.84634 1.34800 1.30198 1.11394 1.14175 1.13661 1.19045 0.82558 0.99832 0.99721 1.20935 0.92076 1.18503 1.24660 0.91911 1.25053 0.96444 0.96597 0.96253 1.69937 1.00509 1.40330 1.41933 0.86514 0.77459 0.81860 0.81356 1.20028 1.21066 1.20039 1.16796 0.89613 0.94317 0.81959 1.91681 1.79383 1.88513 1.49212 1.21157 0.92305 1.02273 0.99264 0.83254 0.81481 0.85413 0.85464 0.94432 0.94440 0.92383 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.42 18.54 41.84 0.78 -3.64 16 2 C 0.25 2.28 15.33 -22.47 -0.34 1.93 16 3 C 0.05 0.37 5.73 -106.94 -0.61 -0.24 16 4 C -0.10 -0.77 9.75 -39.17 -0.38 -1.15 16 5 C 0.00 0.04 9.48 -39.65 -0.38 -0.33 16 6 C -0.67 -8.24 5.59 -39.43 -0.22 -8.46 16 7 S 2.47 40.39 4.80 -107.50 -0.52 39.87 16 8 O -0.93 -18.13 17.34 -57.54 -1.00 -19.12 16 9 O -0.94 -16.77 16.72 -57.54 -0.96 -17.74 16 10 C -0.56 -9.83 5.91 37.15 0.22 -9.61 16 11 C 0.03 0.66 4.98 -27.88 -0.14 0.52 16 12 C -0.52 -13.78 9.11 -34.44 -0.31 -14.09 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 16 Si 0.90 20.54 29.54 -169.99 -5.02 15.51 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 20 C 0.19 2.24 7.17 -39.48 -0.28 1.96 16 21 F -0.11 -1.45 15.70 2.25 0.04 -1.42 16 22 C -0.13 -1.13 9.74 -39.09 -0.38 -1.51 16 23 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 24 H 0.17 1.40 7.19 -52.48 -0.38 1.02 16 25 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 26 H 0.13 2.03 7.57 -51.92 -0.39 1.63 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 296.85 15.07 4.47 4.47 Total: -1.00 -32.99 296.85 -6.83 -39.82 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: -2.43 Total: -3.47 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -2.93 Total: -29.47 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 1.51 Total: -28.47 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.96 Total: -36.86 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 40.39 SS G_CDS: -0.52 Total: 39.87 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.99 -6.83 -39.82 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352395442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.479 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds